<h3>Specific improvements</h3>
<ol>
+ <li>New: The DataOut, DataOutFaces, and DataOutRotation classes now allow
+ the output of data vectors using different DoFHandler objects (based on the
+ same triangulation), by new functions add_data_vector. This is used in the
+ step-31 tutorial program which avoids creating a joint DoFHandler just for
+ output.
+ <br>
+ (Martin Kronbichler, 2013/07/24)
+ </li>
+
<li>Changed: GridGenerator used to be a class with only static members
but is now a namespace, like all other similar constructs in deal.II.
<br>
// This function writes the solution to a VTK output file for visualization,
// which is done every tenth time step. This is usually quite a simple task,
// since the deal.II library provides functions that do almost all the job
- // for us. In this case, the situation is a bit more complicated, since we
- // want to visualize both the Stokes solution and the temperature as one
- // data set, but we have done all the calculations based on two different
- // DoFHandler objects, a situation the DataOut class usually used for output
- // is not prepared to deal with. The way we're going to achieve this
- // recombination is to create a joint DoFHandler that collects both
- // components, the Stokes solution and the temperature solution. This can be
- // nicely done by combining the finite elements from the two systems to form
- // one FESystem, and let this collective system define a new DoFHandler
- // object. To be sure that everything was done correctly, we perform a
- // sanity check that ensures that we got all the dofs from both Stokes and
- // temperature even in the combined system.
- //
- // Next, we create a vector that will collect the actual solution
- // values. Since this vector is only going to be used for output, we create
- // it as a deal.II vector that nicely cooperate with the data output
- // classes. Remember that we used Trilinos vectors for assembly and solving.
+ // for us. There is one new function compared to previous examples: We want
+ // to visualize both the Stokes solution and the temperature as one data
+ // set, but we have done all the calculations based on two different
+ // DoFHandler objects. Luckily, the DataOut class is prepared to deal with
+ // it. All we have to do is to not attach one single DoFHandler at the
+ // beginning and then use that for all added vector, but specify the
+ // DoFHandler to each vector separately. The rest is done as in step-22. We
+ // create solution names (that are going to appear in the visualization
+ // program for the individual components). The first <code>dim</code>
+ // components are the vector velocity, and then we have pressure for the
+ // Stokes part, whereas temperature is scalar. This information is read out
+ // using the DataComponentInterpretation helper class. Next, we actually
+ // attach the data vectors with their DoFHandler objects, build patches
+ // according to the degree of freedom, which are (sub-) elements that
+ // describe the data for visualization programs. Finally, we set a file name
+ // (that includes the time step number) and write the vtk file.
template <int dim>
void BoussinesqFlowProblem<dim>::output_results () const
{
if (timestep_number % 10 != 0)
return;
- const FESystem<dim> joint_fe (stokes_fe, 1,
- temperature_fe, 1);
- DoFHandler<dim> joint_dof_handler (triangulation);
- joint_dof_handler.distribute_dofs (joint_fe);
- Assert (joint_dof_handler.n_dofs() ==
- stokes_dof_handler.n_dofs() + temperature_dof_handler.n_dofs(),
- ExcInternalError());
-
- Vector<double> joint_solution (joint_dof_handler.n_dofs());
-
- // Unfortunately, there is no straight-forward relation that tells us how
- // to sort Stokes and temperature vector into the joint vector. The way we
- // can get around this trouble is to rely on the information collected in
- // the FESystem. For each dof in a cell, the joint finite element knows to
- // which equation component (velocity component, pressure, or temperature)
- // it belongs – that's the information we need! So we step through
- // all cells (with iterators into all three DoFHandlers moving in synch),
- // and for each joint cell dof, we read out that component using the
- // FiniteElement::system_to_base_index function (see there for a
- // description of what the various parts of its return value contain). We
- // also need to keep track whether we're on a Stokes dof or a temperature
- // dof, which is contained in
- // <code>joint_fe.system_to_base_index(i).first.first</code>. Eventually,
- // the dof_indices data structures on either of the three systems tell us
- // how the relation between global vector and local dofs looks like on the
- // present cell, which concludes this tedious work.
- //
- // There's one thing worth remembering when looking at the output: In our
- // algorithm, we first solve for the Stokes system at time level
- // <i>n-1</i> in each time step and then for the temperature at time level
- // <i>n</i> using the previously computed velocity. These are the two
- // components we join for output, so these two parts of the output file
- // are actually misaligned by one time step. Since we consider graphical
- // output as only a qualititative means to understand a solution, we
- // ignore this $\mathcal{O}(h)$ error.
- {
- std::vector<types::global_dof_index> local_joint_dof_indices (joint_fe.dofs_per_cell);
- std::vector<types::global_dof_index> local_stokes_dof_indices (stokes_fe.dofs_per_cell);
- std::vector<types::global_dof_index> local_temperature_dof_indices (temperature_fe.dofs_per_cell);
-
- typename DoFHandler<dim>::active_cell_iterator
- joint_cell = joint_dof_handler.begin_active(),
- joint_endc = joint_dof_handler.end(),
- stokes_cell = stokes_dof_handler.begin_active(),
- temperature_cell = temperature_dof_handler.begin_active();
- for (; joint_cell!=joint_endc; ++joint_cell, ++stokes_cell, ++temperature_cell)
- {
- joint_cell->get_dof_indices (local_joint_dof_indices);
- stokes_cell->get_dof_indices (local_stokes_dof_indices);
- temperature_cell->get_dof_indices (local_temperature_dof_indices);
-
- for (unsigned int i=0; i<joint_fe.dofs_per_cell; ++i)
- if (joint_fe.system_to_base_index(i).first.first == 0)
- {
- Assert (joint_fe.system_to_base_index(i).second
- <
- local_stokes_dof_indices.size(),
- ExcInternalError());
- joint_solution(local_joint_dof_indices[i])
- = stokes_solution(local_stokes_dof_indices[joint_fe.system_to_base_index(i).second]);
- }
- else
- {
- Assert (joint_fe.system_to_base_index(i).first.first == 1,
- ExcInternalError());
- Assert (joint_fe.system_to_base_index(i).second
- <
- local_temperature_dof_indices.size(),
- ExcInternalError());
- joint_solution(local_joint_dof_indices[i])
- = temperature_solution(local_temperature_dof_indices[joint_fe.system_to_base_index(i).second]);
- }
- }
- }
-
- // Next, we proceed as we've done in step-22. We create solution names
- // (that are going to appear in the visualization program for the
- // individual components), and attach the joint dof handler to a DataOut
- // object. The first <code>dim</code> components are the vector velocity,
- // and then we have pressure and temperature. This information is read out
- // using the DataComponentInterpretation helper class. Next, we attach the
- // solution values together with the names of its components to the output
- // object, and build patches according to the degree of freedom, which are
- // (sub-) elements that describe the data for visualization
- // programs. Finally, we set a file name (that includes the time step
- // number) and write the vtk file.
- std::vector<std::string> joint_solution_names (dim, "velocity");
- joint_solution_names.push_back ("p");
- joint_solution_names.push_back ("T");
-
- DataOut<dim> data_out;
-
- data_out.attach_dof_handler (joint_dof_handler);
-
+ std::vector<std::string> stokes_names (dim, "velocity");
+ stokes_names.push_back ("p");
std::vector<DataComponentInterpretation::DataComponentInterpretation>
- data_component_interpretation
- (dim+2, DataComponentInterpretation::component_is_scalar);
+ stokes_component_interpretation
+ (dim+1, DataComponentInterpretation::component_is_scalar);
for (unsigned int i=0; i<dim; ++i)
- data_component_interpretation[i]
+ stokes_component_interpretation[i]
= DataComponentInterpretation::component_is_part_of_vector;
- data_out.add_data_vector (joint_solution, joint_solution_names,
- DataOut<dim>::type_dof_data,
- data_component_interpretation);
+ DataOut<dim> data_out;
+ data_out.add_data_vector (stokes_dof_handler, stokes_solution,
+ stokes_names, stokes_component_interpretation);
+ data_out.add_data_vector (temperature_dof_handler, temperature_solution,
+ "T");
data_out.build_patches (std::min(stokes_degree, temperature_degree));
std::ostringstream filename;
}
- // The <code>output_results()</code> function does mostly what the
- // corresponding one did in to step-31, in particular the merging data from
- // the two DoFHandler objects (for the Stokes and the temperature parts of
- // the problem) into one. There is one minor change: we make sure that each
- // processor only works on the subdomain it owns locally (and not on ghost
- // or artificial cells) when building the joint solution vector. The same
- // will then have to be done in DataOut::build_patches(), but that function
- // does so automatically.
+ // The <code>output_results()</code> function has a similar task to the one
+ // in step-31. However, here we are going to demonstrate a different
+ // technique on how to merge output from different DoFHandler objects. The
+ // way we're going to achieve this recombination is to create a joint
+ // DoFHandler that collects both components, the Stokes solution and the
+ // temperature solution. This can be nicely done by combining the finite
+ // elements from the two systems to form one FESystem, and let this
+ // collective system define a new DoFHandler object. To be sure that
+ // everything was done correctly, we perform a sanity check that ensures
+ // that we got all the dofs from both Stokes and temperature even in the
+ // combined system. We then combine the data vectors. Unfortunately, there
+ // is no straight-forward relation that tells us how to sort Stokes and
+ // temperature vector into the joint vector. The way we can get around this
+ // trouble is to rely on the information collected in the FESystem. For each
+ // dof on a cell, the joint finite element knows to which equation component
+ // (velocity component, pressure, or temperature) it belongs – that's the
+ // information we need! So we step through all cells (with iterators into
+ // all three DoFHandlers moving in synch), and for each joint cell dof, we
+ // read out that component using the FiniteElement::system_to_base_index
+ // function (see there for a description of what the various parts of its
+ // return value contain). We also need to keep track whether we're on a
+ // Stokes dof or a temperature dof, which is contained in
+ // joint_fe.system_to_base_index(i).first.first. Eventually, the dof_indices
+ // data structures on either of the three systems tell us how the relation
+ // between global vector and local dofs looks like on the present cell,
+ // which concludes this tedious work. We make sure that each processor only
+ // works on the subdomain it owns locally (and not on ghost or artificial
+ // cells) when building the joint solution vector. The same will then have
+ // to be done in DataOut::build_patches(), but that function does so
+ // automatically.
//
// What we end up with is a set of patches that we can write using the
// functions in DataOutBase in a variety of output formats. Here, we then
// pieces of data into a single DoFHandler object, and then use that to
// drive graphical output.
//
- // We will not elaborate on this process here, but rather refer to step-31
- // and step-32, where a similar procedure is used (and is documented) to
+ // We will not elaborate on this process here, but rather refer to step-32,
+ // where a similar procedure is used (and is documented) to
// create a joint DoFHandler object for all variables.
//
// Let us also note that we here compute the vorticity as a scalar quantity
{
public:
/**
- * Constructor. Set the fields
- * of this class to the values
- * indicated by the parameters
- * to the constructor.
+ * Constructor. Set the fields of this class to the values indicated by
+ * the parameters to the constructor.
*/
FEValuesBase (const dealii::hp::MappingCollection<dim,FEValues::space_dimension> &mapping_collection,
const dealii::hp::FECollection<dim,FEValues::space_dimension> &fe_collection,
const dealii::hp::QCollection<q_dim> &q_collection,
const UpdateFlags update_flags);
/**
- * Constructor. Set the fields
- * of this class to the values
- * indicated by the parameters
- * to the constructor, and
- * choose a @p MappingQ1
- * object for the mapping
- * object.
+ * Constructor. Set the fields of this class to the values indicated by
+ * the parameters to the constructor, and choose a @p MappingQ1 object
+ * for the mapping object.
*/
FEValuesBase (const dealii::hp::FECollection<dim,FEValues::space_dimension> &fe_collection,
const dealii::hp::QCollection<q_dim> &q_collection,
const UpdateFlags update_flags);
/**
- * Get a reference to the
- * collection of finite
- * element objects used here.
+ * Get a reference to the collection of finite element objects used
+ * here.
*/
const dealii::hp::FECollection<dim,FEValues::space_dimension> &
get_fe_collection () const;
/**
- * Return a reference to the @p
- * FEValues object selected by the
- * last call to
- * select_fe_values(). select_fe_values()
- * in turn is called when you called
- * the @p reinit function of the
- * <tt>hp::FE*Values</tt> class the
- * last time.
+ * Return a reference to the @p FEValues object selected by the last
+ * call to select_fe_values(). select_fe_values() in turn is called when
+ * you called the @p reinit function of the <tt>hp::FE*Values</tt> class
+ * the last time.
*/
const FEValues &get_present_fe_values () const;
protected:
/**
- * Select a FEValues object
- * suitable for the given FE,
- * quadrature, and mapping
- * indices. If such an object
- * doesn't yet exist, create
- * one.
+ * Select a FEValues object suitable for the given FE, quadrature, and
+ * mapping indices. If such an object doesn't yet exist, create one.
*
- * The function returns a
- * writable reference so that
- * derived classes can also
- * reinit() the selected
- * FEValues object.
+ * The function returns a writable reference so that derived classes can
+ * also reinit() the selected FEValues object.
*/
FEValues &
select_fe_values (const unsigned int fe_index,
protected:
/**
- * A pointer to the
- * collection of finite
- * elements to be used.
+ * A pointer to the collection of finite elements to be used.
*/
const SmartPointer<const dealii::hp::FECollection<dim,FEValues::space_dimension>,
FEValuesBase<dim,q_dim,FEValues> > fe_collection;
/**
- * A pointer to the
- * collection of mappings to
- * be used.
+ * A pointer to the collection of mappings to be used.
*/
const SmartPointer<const dealii::hp::MappingCollection<dim, FEValues::space_dimension>,
FEValuesBase<dim,q_dim,FEValues> > mapping_collection;
/**
- * Copy of the quadrature
- * collection object
- * provided to the
- * constructor.
+ * Copy of the quadrature collection object provided to the constructor.
*/
const dealii::hp::QCollection<q_dim> q_collection;
private:
/**
- * A table in which we store
- * pointers to fe_values
- * objects for different
- * finite element, mapping,
- * and quadrature objects
- * from our collection. The
- * first index indicates the
- * index of the finite
- * element within the
- * fe_collection, the second
- * the index of the mapping
- * within the mapping
- * collection, and the last
- * one the index of the
- * quadrature formula within
- * the q_collection.
+ * A table in which we store pointers to fe_values objects for different
+ * finite element, mapping, and quadrature objects from our
+ * collection. The first index indicates the index of the finite element
+ * within the fe_collection, the second the index of the mapping within
+ * the mapping collection, and the last one the index of the quadrature
+ * formula within the q_collection.
*
- * Initially, all entries
- * have zero pointers, and we
- * will allocate them lazily
- * as needed in
- * select_fe_values().
+ * Initially, all entries have zero pointers, and we will allocate them
+ * lazily as needed in select_fe_values().
*/
Table<3,std_cxx1x::shared_ptr<FEValues> > fe_values_table;
/**
- * Set of indices pointing at
- * the fe_values object
- * selected last time the
- * select_fe_value() function
- * was called.
+ * Set of indices pointing at the fe_values object selected last time
+ * the select_fe_value() function was called.
*/
TableIndices<3> present_fe_values_index;
/**
- * Values of the update flags as
- * given to the constructor.
+ * Values of the update flags as given to the constructor.
*/
const UpdateFlags update_flags;
};
static const unsigned int space_dimension = spacedim;
/**
- * Constructor. Initialize this
- * object with the given
- * parameters.
+ * Constructor. Initialize this object with the given parameters.
*
- * The finite element
- * collection parameter is
- * actually ignored, but is in
- * the signature of this
- * function to make it
- * compatible with the
- * signature of the respective
- * constructor of the usual
- * FEValues object, with
- * the respective parameter in
- * that function also being the
- * return value of the
- * <tt>DoFHandler::get_fe()</tt>
- * function.
+ * The finite element collection parameter is actually ignored, but is in
+ * the signature of this function to make it compatible with the signature
+ * of the respective constructor of the usual FEValues object, with the
+ * respective parameter in that function also being the return value of
+ * the <tt>DoFHandler::get_fe()</tt> function.
*/
FEValues (const dealii::hp::MappingCollection<dim,spacedim> &mapping_collection,
const dealii::hp::FECollection<dim,spacedim> &fe_collection,
/**
- * Constructor. Initialize this
- * object with the given
- * parameters, and choose a
- * @p MappingQ1 object for the
- * mapping object.
+ * Constructor. Initialize this object with the given parameters, and
+ * choose a @p MappingQ1 object for the mapping object.
*
- * The finite element
- * collection parameter is
- * actually ignored, but is in
- * the signature of this
- * function to make it
- * compatible with the
- * signature of the respective
- * constructor of the usual
- * FEValues object, with
- * the respective parameter in
- * that function also being the
- * return value of the
- * <tt>DoFHandler::get_fe()</tt>
- * function.
+ * The finite element collection parameter is actually ignored, but is in
+ * the signature of this function to make it compatible with the signature
+ * of the respective constructor of the usual FEValues object, with the
+ * respective parameter in that function also being the return value of
+ * the <tt>DoFHandler::get_fe()</tt> function.
*/
FEValues (const hp::FECollection<dim,spacedim> &fe_collection,
const hp::QCollection<dim> &q_collection,
/**
- * Reinitialize the object for
- * the given cell.
+ * Reinitialize the object for the given cell.
*
- * After the call, you can get
- * an FEValues object using the
- * get_present_fe_values()
- * function that corresponds to
- * the present cell. For this
- * FEValues object, we use the
- * additional arguments
- * described below to determine
- * which finite element,
- * mapping, and quadrature
- * formula to use. They are
- * order in such a way that the
- * arguments one may want to
- * change most frequently come
- * first. The rules for these
- * arguments are as follows:
+ * After the call, you can get an FEValues object using the
+ * get_present_fe_values() function that corresponds to the present
+ * cell. For this FEValues object, we use the additional arguments
+ * described below to determine which finite element, mapping, and
+ * quadrature formula to use. They are order in such a way that the
+ * arguments one may want to change most frequently come first. The rules
+ * for these arguments are as follows:
*
- * If the @p fe_index argument
- * to this function is left at
- * its default value, then we
- * use that finite element
- * within the hp::FECollection
- * passed to the constructor of
- * this class with index given
- * by
- * <code>cell-@>active_fe_index()</code>. Consequently,
- * the hp::FECollection
- * argument given to this
- * object should really be the
- * same as that used in the
- * construction of the
- * hp::DofHandler associated
- * with the present cell. On
- * the other hand, if a value
- * is given for this argument,
- * it overrides the choice of
+ * If the @p fe_index argument to this function is left at its default
+ * value, then we use that finite element within the hp::FECollection
+ * passed to the constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>. Consequently, the
+ * hp::FECollection argument given to this object should really be the
+ * same as that used in the construction of the hp::DofHandler associated
+ * with the present cell. On the other hand, if a value is given for this
+ * argument, it overrides the choice of
* <code>cell-@>active_fe_index()</code>.
*
- * If the @p q_index argument
- * is left at its default
- * value, then we use that
- * quadrature formula within
- * the hp::QCollection passed
- * to the constructor of this
- * class with index given by
- * <code>cell-@>active_fe_index()</code>,
- * i.e. the same index as that
- * of the finite element. In
- * this case, there should be a
- * corresponding quadrature
- * formula for each finite
- * element in the
- * hp::FECollection. As a
- * special case, if the
- * quadrature collection
- * contains only a single
- * element (a frequent case if
- * one wants to use the same
- * quadrature object for all
- * finite elements in an hp
- * discretization, even if that
- * may not be the most
- * efficient), then this single
- * quadrature is used unless a
- * different value for this
- * argument is specified. On
- * the other hand, if a value
- * is given for this argument,
- * it overrides the choice of
- * <code>cell-@>active_fe_index()</code>
- * or the choice for the single
+ * If the @p q_index argument is left at its default value, then we use
+ * that quadrature formula within the hp::QCollection passed to the
+ * constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>, i.e. the same index as that of
+ * the finite element. In this case, there should be a corresponding
+ * quadrature formula for each finite element in the hp::FECollection. As
+ * a special case, if the quadrature collection contains only a single
+ * element (a frequent case if one wants to use the same quadrature object
+ * for all finite elements in an hp discretization, even if that may not
+ * be the most efficient), then this single quadrature is used unless a
+ * different value for this argument is specified. On the other hand, if a
+ * value is given for this argument, it overrides the choice of
+ * <code>cell-@>active_fe_index()</code> or the choice for the single
* quadrature.
*
- * If the @p mapping_index
- * argument is left at its
- * default value, then we use
- * that mapping object within
- * the hp::MappingCollection
- * passed to the constructor of
- * this class with index given
- * by
- * <code>cell-@>active_fe_index()</code>,
- * i.e. the same index as that
- * of the finite
- * element. As above, if the
- * mapping collection contains
- * only a single element (a
- * frequent case if one wants
- * to use a MappingQ1 object
- * for all finite elements in
- * an hp discretization), then
- * this single mapping is used
- * unless a different value for
- * this argument is specified.
+ * If the @p mapping_index argument is left at its default value, then we
+ * use that mapping object within the hp::MappingCollection passed to the
+ * constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>, i.e. the same index as that of
+ * the finite element. As above, if the mapping collection contains only a
+ * single element (a frequent case if one wants to use a MappingQ1 object
+ * for all finite elements in an hp discretization), then this single
+ * mapping is used unless a different value for this argument is
+ * specified.
*/
template <class DH, bool lda>
void
const unsigned int fe_index = numbers::invalid_unsigned_int);
/**
- * Like the previous function,
- * but for non-hp
- * iterators. The reason this
- * (and the other non-hp
- * iterator) function exists is
- * so that one can use
- * hp::FEValues not only for
- * hp::DoFhandler objects, but
- * for all sorts of DoFHandler
- * objects, and triangulations
- * not associated with
- * DoFHandlers in general.
+ * Like the previous function, but for non-hp iterators. The reason this
+ * (and the other non-hp iterator) function exists is so that one can use
+ * hp::FEValues not only for hp::DoFhandler objects, but for all sorts of
+ * DoFHandler objects, and triangulations not associated with DoFHandlers
+ * in general.
*
- * Since
- * <code>cell-@>active_fe_index()</code>
- * doesn't make sense for
- * triangulation iterators,
- * this function chooses the
- * zero-th finite element,
- * mapping, and quadrature
- * object from the relevant
- * constructions passed to the
- * constructor of this
- * object. The only exception
- * is if you specify a value
- * different from the default
- * value for any of these last
+ * Since <code>cell-@>active_fe_index()</code> doesn't make sense for
+ * triangulation iterators, this function chooses the zero-th finite
+ * element, mapping, and quadrature object from the relevant constructions
+ * passed to the constructor of this object. The only exception is if you
+ * specify a value different from the default value for any of these last
* three arguments.
*/
void
{
public:
/**
- * Constructor. Initialize this
- * object with the given
- * parameters.
+ * Constructor. Initialize this object with the given parameters.
*
- * The finite element
- * collection parameter is
- * actually ignored, but is in
- * the signature of this
- * function to make it
- * compatible with the
- * signature of the respective
- * constructor of the usual
- * FEValues object, with
- * the respective parameter in
- * that function also being the
- * return value of the
- * <tt>DoFHandler::get_fe()</tt>
- * function.
+ * The finite element collection parameter is actually ignored, but is in
+ * the signature of this function to make it compatible with the signature
+ * of the respective constructor of the usual FEValues object, with the
+ * respective parameter in that function also being the return value of
+ * the <tt>DoFHandler::get_fe()</tt> function.
*/
FEFaceValues (const hp::MappingCollection<dim,spacedim> &mapping_collection,
const hp::FECollection<dim,spacedim> &fe_collection,
/**
- * Constructor. Initialize this
- * object with the given
- * parameters, and choose a
- * @p MappingQ1 object for the
- * mapping object.
+ * Constructor. Initialize this object with the given parameters, and
+ * choose a @p MappingQ1 object for the mapping object.
*
- * The finite element
- * collection parameter is
- * actually ignored, but is in
- * the signature of this
- * function to make it
- * compatible with the
- * signature of the respective
- * constructor of the usual
- * FEValues object, with
- * the respective parameter in
- * that function also being the
- * return value of the
- * <tt>DoFHandler::get_fe()</tt>
- * function.
+ * The finite element collection parameter is actually ignored, but is in
+ * the signature of this function to make it compatible with the signature
+ * of the respective constructor of the usual FEValues object, with the
+ * respective parameter in that function also being the return value of
+ * the <tt>DoFHandler::get_fe()</tt> function.
*/
FEFaceValues (const hp::FECollection<dim,spacedim> &fe_collection,
const hp::QCollection<dim-1> &q_collection,
const UpdateFlags update_flags);
/**
- * Reinitialize the object for
- * the given cell and face.
+ * Reinitialize the object for the given cell and face.
*
- * After the call, you can get
- * an FEFaceValues object using the
- * get_present_fe_values()
- * function that corresponds to
- * the present cell. For this
- * FEFaceValues object, we use the
- * additional arguments
- * described below to determine
- * which finite element,
- * mapping, and quadrature
- * formula to use. They are
- * order in such a way that the
- * arguments one may want to
- * change most frequently come
- * first. The rules for these
- * arguments are as follows:
+ * After the call, you can get an FEFaceValues object using the
+ * get_present_fe_values() function that corresponds to the present
+ * cell. For this FEFaceValues object, we use the additional arguments
+ * described below to determine which finite element, mapping, and
+ * quadrature formula to use. They are order in such a way that the
+ * arguments one may want to change most frequently come first. The rules
+ * for these arguments are as follows:
*
- * If the @p fe_index argument
- * to this function is left at
- * its default value, then we
- * use that finite element
- * within the hp::FECollection
- * passed to the constructor of
- * this class with index given
- * by
- * <code>cell-@>active_fe_index()</code>. Consequently,
- * the hp::FECollection
- * argument given to this
- * object should really be the
- * same as that used in the
- * construction of the
- * hp::DofHandler associated
- * with the present cell. On
- * the other hand, if a value
- * is given for this argument,
- * it overrides the choice of
+ * If the @p fe_index argument to this function is left at its default
+ * value, then we use that finite element within the hp::FECollection
+ * passed to the constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>. Consequently, the
+ * hp::FECollection argument given to this object should really be the
+ * same as that used in the construction of the hp::DofHandler associated
+ * with the present cell. On the other hand, if a value is given for this
+ * argument, it overrides the choice of
* <code>cell-@>active_fe_index()</code>.
*
- * If the @p q_index argument
- * is left at its default
- * value, then we use that
- * quadrature formula within
- * the hp::QCollection passed
- * to the constructor of this
- * class with index given by
- * <code>cell-@>active_fe_index()</code>,
- * i.e. the same index as that
- * of the finite element. In
- * this case, there should be a
- * corresponding quadrature
- * formula for each finite
- * element in the
- * hp::FECollection. As a
- * special case, if the
- * quadrature collection
- * contains only a single
- * element (a frequent case if
- * one wants to use the same
- * quadrature object for all
- * finite elements in an hp
- * discretization, even if that
- * may not be the most
- * efficient), then this single
- * quadrature is used unless a
- * different value for this
- * argument is specified. On
- * the other hand, if a value
- * is given for this argument,
- * it overrides the choice of
- * <code>cell-@>active_fe_index()</code>
- * or the choice for the single
+ * If the @p q_index argument is left at its default value, then we use
+ * that quadrature formula within the hp::QCollection passed to the
+ * constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>, i.e. the same index as that of
+ * the finite element. In this case, there should be a corresponding
+ * quadrature formula for each finite element in the hp::FECollection. As
+ * a special case, if the quadrature collection contains only a single
+ * element (a frequent case if one wants to use the same quadrature object
+ * for all finite elements in an hp discretization, even if that may not
+ * be the most efficient), then this single quadrature is used unless a
+ * different value for this argument is specified. On the other hand, if a
+ * value is given for this argument, it overrides the choice of
+ * <code>cell-@>active_fe_index()</code> or the choice for the single
* quadrature.
*
- * If the @p mapping_index
- * argument is left at its
- * default value, then we use
- * that mapping object within
- * the hp::MappingCollection
- * passed to the constructor of
- * this class with index given
- * by
- * <code>cell-@>active_fe_index()</code>,
- * i.e. the same index as that
- * of the finite
- * element. As above, if the
- * mapping collection contains
- * only a single element (a
- * frequent case if one wants
- * to use a MappingQ1 object
- * for all finite elements in
- * an hp discretization), then
- * this single mapping is used
- * unless a different value for
- * this argument is specified.
+ * If the @p mapping_index argument is left at its default value, then we
+ * use that mapping object within the hp::MappingCollection passed to the
+ * constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>, i.e. the same index as that of
+ * the finite element. As above, if the mapping collection contains only a
+ * single element (a frequent case if one wants to use a MappingQ1 object
+ * for all finite elements in an hp discretization), then this single
+ * mapping is used unless a different value for this argument is
+ * specified.
*/
template <class DH, bool lda>
void
const unsigned int fe_index = numbers::invalid_unsigned_int);
/**
- * Like the previous function,
- * but for non-hp
- * iterators. The reason this
- * (and the other non-hp
- * iterator) function exists is
- * so that one can use
- * hp::FEValues not only for
- * hp::DoFhandler objects, but
- * for all sorts of DoFHandler
- * objects, and triangulations
- * not associated with
- * DoFHandlers in general.
+ * Like the previous function, but for non-hp iterators. The reason this
+ * (and the other non-hp iterator) function exists is so that one can use
+ * hp::FEValues not only for hp::DoFhandler objects, but for all sorts of
+ * DoFHandler objects, and triangulations not associated with DoFHandlers
+ * in general.
*
- * Since
- * <code>cell-@>active_fe_index()</code>
- * doesn't make sense for
- * triangulation iterators,
- * this function chooses the
- * zero-th finite element,
- * mapping, and quadrature
- * object from the relevant
- * constructions passed to the
- * constructor of this
- * object. The only exception
- * is if you specify a value
- * different from the default
- * value for any of these last
+ * Since <code>cell-@>active_fe_index()</code> doesn't make sense for
+ * triangulation iterators, this function chooses the zero-th finite
+ * element, mapping, and quadrature object from the relevant constructions
+ * passed to the constructor of this object. The only exception is if you
+ * specify a value different from the default value for any of these last
* three arguments.
*/
void
{
public:
/**
- * Constructor. Initialize this
- * object with the given
- * parameters.
+ * Constructor. Initialize this object with the given parameters.
*
- * The finite element
- * collection parameter is
- * actually ignored, but is in
- * the signature of this
- * function to make it
- * compatible with the
- * signature of the respective
- * constructor of the usual
- * FEValues object, with
- * the respective parameter in
- * that function also being the
- * return value of the
- * <tt>DoFHandler::get_fe()</tt>
- * function.
+ * The finite element collection parameter is actually ignored, but is in
+ * the signature of this function to make it compatible with the signature
+ * of the respective constructor of the usual FEValues object, with the
+ * respective parameter in that function also being the return value of
+ * the <tt>DoFHandler::get_fe()</tt> function.
*/
FESubfaceValues (const hp::MappingCollection<dim,spacedim> &mapping_collection,
const hp::FECollection<dim,spacedim> &fe_collection,
/**
- * Constructor. Initialize this
- * object with the given
- * parameters, and choose a
- * @p MappingQ1 object for the
- * mapping object.
+ * Constructor. Initialize this object with the given parameters, and
+ * choose a @p MappingQ1 object for the mapping object.
*
- * The finite element
- * collection parameter is
- * actually ignored, but is in
- * the signature of this
- * function to make it
- * compatible with the
- * signature of the respective
- * constructor of the usual
- * FEValues object, with
- * the respective parameter in
- * that function also being the
- * return value of the
- * <tt>DoFHandler::get_fe()</tt>
- * function.
+ * The finite element collection parameter is actually ignored, but is in
+ * the signature of this function to make it compatible with the signature
+ * of the respective constructor of the usual FEValues object, with the
+ * respective parameter in that function also being the return value of
+ * the <tt>DoFHandler::get_fe()</tt> function.
*/
FESubfaceValues (const hp::FECollection<dim,spacedim> &fe_collection,
const hp::QCollection<dim-1> &q_collection,
const UpdateFlags update_flags);
/**
- * Reinitialize the object for
- * the given cell, face, and subface.
+ * Reinitialize the object for the given cell, face, and subface.
*
- * After the call, you can get
- * an FESubfaceValues object using the
- * get_present_fe_values()
- * function that corresponds to
- * the present cell. For this
- * FESubfaceValues object, we use the
- * additional arguments
- * described below to determine
- * which finite element,
- * mapping, and quadrature
- * formula to use. They are
- * order in such a way that the
- * arguments one may want to
- * change most frequently come
- * first. The rules for these
- * arguments are as follows:
+ * After the call, you can get an FESubfaceValues object using the
+ * get_present_fe_values() function that corresponds to the present
+ * cell. For this FESubfaceValues object, we use the additional arguments
+ * described below to determine which finite element, mapping, and
+ * quadrature formula to use. They are order in such a way that the
+ * arguments one may want to change most frequently come first. The rules
+ * for these arguments are as follows:
*
- * If the @p q_index argument
- * is left at its default
- * value, then we use that
- * quadrature formula within
- * the hp::QCollection passed
- * to the constructor of this
- * class with index given by
- * <code>cell-@>active_fe_index()</code>,
- * i.e. the same index as that
- * of the finite element. In
- * this case, there should be a
- * corresponding quadrature
- * formula for each finite
- * element in the
- * hp::FECollection. As a
- * special case, if the
- * quadrature collection
- * contains only a single
- * element (a frequent case if
- * one wants to use the same
- * quadrature object for all
- * finite elements in an hp
- * discretization, even if that
- * may not be the most
- * efficient), then this single
- * quadrature is used unless a
- * different value for this
- * argument is specified. On
- * the other hand, if a value
- * is given for this argument,
- * it overrides the choice of
- * <code>cell-@>active_fe_index()</code>
- * or the choice for the single
+ * If the @p q_index argument is left at its default value, then we use
+ * that quadrature formula within the hp::QCollection passed to the
+ * constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>, i.e. the same index as that of
+ * the finite element. In this case, there should be a corresponding
+ * quadrature formula for each finite element in the hp::FECollection. As
+ * a special case, if the quadrature collection contains only a single
+ * element (a frequent case if one wants to use the same quadrature object
+ * for all finite elements in an hp discretization, even if that may not
+ * be the most efficient), then this single quadrature is used unless a
+ * different value for this argument is specified. On the other hand, if a
+ * value is given for this argument, it overrides the choice of
+ * <code>cell-@>active_fe_index()</code> or the choice for the single
* quadrature.
*
- * If the @p mapping_index
- * argument is left at its
- * default value, then we use
- * that mapping object within
- * the hp::MappingCollection
- * passed to the constructor of
- * this class with index given
- * by
- * <code>cell-@>active_fe_index()</code>,
- * i.e. the same index as that
- * of the finite
- * element. As above, if the
- * mapping collection contains
- * only a single element (a
- * frequent case if one wants
- * to use a MappingQ1 object
- * for all finite elements in
- * an hp discretization), then
- * this single mapping is used
- * unless a different value for
- * this argument is specified.
+ * If the @p mapping_index argument is left at its default value, then we
+ * use that mapping object within the hp::MappingCollection passed to the
+ * constructor of this class with index given by
+ * <code>cell-@>active_fe_index()</code>, i.e. the same index as that of
+ * the finite element. As above, if the mapping collection contains only a
+ * single element (a frequent case if one wants to use a MappingQ1 object
+ * for all finite elements in an hp discretization), then this single
+ * mapping is used unless a different value for this argument is
+ * specified.
*/
template <class DH, bool lda>
void
const unsigned int fe_index = numbers::invalid_unsigned_int);
/**
- * Like the previous function,
- * but for non-hp
- * iterators. The reason this
- * (and the other non-hp
- * iterator) function exists is
- * so that one can use
- * hp::FEValues not only for
- * hp::DoFhandler objects, but
- * for all sorts of DoFHandler
- * objects, and triangulations
- * not associated with
- * DoFHandlers in general.
+ * Like the previous function, but for non-hp iterators. The reason this
+ * (and the other non-hp iterator) function exists is so that one can use
+ * hp::FEValues not only for hp::DoFhandler objects, but for all sorts of
+ * DoFHandler objects, and triangulations not associated with DoFHandlers
+ * in general.
*
- * Since
- * <code>cell-@>active_fe_index()</code>
- * doesn't make sense for
- * triangulation iterators,
- * this function chooses the
- * zero-th finite element,
- * mapping, and quadrature
- * object from the relevant
- * constructions passed to the
- * constructor of this
- * object. The only exception
- * is if you specify a value
- * different from the default
- * value for any of these last
+ * Since <code>cell-@>active_fe_index()</code> doesn't make sense for
+ * triangulation iterators, this function chooses the zero-th finite
+ * element, mapping, and quadrature object from the relevant constructions
+ * passed to the constructor of this object. The only exception is if you
+ * specify a value different from the default value for any of these last
* three arguments.
*/
void
#include <deal.II/base/smartpointer.h>
#include <deal.II/base/data_out_base.h>
#include <deal.II/dofs/dof_handler.h>
+#include <deal.II/grid/tria.h>
#include <deal.II/fe/mapping.h>
#include <deal.II/hp/q_collection.h>
#include <deal.II/hp/fe_collection.h>
namespace DataOut
{
/**
- * For each vector that has been added
- * through the add_data_vector()
- * functions, we need to keep track of a
- * pointer to it, and allow data
- * extraction from it when we generate
- * patches. Unfortunately, we need to do
- * this for a number of different vector
- * types. Fortunately, they all have the
- * same interface. So the way we go is to
- * have a base class that provides the
- * functions to access the vector's
- * information, and to have a derived
- * template class that can be
- * instantiated for each vector
- * type. Since the vectors all have the
- * same interface, this is no big
- * problem, as they can all use the same
- * general templatized code.
+ * For each vector that has been added through the add_data_vector()
+ * functions, we need to keep track of a pointer to it, and allow data
+ * extraction from it when we generate patches. Unfortunately, we need to
+ * do this for a number of different vector types. Fortunately, they all
+ * have the same interface. So the way we go is to have a base class that
+ * provides the functions to access the vector's information, and to have
+ * a derived template class that can be instantiated for each vector
+ * type. Since the vectors all have the same interface, this is no big
+ * problem, as they can all use the same general templatized code.
*
* @author Wolfgang Bangerth, 2004
*/
{
public:
/**
- * Constructor. Give a list of names
- * for the individual components of
- * the vector and their
- * interpretation as scalar or vector
- * data. This constructor assumes
- * that no postprocessor is going to
- * be used.
+ * Constructor. Give a list of names for the individual components of
+ * the vector and their interpretation as scalar or vector data. This
+ * constructor assumes that no postprocessor is going to be used.
*/
- DataEntryBase (const std::vector<std::string> &names,
+ DataEntryBase (const DH *dofs,
+ const std::vector<std::string> &names,
const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation);
/**
- * Constructor when a data
- * postprocessor is going to be
- * used. In that case, the names and
- * vector declarations are going to
- * be acquired from the postprocessor.
+ * Constructor when a data postprocessor is going to be used. In that
+ * case, the names and vector declarations are going to be acquired from
+ * the postprocessor.
*/
- DataEntryBase (const DataPostprocessor<DH::space_dimension> *data_postprocessor);
+ DataEntryBase (const DH *dofs,
+ const DataPostprocessor<DH::space_dimension> *data_postprocessor);
/**
* Destructor made virtual.
virtual ~DataEntryBase ();
/**
- * Assuming that the stored vector is
- * a cell vector, extract the given
+ * Assuming that the stored vector is a cell vector, extract the given
* element from it.
*/
virtual
get_cell_data_value (const unsigned int cell_number) const = 0;
/**
- * Given a FEValuesBase object,
- * extract the values on the present
- * cell from the vector we actually
- * store.
+ * Given a FEValuesBase object, extract the values on the present cell
+ * from the vector we actually store.
*/
virtual
void
std::vector<double> &patch_values) const = 0;
/**
- * Given a FEValuesBase object,
- * extract the values on the present
- * cell from the vector we actually
- * store. This function does the same
- * as the one above but for
- * vector-valued finite elements.
+ * Given a FEValuesBase object, extract the values on the present cell
+ * from the vector we actually store. This function does the same as the
+ * one above but for vector-valued finite elements.
*/
virtual
void
std::vector<dealii::Vector<double> > &patch_values_system) const = 0;
/**
- * Given a FEValuesBase object,
- * extract the gradients on the present
- * cell from the vector we actually
- * store.
+ * Given a FEValuesBase object, extract the gradients on the present
+ * cell from the vector we actually store.
*/
virtual
void
std::vector<Tensor<1,DH::space_dimension> > &patch_gradients) const = 0;
/**
- * Given a FEValuesBase object,
- * extract the gradients on the present
- * cell from the vector we actually
- * store. This function does the same
- * as the one above but for
- * vector-valued finite elements.
+ * Given a FEValuesBase object, extract the gradients on the present
+ * cell from the vector we actually store. This function does the same
+ * as the one above but for vector-valued finite elements.
*/
virtual
void
std::vector<std::vector<Tensor<1,DH::space_dimension> > > &patch_gradients_system) const = 0;
/**
- * Given a FEValuesBase object, extract
- * the second derivatives on the
- * present cell from the vector we
- * actually store.
+ * Given a FEValuesBase object, extract the second derivatives on the
+ * present cell from the vector we actually store.
*/
virtual
void
std::vector<Tensor<2,DH::space_dimension> > &patch_hessians) const = 0;
/**
- * Given a FEValuesBase object, extract
- * the second derivatives on the
- * present cell from the vector we
- * actually store. This function does
- * the same as the one above but for
- * vector-valued finite elements.
+ * Given a FEValuesBase object, extract the second derivatives on the
+ * present cell from the vector we actually store. This function does
+ * the same as the one above but for vector-valued finite elements.
*/
virtual
void
std::vector<std::vector< Tensor<2,DH::space_dimension> > > &patch_hessians_system) const = 0;
/**
- * Clear all references to the
- * vectors.
+ * Clear all references to the vectors.
*/
virtual void clear () = 0;
/**
- * Determine an estimate for
- * the memory consumption (in
- * bytes) of this object.
+ * Determine an estimate for the memory consumption (in bytes) of this
+ * object.
*/
virtual std::size_t memory_consumption () const = 0;
/**
- * Names of the components of this
- * data vector.
+ * Pointer to the DoFHandler object that the vector is based on.
+ */
+ SmartPointer<const DH> dof_handler;
+
+ /**
+ * Names of the components of this data vector.
*/
const std::vector<std::string> names;
/**
- * A vector that for each of the
- * n_output_variables variables of
- * the current data set indicates
- * whether they are scalar fields,
- * parts of a vector-field, or any of
- * the other supported kinds of data.
+ * A vector that for each of the n_output_variables variables of the
+ * current data set indicates whether they are scalar fields, parts of a
+ * vector-field, or any of the other supported kinds of data.
*/
const std::vector<DataComponentInterpretation::DataComponentInterpretation>
data_component_interpretation;
/**
- * Pointer to a DataPostprocessing
- * object which shall be applied to
- * this data vector.
+ * Pointer to a DataPostprocessing object which shall be applied to this
+ * data vector.
*/
SmartPointer<const dealii::DataPostprocessor<DH::space_dimension> > postprocessor;
/**
- * Number of output variables this
- * dataset provides (either number of
- * components in vector valued function
- * / data vector or number of computed
- * quantities, if DataPostprocessor is
- * applied). This variable is
- * determined via and thus equivalent
- * to <tt>names.size()</tt>.
+ * Number of output variables this dataset provides (either number of
+ * components in vector valued function / data vector or number of
+ * computed quantities, if DataPostprocessor is applied). This variable
+ * is determined via and thus equivalent to <tt>names.size()</tt>.
*/
unsigned int n_output_variables;
};
/**
- * A data structure that holds
- * all data needed in one thread
- * when building patches in
- * parallel. These data
- * structures are created
- * globally rather than on each
- * cell to avoid allocation of
- * memory in the threads. This is
- * a base class for the
- * AdditionalData kind of data
- * structure discussed in the
- * documentation of the
- * WorkStream class.
+ * A data structure that holds all data needed in one thread when building
+ * patches in parallel. These data structures are created globally rather
+ * than on each cell to avoid allocation of memory in the threads. This is
+ * a base class for the AdditionalData kind of data structure discussed in
+ * the documentation of the WorkStream class.
*
- * The
- * <code>cell_to_patch_index_map</code>
- * is an array that stores for index
- * <tt>[i][j]</tt> the number of the
- * patch that associated with the cell
- * with index @p j on level @p i. This
- * information is set up prior to
- * generation of the patches, and is
- * needed to generate neighborship
+ * The <code>cell_to_patch_index_map</code> is an array that stores for
+ * index <tt>[i][j]</tt> the number of the patch that associated with the
+ * cell with index @p j on level @p i. This information is set up prior to
+ * generation of the patches, and is needed to generate neighborship
* information.
*
- * This structure is used by
- * several of the DataOut*
- * classes, which derived their
- * own ParallelData classes from
- * it for additional fields.
+ * This structure is used by several of the DataOut* classes, which
+ * derived their own ParallelData classes from it for additional fields.
*/
template <int dim, int spacedim>
struct ParallelDataBase
{
- template <class FE>
- ParallelDataBase (const unsigned int n_components,
- const unsigned int n_datasets,
+ ParallelDataBase (const unsigned int n_datasets,
const unsigned int n_subdivisions,
- const unsigned int n_q_points,
const std::vector<unsigned int> &n_postprocessor_outputs,
- const FE &finite_elements);
+ const Mapping<dim,spacedim> &mapping,
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
+ const UpdateFlags update_flags,
+ const bool use_face_values);
+
+ ParallelDataBase (const ParallelDataBase &data);
+
+ template <typename DH>
+ void reinit_all_fe_values(std::vector<std_cxx1x::shared_ptr<DataEntryBase<DH> > > &dof_data,
+ const typename dealii::Triangulation<dim,spacedim>::cell_iterator &cell,
+ const unsigned int face = numbers::invalid_unsigned_int);
+
+ const FEValuesBase<dim,spacedim> &
+ get_present_fe_values(const unsigned int dataset) const;
+
+ void resize_system_vectors(const unsigned int n_components);
- const unsigned int n_components;
const unsigned int n_datasets;
const unsigned int n_subdivisions;
std::vector<std::vector<Tensor<2,spacedim> > > patch_hessians_system;
std::vector<std::vector<dealii::Vector<double> > > postprocessed_values;
- const dealii::hp::FECollection<dim,spacedim> fe_collection;
+ const dealii::hp::MappingCollection<dim,spacedim> mapping_collection;
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > finite_elements;
+ const UpdateFlags update_flags;
+
+ std::vector<std_cxx1x::shared_ptr<dealii::hp::FEValues<dim,spacedim> > > x_fe_values;
+ std::vector<std_cxx1x::shared_ptr<dealii::hp::FEFaceValues<dim,spacedim> > > x_fe_face_values;
};
/**
- * A derived class for use in the
- * DataOut class. This is
- * a class for the
- * AdditionalData kind of data
- * structure discussed in the
- * documentation of the
- * WorkStream context.
+ * A derived class for use in the DataOut class. This is a class for the
+ * AdditionalData kind of data structure discussed in the documentation of
+ * the WorkStream context.
*/
template <int dim, int spacedim>
struct ParallelData : public ParallelDataBase<dim,spacedim>
{
- template <class FE>
- ParallelData (const Quadrature<dim> &quadrature,
- const unsigned int n_components,
- const unsigned int n_datasets,
+ ParallelData (const unsigned int n_datasets,
const unsigned int n_subdivisions,
const std::vector<unsigned int> &n_postprocessor_outputs,
const Mapping<dim,spacedim> &mapping,
- const std::vector<std::vector<unsigned int> > &cell_to_patch_index_map,
- const FE &finite_elements,
- const UpdateFlags update_flags);
-
- const dealii::hp::QCollection<dim> q_collection;
- const dealii::hp::MappingCollection<dim,spacedim> mapping_collection;
- dealii::hp::FEValues<dim,spacedim> x_fe_values;
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
+ const UpdateFlags update_flags,
+ const std::vector<std::vector<unsigned int> > &cell_to_patch_index_map);
std::vector<Point<spacedim> > patch_evaluation_points;
//TODO: Most of the documentation of DataOut_DoFData applies to DataOut.
/**
- * This is an abstract class which provides the functionality to
- * generate patches for output by base classes from data vectors on a
- * grid. It allows to store a pointer to a DoFHandler object and one
- * or more pointers to node and cell data denoting functions on the
- * grid which shall later be written in any of the implemented data
- * formats.
+ * This is an abstract class which provides the functionality to generate
+ * patches for output by base classes from data vectors on a grid. It allows
+ * to store one or more pointers to a DoFHandler and attached node and cell
+ * data denoting functions on the grid which shall later be written in any of
+ * the implemented data formats.
*
*
* <h3>User visible interface</h3>
*
- * The user visible interface of this class consists of functions which allow
- * a user to make a DoFHandler object known to this class and to add data
- * vectors which will later be written to a file in some format. Instead of
- * pondering about the different functions, an example is probably the best
- * way:
+ * The user visible interface of this class allows the user to specify data in
+ * two different ways. One is to make a DoFHandler object known to this class
+ * and to add data vectors that all correspond to this DoFHandler or the grid
+ * cells which will later be written to a file in some format. The second
+ * approach is to pass a DoFHandler object along with the vector. This allows
+ * setting data from different DoFHandlers in a neat way (of course, they both
+ * need to be based on the same triangulation). Instead of pondering about the
+ * different functions, an example for the first kind is probably the best
+ * explanation:
* @code
* ...
* ... // compute solution, which contains nodal values
* function build_patches(). Finally, you write() the data in one format or other,
* to a file.
*
- * Please note, that in the example above, an object of type DataOut was
+ * Please note that in the example above, an object of type DataOut was
* used, i.e. an object of a derived class. This is necessary since this
* class does not provide means to actually generate the patches, only aids to
* store and access data.
public:
/**
- * Typedef to the iterator type
- * of the dof handler class under
+ * Typedef to the iterator type of the dof handler class under
* consideration.
*/
- typedef typename DH::cell_iterator cell_iterator;
- typedef typename DH::active_cell_iterator active_cell_iterator;
+ typedef typename Triangulation<DH::dimension,DH::space_dimension>::cell_iterator cell_iterator;
+ typedef typename Triangulation<DH::dimension,DH::space_dimension>::active_cell_iterator active_cell_iterator;
public:
/**
- * Type describing what the
- * vector given to
- * add_data_vector() is: a
- * vector that has one entry per
- * degree of freedom in a
- * DoFHandler object (such
- * as solution vectors), or one
- * entry per cell in the
- * triangulation underlying the
- * DoFHandler object (such
- * as error per cell data). The
- * value #type_automatic tells
- * add_data_vector() to find
- * out itself (see the
- * documentation of
- * add_data_vector() for the
- * method used).
+ * Type describing what the vector given to add_data_vector() is: a vector
+ * that has one entry per degree of freedom in a DoFHandler object (such as
+ * solution vectors), or one entry per cell in the triangulation underlying
+ * the DoFHandler object (such as error per cell data). The value
+ * #type_automatic tells add_data_vector() to find out itself (see the
+ * documentation of add_data_vector() for the method used).
*/
enum DataVectorType
{
/**
- * Data vector entries are
- * associated to degrees of freedom
+ * Data vector entries are associated to degrees of freedom
*/
type_dof_data,
/**
- * Data vector entries are one per
- * grid cell
+ * Data vector entries are one per grid cell
*/
type_cell_data,
virtual ~DataOut_DoFData ();
/**
- * Designate a dof handler to be
- * used to extract geometry data
- * and the mapping between nodes
- * and node values.
+ * Designate a dof handler to be used to extract geometry data and the
+ * mapping between nodes and node values. This call is not necessary if all
+ * added data vectors are supplemented with a DoFHandler argument.
+ *
+ * This call is optional: If you add data vectors with specified DoFHandler
+ * object, then that contains all information needed to generate the output.
*/
void attach_dof_handler (const DH &);
/**
- * Add a data vector together
- * with its name.
+ * Designate a triangulation to be used to extract geometry data and the
+ * mapping between nodes and node values.
*
- * A pointer to the vector is
- * stored, so you have to make
- * sure the vector exists at that
- * address at least as long as
- * you call the <tt>write_*</tt>
+ * This call is optional: If you add data vectors with specified DoFHandler
+ * object, then that contains all information needed to generate the
+ * output. This call is useful when you only output cell vectors and no
+ * DoFHandler at all, in which case it provides the geometry.
+ */
+ void attach_triangulation (const Triangulation<DH::dimension,
+ DH::space_dimension> &);
+
+ /**
+ * Add a data vector together with its name.
+ *
+ * A pointer to the vector is stored, so you have to make sure the vector
+ * exists at that address at least as long as you call the <tt>write_*</tt>
* functions.
*
- * It is assumed that the vector
- * has the same number of
- * components as there are
- * degrees of freedom in the dof
- * handler, in which case it is
- * assumed to be a vector storing
- * nodal data; or the size may be
- * the number of active cells on
- * the present grid, in which
- * case it is assumed to be a
- * cell data vector. As the
- * number of degrees of freedom
- * and of cells is usually not
- * equal, the function can
- * determine itself which type of
- * vector it is given. However,
- * there are corner cases where
- * this automatic determination
- * does not work. One example is
- * if you compute with piecewise
- * constant elements and have a
- * scalar solution, then there
- * are as many cells as there are
- * degrees of freedom (though
- * they may be numbered
- * differently). Another
- * possibility is if you have a
- * 1d mesh embedded in 2d space
- * and the mesh consists of a
- * closed curve of cells; in this
- * case, there are as many nodes
- * as there are cells, and when
- * using a Q1 element you will
- * have as many degrees of
- * freedom as there are cells.
- * In these cases, you can change
- * the last argument of the
- * function from its default
- * value #type_automatic to
- * either #type_dof_data or
- * #type_cell_data, depending on
- * what the vector
- * represents. Apart from such
- * corner cases, you can leave
- * the argument at its default
- * value and let the function
- * determine the type of the
- * vector itself.
+ * It is assumed that the vector has the same number of components as there
+ * are degrees of freedom in the dof handler, in which case it is assumed to
+ * be a vector storing nodal data; or the size may be the number of active
+ * cells on the present grid, in which case it is assumed to be a cell data
+ * vector. As the number of degrees of freedom and of cells is usually not
+ * equal, the function can determine itself which type of vector it is
+ * given. However, there are corner cases where this automatic determination
+ * does not work. One example is if you compute with piecewise constant
+ * elements and have a scalar solution, then there are as many cells as
+ * there are degrees of freedom (though they may be numbered
+ * differently). Another possibility is if you have a 1d mesh embedded in 2d
+ * space and the mesh consists of a closed curve of cells; in this case,
+ * there are as many nodes as there are cells, and when using a Q1 element
+ * you will have as many degrees of freedom as there are cells. In these
+ * cases, you can change the last argument of the function from its default
+ * value #type_automatic to either #type_dof_data or #type_cell_data,
+ * depending on what the vector represents. Apart from such corner cases,
+ * you can leave the argument at its default value and let the function
+ * determine the type of the vector itself.
*
- * If it is a vector holding DoF
- * data, the names given shall be
- * one for each component of the
- * underlying finite element. If
- * it is a finite element
- * composed of only one
- * subelement, then there is
- * another function following
- * which takes a single name
- * instead of a vector of names.
+ * If it is a vector holding DoF data, the names given shall be one for each
+ * component of the underlying finite element. If it is a finite element
+ * composed of only one subelement, then there is another function following
+ * which takes a single name instead of a vector of names.
*
- * The data_component_interpretation
- * argument contains information about
- * how the individual components of
- * output files that consist of more than
- * one data set are to be interpreted.
+ * The data_component_interpretation argument contains information about how
+ * the individual components of output files that consist of more than one
+ * data set are to be interpreted.
*
- * For example, if one has a finite
- * element for the Stokes equations in
- * 2d, representing components (u,v,p),
- * one would like to indicate that the
- * first two, u and v, represent a
- * logical vector so that later on when
- * we generate graphical output we can
- * hand them off to a visualization
- * program that will automatically know
- * to render them as a vector field,
- * rather than as two separate and
- * independent scalar fields.
+ * For example, if one has a finite element for the Stokes equations in 2d,
+ * representing components (u,v,p), one would like to indicate that the
+ * first two, u and v, represent a logical vector so that later on when we
+ * generate graphical output we can hand them off to a visualization program
+ * that will automatically know to render them as a vector field, rather
+ * than as two separate and independent scalar fields.
*
- * The default value of this argument
- * (i.e. an empty vector) corresponds is
+ * The default value of this argument (i.e. an empty vector) corresponds is
* equivalent to a vector of values
- * DataComponentInterpretation::component_is_scalar,
- * indicating that all output components
- * are independent scalar
- * fields. However, if the given data
- * vector represents logical vectors, you
- * may pass a vector that contains values
- * DataComponentInterpretation::component_is_part_of_vector. In
- * the example above, one would pass in a
- * vector with components
+ * DataComponentInterpretation::component_is_scalar, indicating that all
+ * output components are independent scalar fields. However, if the given
+ * data vector represents logical vectors, you may pass a vector that
+ * contains values
+ * DataComponentInterpretation::component_is_part_of_vector. In the example
+ * above, one would pass in a vector with components
* (DataComponentInterpretation::component_is_part_of_vector,
* DataComponentInterpretation::component_is_part_of_vector,
- * DataComponentInterpretation::component_is_scalar)
- * for (u,v,p).
+ * DataComponentInterpretation::component_is_scalar) for (u,v,p).
*
- * The names of a data vector
- * shall only contain characters
- * which are letters, underscore
- * and a few other ones. Refer to
- * the ExcInvalidCharacter
- * exception declared in this
- * class to see which characters
- * are valid and which are not.
+ * The names of a data vector shall only contain characters which are
+ * letters, underscore and a few other ones. Refer to the
+ * ExcInvalidCharacter exception declared in this class to see which
+ * characters are valid and which are not.
*
- * @note The actual type for the
- * vector argument may be any
- * vector type from which
- * FEValues can extract values on
- * a cell using the
- * FEValuesBase::get_function_values()
- * function. In particular, this
- * includes all of the usual
- * vector types, but also
- * IndexSet (see step-41 for a
- * use of this).
+ * @note The actual type for the vector argument may be any vector type from
+ * which FEValues can extract values on a cell using the
+ * FEValuesBase::get_function_values() function. In particular, this
+ * includes all of the usual vector types, but also IndexSet (see step-41
+ * for a use of this).
*/
template <class VECTOR>
void add_data_vector (const VECTOR &data,
= std::vector<DataComponentInterpretation::DataComponentInterpretation>());
/**
- * This function is an abbreviation to
- * the above one (see there for a
- * discussion of the various arguments),
- * intended for use with finite elements
- * that are not composed of
- * subelements. In this case, only one
- * name per data vector needs to be
- * given, which is what this function
- * takes. It simply relays its arguments
- * after a conversion of the @p name to a
- * vector of strings, to the other
- * add_data_vector() function above.
+ * This function is an abbreviation to the above one (see there for a
+ * discussion of the various arguments), intended for use with finite
+ * elements that are not composed of subelements. In this case, only one
+ * name per data vector needs to be given, which is what this function
+ * takes. It simply relays its arguments after a conversion of the @p name
+ * to a vector of strings, to the other add_data_vector() function above.
*
- * If @p data is a vector with
- * multiple components this
- * function will generate
- * distinct names for all
- * components by appending an
- * underscore and the number of
- * each component to @p name
+ * If @p data is a vector with multiple components this function will
+ * generate distinct names for all components by appending an underscore and
+ * the number of each component to @p name
*
- * The actual type for the template
- * argument may be any vector type from
- * which FEValues can extract values
- * on a cell using the
+ * The actual type for the template argument may be any vector type from
+ * which FEValues can extract values on a cell using the
* FEValuesBase::get_function_values() function.
*/
template <class VECTOR>
= std::vector<DataComponentInterpretation::DataComponentInterpretation>());
/**
- * This function is an alternative to the
- * above ones, allowing the output of
- * derived quantities instead of the given
- * data. This converison has to be done in
- * a class derived from DataPostprocessor.
+ * This function is an extension of the above one (see there for a
+ * discussion of the arguments except the first one) and allows to set a
+ * vector with its own DoFHandler object. This DoFHandler needs to be
+ * compatible with the other DoFHandler objects assigned with calls to @p
+ * add_data_vector or @p attach_dof_handler, in the sense that the
+ * DoFHandler objects need to be based on the same triangulation. This
+ * function allows you to export data from multiple DoFHandlers that
+ * describe different solution components.
*
- * The names for these derived quantities
- * are provided by the @p
- * data_postprocessor argument. Likewise,
- * the data_component_interpretation
- * argument of the other
- * add_data_vector() functions is
- * provided by the data_postprocessor
- * argument. As only data of type @p
- * type_dof_data can be transformed, this
- * type is also known implicitly and does
- * not have to be given.
+ * Since this function takes a DoFHandler object and hence naturally
+ * represents dof data, the data vector type argument present in the other
+ * methods above is skipped.
+ */
+ template <class VECTOR>
+ void add_data_vector (const DH &dof_handler,
+ const VECTOR &data,
+ const std::vector<std::string> &names,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation
+ = std::vector<DataComponentInterpretation::DataComponentInterpretation>());
+
+
+ /**
+ * This function is an abbreviation of the function above with only a scalar
+ * @p dof_handler given and a single data name.
+ */
+ template <class VECTOR>
+ void add_data_vector (const DH &dof_handler,
+ const VECTOR &data,
+ const std::string &name,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation
+ = std::vector<DataComponentInterpretation::DataComponentInterpretation>());
+
+ /**
+ * This function is an alternative to the above ones, allowing the output of
+ * derived quantities instead of the given data. This converison has to be
+ * done in a class derived from DataPostprocessor.
+ *
+ * The names for these derived quantities are provided by the @p
+ * data_postprocessor argument. Likewise, the data_component_interpretation
+ * argument of the other add_data_vector() functions is provided by the
+ * data_postprocessor argument. As only data of type @p type_dof_data can be
+ * transformed, this type is also known implicitly and does not have to be
+ * given.
*
- * @note The actual type for the
- * vector argument may be any
- * vector type from which
- * FEValues can extract values on
- * a cell using the
- * FEValuesBase::get_function_values()
- * function. In particular, this
- * includes all of the usual
- * vector types, but also
- * IndexSet (see step-41 for a
- * use of this).
+ * @note The actual type for the vector argument may be any vector type from
+ * which FEValues can extract values on a cell using the
+ * FEValuesBase::get_function_values() function. In particular, this
+ * includes all of the usual vector types, but also IndexSet (see step-41
+ * for a use of this).
*/
template <class VECTOR>
void add_data_vector (const VECTOR &data,
const DataPostprocessor<DH::space_dimension> &data_postprocessor);
/**
- * Release the pointers to the
- * data vectors. This allows
- * output of a new set of vectors
- * without supplying the DoF
- * handler again. Therefore, the
- * DataOut object can be used
- * in an algebraic context. Note
- * that besides the data vectors
- * also the patches already
- * computed are deleted.
+ * Same function as above, but with a DoFHandler object that does not need
+ * to coincide with the DoFHandler initially set. Note that the
+ * postprocessor can only read data from the given DoFHandler and solution
+ * vector, not other solution vectors or DoFHandlers.
+ */
+ template <class VECTOR>
+ void add_data_vector (const DH &dof_handler,
+ const VECTOR &data,
+ const DataPostprocessor<DH::space_dimension> &data_postprocessor);
+
+ /**
+ * Release the pointers to the data vectors. This allows output of a new set
+ * of vectors without supplying the DoF handler again. Therefore, the
+ * DataOut object can be used in an algebraic context. Note that besides the
+ * data vectors also the patches already computed are deleted.
*/
void clear_data_vectors ();
/**
- * Release pointers to all input
- * data elements, i.e. pointers
- * to data vectors and to the DoF
- * handler object. This function
- * may be useful when you have
- * called the @p build_patches
- * function of derived class,
- * since then the patches are
- * built and the input data is no
- * more needed, nor is there a
- * need to reference it. You can
- * then output the patches
- * detached from the main thread
- * and need not make sure anymore
- * that the DoF handler object
- * and vectors must not be
- * deleted before the output
- * thread is finished.
+ * Release pointers to all input data elements, i.e. pointers to data
+ * vectors and to the DoF handler object. This function may be useful when
+ * you have called the @p build_patches function of derived class, since
+ * then the patches are built and the input data is no more needed, nor is
+ * there a need to reference it. You can then output the patches detached
+ * from the main thread and need not make sure anymore that the DoF handler
+ * object and vectors must not be deleted before the output thread is
+ * finished.
*/
void clear_input_data_references ();
/**
- * This function can be used to
- * merge the patches that were
- * created using the
- * @p build_patches function of
- * the object given as argument
- * into the list of patches
- * created by this object. This
- * is sometimes handy if one has,
- * for example, a domain
- * decomposition algorithm where
- * each block is represented by a
- * DoFHandler of its own,
- * but one wants to output the
- * solution on all the blocks at
- * the same time.
+ * This function can be used to merge the patches that were created using
+ * the @p build_patches function of the object given as argument into the
+ * list of patches created by this object. This is sometimes handy if one
+ * has, for example, a domain decomposition algorithm where each block is
+ * represented by a DoFHandler of its own, but one wants to output the
+ * solution on all the blocks at the same time.
*
- * For this to work, the given
- * argument and this object need
- * to have the same number of
- * output vectors, and they need
- * to use the same number of
- * subdivisions per patch. The
- * output will probably look
- * rather funny if patches in
- * both objects overlap in space.
+ * For this to work, the given argument and this object need to have the
+ * same number of output vectors, and they need to use the same number of
+ * subdivisions per patch. The output will probably look rather funny if
+ * patches in both objects overlap in space.
*
- * If you call
- * build_patches() for this
- * object after merging in
- * patches, the previous state is
- * overwritten, and the merged-in
- * patches are lost.
+ * If you call build_patches() for this object after merging in patches, the
+ * previous state is overwritten, and the merged-in patches are lost.
*
- * The second parameter allows to
- * shift each node of the patches
- * in the object passed in in the
- * first parameter by a certain
- * amount. This is sometimes
- * useful to generate "exploded"
- * views of a collection of
- * blocks.
+ * The second parameter allows to shift each node of the patches in the
+ * object passed in in the first parameter by a certain amount. This is
+ * sometimes useful to generate "exploded" views of a collection of blocks.
*
- * This function will fail if
- * either this or the other
- * object did not yet set up any
- * patches.
+ * This function will fail if either this or the other object did not yet
+ * set up any patches.
*/
template <class DH2>
void merge_patches (const DataOut_DoFData<DH2,patch_dim,patch_space_dim> &source,
const Point<patch_space_dim> &shift = Point<patch_space_dim>());
/**
- * Release the pointers to the
- * data vectors and the DoF
- * handler. You have to set all
- * data entries again using the
- * add_data_vector()
- * function. The pointer to the
- * dof handler is cleared as
- * well, along with all other
- * data. In effect, this function
- * resets everything to a virgin
- * state.
+ * Release the pointers to the data vectors and the DoF handler. You have to
+ * set all data entries again using the add_data_vector() function. The
+ * pointer to the dof handler is cleared as well, along with all other
+ * data. In effect, this function resets everything to a virgin state.
*/
virtual void clear ();
/**
- * Determine an estimate for the
- * memory consumption (in bytes)
- * of this object.
+ * Determine an estimate for the memory consumption (in bytes) of this
+ * object.
*/
std::size_t memory_consumption () const;
+ /**
+ * Exception
+ */
+ DeclException0 (ExcNoTriangulationSelected);
+
/**
* Exception
*/
DeclException0 (ExcNoDoFHandlerSelected);
+
/**
* Exception
*/
DeclException0 (ExcDataPostprocessingIsNotPossibleForCellData);
+
/**
* Exception
*/
protected:
/**
- * Abbreviate the somewhat lengthy
- * name for the Patch class.
+ * Abbreviate the somewhat lengthy name for the Patch class.
*/
typedef dealii::DataOutBase::Patch<patch_dim,patch_space_dim> Patch;
/**
- * Pointer to the dof handler object.
+ * Pointer to the triangulation object.
+ */
+ SmartPointer<const Triangulation<DH::dimension,DH::space_dimension> > triangulation;
+
+ /**
+ * Pointer to the optional handler object.
*/
- SmartPointer<const DH, DataOut_DoFData<DH,patch_dim,patch_space_dim> > dofs;
+ SmartPointer<const DH> dofs;
/**
- * List of data elements with vectors of
- * values for each degree of freedom.
+ * List of data elements with vectors of values for each degree of freedom.
*/
std::vector<std_cxx1x::shared_ptr<internal::DataOut::DataEntryBase<DH> > > dof_data;
/**
- * List of data elements with vectors of
- * values for each cell.
+ * List of data elements with vectors of values for each cell.
*/
std::vector<std_cxx1x::shared_ptr<internal::DataOut::DataEntryBase<DH> > > cell_data;
/**
- * This is a list of patches that is
- * created each time build_patches()
- * is called. These patches are used
- * in the output routines of the base
+ * This is a list of patches that is created each time build_patches() is
+ * called. These patches are used in the output routines of the base
* classes.
*/
std::vector<Patch> patches;
/**
- * Function by which the base
- * class's functions get to know
- * what patches they shall write
- * to a file.
+ * Function by which the base class's functions get to know what patches
+ * they shall write to a file.
*/
virtual
const std::vector<Patch> &get_patches () const;
/**
- * Virtual function through
- * which the names of data sets are
- * obtained by the output functions
- * of the base class.
+ * Virtual function through which the names of data sets are obtained by the
+ * output functions of the base class.
*/
virtual
std::vector<std::string> get_dataset_names () const;
/**
- * Overload of the respective
- * DataOutInterface::get_vector_data_ranges()
- * function. See there for a more
- * extensive documentation.
+ * Extracts the finite elements stored in the dof_data object, including a
+ * dummy object of FE_DGQ<dim>(0) in case only the triangulation is used.
+ */
+ std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<DH::dimension,DH::space_dimension> > >
+ get_finite_elements() const;
+
+ /**
+ * Overload of the respective DataOutInterface::get_vector_data_ranges()
+ * function. See there for a more extensive documentation.
*/
virtual
std::vector<std_cxx1x::tuple<unsigned int, unsigned int, std::string> >
get_vector_data_ranges () const;
/**
- * Make all template siblings
- * friends. Needed for the
- * merge_patches() function.
+ * Make all template siblings friends. Needed for the merge_patches()
+ * function.
*/
template <class, int, int>
friend class DataOut_DoFData;
{
public:
/**
- * Typedef to the iterator type
- * of the dof handler class under
+ * Typedef to the iterator type of the dof handler class under
* consideration.
*/
typedef typename DataOut_DoFData<DH,DH::dimension,DH::space_dimension>::cell_iterator cell_iterator;
typedef typename DataOut_DoFData<DH,DH::dimension,DH::space_dimension>::active_cell_iterator active_cell_iterator;
/**
- * Enumeration describing the region of the
- * domain in which curved cells shall be
- * created.
+ * Enumeration describing the region of the domain in which curved cells
+ * shall be created.
*/
enum CurvedCellRegion
{
};
/**
- * This is the central function
- * of this class since it builds
- * the list of patches to be
- * written by the low-level
- * functions of the base
- * class. See the general
- * documentation of this class
- * for further information.
+ * This is the central function of this class since it builds the list of
+ * patches to be written by the low-level functions of the base class. See
+ * the general documentation of this class for further information.
*
- * The default value <tt>0</tt>
- * of <tt>n_subdivisions</tt>
- * indicates that the value
- * stored in
- * DataOutInterface::default_subdivisions
- * is to be used.
+ * The default value <tt>0</tt> of <tt>n_subdivisions</tt> indicates that
+ * the value stored in DataOutInterface::default_subdivisions is to be used.
*/
virtual void build_patches (const unsigned int n_subdivisions = 0);
/**
- * Same as above, except that the
- * additional first parameter
- * defines a mapping that is to
- * be used in the generation of
- * output. If
- * <tt>n_subdivisions>1</tt>, the
- * points interior of subdivided
- * patches which originate from
- * cells at the boundary of the
- * domain can be computed using the
- * mapping, i.e. a higher order
- * mapping leads to a
- * representation of a curved
- * boundary by using more
- * subdivisions. Some mappings like
- * MappingQEulerian result in curved cells
- * in the interior of the domain. However,
- * there is nor easy way to get this
- * information from the Mapping. Thus the
- * last argument @p curved_region take one
- * of three values resulting in no curved
- * cells at all, curved cells at the
- * boundary (default) or curved cells in
- * the whole domain.
+ * Same as above, except that the additional first parameter defines a
+ * mapping that is to be used in the generation of output. If
+ * <tt>n_subdivisions>1</tt>, the points interior of subdivided patches
+ * which originate from cells at the boundary of the domain can be computed
+ * using the mapping, i.e. a higher order mapping leads to a representation
+ * of a curved boundary by using more subdivisions. Some mappings like
+ * MappingQEulerian result in curved cells in the interior of the
+ * domain. However, there is nor easy way to get this information from the
+ * Mapping. Thus the last argument @p curved_region take one of three values
+ * resulting in no curved cells at all, curved cells at the boundary
+ * (default) or curved cells in the whole domain.
*
- * Even for non-curved cells the
- * mapping argument can be used
- * for the Eulerian mappings (see
- * class MappingQ1Eulerian) where
- * a mapping is used not only to
- * determine the position of
- * points interior to a cell, but
- * also of the vertices. It
- * offers an opportunity to watch
- * the solution on a deformed
- * triangulation on which the
- * computation was actually
- * carried out, even if the mesh
- * is internally stored in its
- * undeformed configuration and
- * the deformation is only
- * tracked by an additional
- * vector that holds the
+ * Even for non-curved cells the mapping argument can be used for the
+ * Eulerian mappings (see class MappingQ1Eulerian) where a mapping is used
+ * not only to determine the position of points interior to a cell, but also
+ * of the vertices. It offers an opportunity to watch the solution on a
+ * deformed triangulation on which the computation was actually carried out,
+ * even if the mesh is internally stored in its undeformed configuration and
+ * the deformation is only tracked by an additional vector that holds the
* deformation of each vertex.
*
- * @todo The @p mapping argument should be
- * replaced by a hp::MappingCollection in
- * case of a hp::DoFHandler.
+ * @todo The @p mapping argument should be replaced by a
+ * hp::MappingCollection in case of a hp::DoFHandler.
*/
virtual void build_patches (const Mapping<DH::dimension,DH::space_dimension> &mapping,
const unsigned int n_subdivisions = 0,
const CurvedCellRegion curved_region = curved_boundary);
/**
- * Return the first cell which we
- * want output for. The default
- * implementation returns the
- * first active cell, but you
- * might want to return other
- * cells in a derived class.
+ * Return the first cell which we want output for. The default
+ * implementation returns the first active cell, but you might want to
+ * return other cells in a derived class.
*/
virtual cell_iterator first_cell ();
/**
- * Return the next cell after
- * @p cell which we want output
- * for. If there are no more
- * cells, <tt>#dofs->end()</tt> shall
- * be returned.
+ * Return the next cell after @p cell which we want output for. If there
+ * are no more cells, <tt>#dofs->end()</tt> shall be returned.
*
- * The default implementation
- * returns the next active cell,
- * but you might want to return
- * other cells in a derived
- * class. Note that the default
- * implementation assumes that
- * the given @p cell is active,
- * which is guaranteed as long as
- * first_cell() is also used
- * from the default
- * implementation. Overloading
- * only one of the two functions
- * might not be a good idea.
+ * The default implementation returns the next active cell, but you might
+ * want to return other cells in a derived class. Note that the default
+ * implementation assumes that the given @p cell is active, which is
+ * guaranteed as long as first_cell() is also used from the default
+ * implementation. Overloading only one of the two functions might not be a
+ * good idea.
*/
virtual cell_iterator next_cell (const cell_iterator &cell);
private:
/**
- * Return the first cell produced
- * by the
- * first_cell()/next_cell()
- * function pair that is locally
- * owned. If this object operates
- * on a non-distributed
- * triangulation, the result
- * equals what first_cell()
- * returns.
+ * Return the first cell produced by the first_cell()/next_cell() function
+ * pair that is locally owned. If this object operates on a non-distributed
+ * triangulation, the result equals what first_cell() returns.
*/
cell_iterator first_locally_owned_cell ();
/**
- * Return the next cell produced
- * by the next_cell() function
- * that is locally owned. If this
- * object operates on a
- * non-distributed triangulation,
- * the result equals what
- * first_cell() returns.
+ * Return the next cell produced by the next_cell() function that is locally
+ * owned. If this object operates on a non-distributed triangulation, the
+ * result equals what first_cell() returns.
*/
cell_iterator next_locally_owned_cell (const cell_iterator &cell);
/**
- * Build one patch. This function
- * is called in a WorkStream
- * context.
+ * Build one patch. This function is called in a WorkStream context.
*
- * The result is written into the patch
- * variable.
+ * The result is written into the patch variable.
*/
void build_one_patch (const std::pair<cell_iterator, unsigned int> *cell_and_index,
internal::DataOut::ParallelData<DH::dimension, DH::space_dimension> &data,
// -------------------- template and inline functions ------------------------
-namespace internal
-{
- namespace DataOut
- {
- template <int dim, int spacedim>
- template <class FE>
- ParallelDataBase<dim,spacedim>::
- ParallelDataBase (const unsigned int n_components,
- const unsigned int n_datasets,
- const unsigned int n_subdivisions,
- const unsigned int n_q_points,
- const std::vector<unsigned int> &n_postprocessor_outputs,
- const FE &finite_elements)
- :
- n_components (n_components),
- n_datasets (n_datasets),
- n_subdivisions (n_subdivisions),
- patch_values (n_q_points),
- patch_values_system (n_q_points),
- patch_gradients (n_q_points),
- patch_gradients_system (n_q_points),
- patch_hessians (n_q_points),
- patch_hessians_system (n_q_points),
- postprocessed_values (n_postprocessor_outputs.size()),
- fe_collection (finite_elements)
- {
- for (unsigned int k=0; k<n_q_points; ++k)
- {
- patch_values_system[k].reinit(n_components);
- patch_gradients_system[k].resize(n_components);
- patch_hessians_system[k].resize(n_components);
- }
-
- for (unsigned int dataset=0; dataset<n_postprocessor_outputs.size(); ++dataset)
- if (n_postprocessor_outputs[dataset] != 0)
- postprocessed_values[dataset]
- .resize(n_q_points,
- dealii::Vector<double>(n_postprocessor_outputs[dataset]));
- }
- }
-}
-
-
template <class DH, int patch_dim, int patch_space_dim>
template <class DH2>
void
template <int dim, int spacedim>
struct ParallelData : public internal::DataOut::ParallelDataBase<dim,spacedim>
{
- template <class FE>
- ParallelData (const Quadrature<dim-1> &quadrature,
- const unsigned int n_components,
- const unsigned int n_datasets,
+ ParallelData (const unsigned int n_datasets,
const unsigned int n_subdivisions,
const std::vector<unsigned int> &n_postprocessor_outputs,
const Mapping<dim,spacedim> &mapping,
- const FE &finite_elements,
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
const UpdateFlags update_flags);
- const dealii::hp::QCollection<dim-1> q_collection;
- const dealii::hp::MappingCollection<dim,spacedim> mapping_collection;
- dealii::hp::FEFaceValues<dim> x_fe_values;
-
std::vector<Point<dim> > patch_normals;
std::vector<Point<spacedim> > patch_evaluation_points;
};
template <int dim, int spacedim>
struct ParallelData : public internal::DataOut::ParallelDataBase<dim,spacedim>
{
- template <class FE>
- ParallelData (const Quadrature<dim> &quadrature,
- const unsigned int n_components,
- const unsigned int n_datasets,
+ ParallelData (const unsigned int n_datasets,
const unsigned int n_subdivisions,
const unsigned int n_patches_per_circle,
const std::vector<unsigned int> &n_postprocessor_outputs,
- const FE &finite_elements,
+ const Mapping<dim,spacedim> &mapping,
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
const UpdateFlags update_flags);
const unsigned int n_patches_per_circle;
- const dealii::hp::QCollection<dim> q_collection;
- dealii::hp::FEValues<dim,spacedim> x_fe_values;
-
std::vector<Point<spacedim> > patch_evaluation_points;
};
}
#include <deal.II/hp/dof_handler.h>
#include <deal.II/grid/tria_iterator.h>
#include <deal.II/fe/fe.h>
+#include <deal.II/fe/fe_dgq.h>
#include <deal.II/fe/fe_values.h>
#include <deal.II/hp/fe_values.h>
#include <deal.II/fe/mapping_q1.h>
namespace DataOut
{
template <int dim, int spacedim>
- template <class FE>
+ ParallelDataBase<dim,spacedim>::
+ ParallelDataBase (const unsigned int n_datasets,
+ const unsigned int n_subdivisions,
+ const std::vector<unsigned int> &n_postprocessor_outputs,
+ const Mapping<dim,spacedim> &mapping,
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
+ const UpdateFlags update_flags,
+ const bool use_face_values)
+ :
+ n_datasets (n_datasets),
+ n_subdivisions (n_subdivisions),
+ postprocessed_values (n_postprocessor_outputs.size()),
+ mapping_collection (mapping),
+ finite_elements (finite_elements),
+ update_flags (update_flags)
+ {
+ unsigned int n_q_points = 0;
+ if (use_face_values == false)
+ {
+ dealii::hp::QCollection<dim>
+ quadrature(QIterated<dim>(QTrapez<1>(), n_subdivisions));
+ n_q_points = quadrature[0].size();
+ x_fe_values.resize(this->finite_elements.size());
+ for (unsigned int i=0; i<this->finite_elements.size(); ++i)
+ {
+ // check if there is a finite element that is equal to the
+ // present one, then we can re-use the FEValues object
+ for (unsigned int j=0; j<i; ++j)
+ if (this->finite_elements[i].get() ==
+ this->finite_elements[j].get())
+ {
+ x_fe_values[i] = x_fe_values[j];
+ break;
+ }
+ if (x_fe_values[i].get() == 0)
+ x_fe_values[i].reset(new dealii::hp::FEValues<dim,spacedim>
+ (this->mapping_collection,
+ *this->finite_elements[i],
+ quadrature,
+ this->update_flags));
+ }
+ }
+ else
+ {
+ dealii::hp::QCollection<dim-1>
+ quadrature(QIterated<dim-1>(QTrapez<1>(), n_subdivisions));
+ n_q_points = quadrature[0].size();
+ x_fe_face_values.resize(this->finite_elements.size());
+ for (unsigned int i=0; i<this->finite_elements.size(); ++i)
+ {
+ // check if there is a finite element that is equal to the
+ // present one, then we can re-use the FEValues object
+ for (unsigned int j=0; j<i; ++j)
+ if (this->finite_elements[i].get() ==
+ this->finite_elements[j].get())
+ {
+ x_fe_face_values[i] = x_fe_face_values[j];
+ break;
+ }
+ if (x_fe_face_values[i].get() == 0)
+ x_fe_face_values[i].reset(new dealii::hp::FEFaceValues<dim,spacedim>
+ (this->mapping_collection,
+ *this->finite_elements[i],
+ quadrature,
+ this->update_flags));
+ }
+ }
+
+ patch_values.resize (n_q_points);
+ patch_values_system.resize (n_q_points);
+ patch_gradients.resize (n_q_points);
+ patch_gradients_system.resize (n_q_points);
+ patch_hessians.resize (n_q_points);
+ patch_hessians_system.resize (n_q_points);
+
+ for (unsigned int dataset=0; dataset<n_postprocessor_outputs.size(); ++dataset)
+ if (n_postprocessor_outputs[dataset] != 0)
+ postprocessed_values[dataset]
+ .resize(n_q_points,
+ dealii::Vector<double>(n_postprocessor_outputs[dataset]));
+ }
+
+
+
+
+
+ // implement copy constructor to create a thread's own version of
+ // x_fe_values
+ template <int dim, int spacedim>
+ ParallelDataBase<dim,spacedim>::
+ ParallelDataBase (const ParallelDataBase<dim,spacedim> &data)
+ :
+ n_datasets (data.n_datasets),
+ n_subdivisions (data.n_subdivisions),
+ patch_values (data.patch_values),
+ patch_values_system (data.patch_values_system),
+ patch_gradients (data.patch_gradients),
+ patch_gradients_system (data.patch_gradients_system),
+ patch_hessians (data.patch_hessians),
+ patch_hessians_system (data.patch_hessians_system),
+ postprocessed_values (data.postprocessed_values),
+ mapping_collection (data.mapping_collection),
+ finite_elements (data.finite_elements),
+ update_flags (data.update_flags)
+ {
+ if (data.x_fe_values.empty() == false)
+ {
+ Assert(data.x_fe_face_values.empty() == true, ExcInternalError());
+ dealii::hp::QCollection<dim>
+ quadrature(QIterated<dim>(QTrapez<1>(), n_subdivisions));
+ x_fe_values.resize(this->finite_elements.size());
+ for (unsigned int i=0; i<this->finite_elements.size(); ++i)
+ {
+ // check if there is a finite element that is equal to the
+ // present one, then we can re-use the FEValues object
+ for (unsigned int j=0; j<i; ++j)
+ if (this->finite_elements[i].get() ==
+ this->finite_elements[j].get())
+ {
+ x_fe_values[i] = x_fe_values[j];
+ break;
+ }
+ if (x_fe_values[i].get() == 0)
+ x_fe_values[i].reset(new dealii::hp::FEValues<dim,spacedim>
+ (this->mapping_collection,
+ *this->finite_elements[i],
+ quadrature,
+ this->update_flags));
+ }
+ }
+ else
+ {
+ dealii::hp::QCollection<dim-1>
+ quadrature(QIterated<dim-1>(QTrapez<1>(), n_subdivisions));
+ x_fe_face_values.resize(this->finite_elements.size());
+ for (unsigned int i=0; i<this->finite_elements.size(); ++i)
+ {
+ // check if there is a finite element that is equal to the
+ // present one, then we can re-use the FEValues object
+ for (unsigned int j=0; j<i; ++j)
+ if (this->finite_elements[i].get() ==
+ this->finite_elements[j].get())
+ {
+ x_fe_face_values[i] = x_fe_face_values[j];
+ break;
+ }
+ if (x_fe_face_values[i].get() == 0)
+ x_fe_face_values[i].reset(new dealii::hp::FEFaceValues<dim,spacedim>
+ (this->mapping_collection,
+ *this->finite_elements[i],
+ quadrature,
+ this->update_flags));
+ }
+ }
+ }
+
+
+
+ template <int dim, int spacedim>
+ template <typename DH>
+ void
+ ParallelDataBase<dim,spacedim>::
+ reinit_all_fe_values(std::vector<std_cxx1x::shared_ptr<DataEntryBase<DH> > > &dof_data,
+ const typename dealii::Triangulation<dim,spacedim>::cell_iterator &cell,
+ const unsigned int face)
+ {
+ for (unsigned int dataset=0; dataset<dof_data.size(); ++dataset)
+ {
+ bool duplicate = false;
+ for (unsigned int j=0; j<dataset; ++j)
+ if (finite_elements[dataset].get() == finite_elements[j].get())
+ duplicate = true;
+ if (duplicate == false)
+ {
+ typename DH::active_cell_iterator dh_cell(&cell->get_triangulation(),
+ cell->level(),
+ cell->index(),
+ dof_data[dataset]->dof_handler);
+ if (x_fe_values.empty())
+ {
+ AssertIndexRange(face,
+ GeometryInfo<dim>::faces_per_cell);
+ x_fe_face_values[dataset]->reinit(dh_cell, face);
+ }
+ else
+ x_fe_values[dataset]->reinit (dh_cell);
+ }
+ }
+ if (dof_data.empty())
+ {
+ if (x_fe_values.empty())
+ {
+ AssertIndexRange(face,
+ GeometryInfo<dim>::faces_per_cell);
+ x_fe_face_values[0]->reinit(cell, face);
+ }
+ else
+ x_fe_values[0]->reinit (cell);
+ }
+ }
+
+
+
+ template <int dim, int spacedim>
+ const FEValuesBase<dim,spacedim> &
+ ParallelDataBase<dim,spacedim>::
+ get_present_fe_values(const unsigned int dataset) const
+ {
+ AssertIndexRange(dataset, finite_elements.size());
+ if (x_fe_values.empty())
+ return x_fe_face_values[dataset]->get_present_fe_values();
+ else
+ return x_fe_values[dataset]->get_present_fe_values();
+ }
+
+
+
+ template <int dim, int spacedim>
+ void
+ ParallelDataBase<dim,spacedim>::
+ resize_system_vectors(const unsigned int n_components)
+ {
+ Assert(patch_values_system.size() > 0, ExcInternalError());
+ AssertDimension(patch_values_system.size(),
+ patch_gradients_system.size());
+ AssertDimension(patch_values_system.size(),
+ patch_hessians_system.size());
+ if (patch_values_system[0].size() == n_components)
+ return;
+ for (unsigned int k=0; k<patch_values_system.size(); ++k)
+ {
+ patch_values_system[k].reinit(n_components);
+ patch_gradients_system[k].resize(n_components);
+ patch_hessians_system[k].resize(n_components);
+ }
+ }
+
+
+
+
+ template <int dim, int spacedim>
ParallelData<dim,spacedim>::
- ParallelData (const Quadrature<dim> &quadrature,
- const unsigned int n_components,
- const unsigned int n_datasets,
+ ParallelData (const unsigned int n_datasets,
const unsigned int n_subdivisions,
const std::vector<unsigned int> &n_postprocessor_outputs,
const Mapping<dim,spacedim> &mapping,
- const std::vector<std::vector<unsigned int> > &cell_to_patch_index_map,
- const FE &finite_elements,
- const UpdateFlags update_flags)
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
+ const UpdateFlags update_flags,
+ const std::vector<std::vector<unsigned int> > &cell_to_patch_index_map)
:
- ParallelDataBase<dim,spacedim> (n_components,
- n_datasets,
+ ParallelDataBase<dim,spacedim> (n_datasets,
n_subdivisions,
- quadrature.size(),
n_postprocessor_outputs,
- finite_elements),
- q_collection (quadrature),
- mapping_collection (mapping),
- x_fe_values (this->mapping_collection,
- this->fe_collection,
- q_collection,
- update_flags),
+ mapping,
+ finite_elements,
+ update_flags,
+ false),
cell_to_patch_index_map (&cell_to_patch_index_map)
{}
/**
- * In a WorkStream context, use
- * this function to append the
- * patch computed by the parallel
- * stage to the array of patches.
+ * In a WorkStream context, use this function to append the patch computed
+ * by the parallel stage to the array of patches.
*/
template <int dim, int spacedim>
void
namespace DataOut
{
template <class DH>
- DataEntryBase<DH>::DataEntryBase (const std::vector<std::string> &names_in,
+ DataEntryBase<DH>::DataEntryBase (const DH *dofs,
+ const std::vector<std::string> &names_in,
const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation)
:
+ dof_handler (dofs, typeid(dealii::DataOut_DoFData<DH,DH::dimension,DH::space_dimension>).name()),
names(names_in),
data_component_interpretation (data_component_interpretation),
postprocessor(0, typeid(*this).name()),
ExcDimensionMismatch(data_component_interpretation.size(),
names.size()));
- // check that the names use only allowed
- // characters
- // check names for invalid characters
+ // check that the names use only allowed characters
for (unsigned int i=0; i<names.size(); ++i)
Assert (names[i].find_first_not_of("abcdefghijklmnopqrstuvwxyz"
"ABCDEFGHIJKLMNOPQRSTUVWXYZ"
template <class DH>
- DataEntryBase<DH>::DataEntryBase (const DataPostprocessor<DH::space_dimension> *data_postprocessor)
+ DataEntryBase<DH>::DataEntryBase (const DH *dofs,
+ const DataPostprocessor<DH::space_dimension> *data_postprocessor)
:
+ dof_handler (dofs, typeid(dealii::DataOut_DoFData<DH,DH::dimension,DH::space_dimension>).name()),
names(data_postprocessor->get_names()),
data_component_interpretation (data_postprocessor->get_data_component_interpretation()),
postprocessor(data_postprocessor, typeid(*this).name()),
ExcDimensionMismatch (data_postprocessor->get_names().size(),
data_postprocessor->get_data_component_interpretation().size()));
- // check that the names use only allowed
- // characters
+ // check that the names use only allowed characters
for (unsigned int i=0; i<names.size(); ++i)
Assert (names[i].find_first_not_of("abcdefghijklmnopqrstuvwxyz"
"ABCDEFGHIJKLMNOPQRSTUVWXYZ"
/**
- * Class that stores a pointer to a
- * vector of type equal to the template
- * argument, and provides the functions
- * to extract data from it.
+ * Class that stores a pointer to a vector of type equal to the template
+ * argument, and provides the functions to extract data from it.
*
* @author Wolfgang Bangerth, 2004
*/
{
public:
/**
- * Constructor. Give a list of names
- * for the individual components of
- * the vector and their
- * interpretation as scalar or vector
- * data. This constructor assumes
- * that no postprocessor is going to
- * be used.
+ * Constructor. Give a list of names for the individual components of
+ * the vector and their interpretation as scalar or vector data. This
+ * constructor assumes that no postprocessor is going to be used.
*/
- DataEntry (const VectorType *data,
+ DataEntry (const DH *dofs,
+ const VectorType *data,
const std::vector<std::string> &names,
const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation);
/**
- * Constructor when a data
- * postprocessor is going to be
- * used. In that case, the names and
- * vector declarations are going to
- * be acquired from the postprocessor.
+ * Constructor when a data postprocessor is going to be used. In that
+ * case, the names and vector declarations are going to be acquired from
+ * the postprocessor.
*/
- DataEntry (const VectorType *data,
+ DataEntry (const DH *dofs,
+ const VectorType *data,
const DataPostprocessor<DH::space_dimension> *data_postprocessor);
/**
- * Assuming that the stored vector is
- * a cell vector, extract the given
+ * Assuming that the stored vector is a cell vector, extract the given
* element from it.
*/
virtual
get_cell_data_value (const unsigned int cell_number) const;
/**
- * Given a FEValuesBase object,
- * extract the values on the present
- * cell from the vector we actually
- * store.
+ * Given a FEValuesBase object, extract the values on the present cell
+ * from the vector we actually store.
*/
virtual
void
std::vector<double> &patch_values) const;
/**
- * Given a FEValuesBase object,
- * extract the values on the present
- * cell from the vector we actually
- * store. This function does the same
- * as the one above but for
- * vector-valued finite elements.
+ * Given a FEValuesBase object, extract the values on the present cell
+ * from the vector we actually store. This function does the same as the
+ * one above but for vector-valued finite elements.
*/
virtual
void
std::vector<dealii::Vector<double> > &patch_values_system) const;
/**
- * Given a FEValuesBase object,
- * extract the gradients on the present
- * cell from the vector we actually
- * store.
+ * Given a FEValuesBase object, extract the gradients on the present
+ * cell from the vector we actually store.
*/
virtual
void
std::vector<Tensor<1,DH::space_dimension> > &patch_gradients) const;
/**
- * Given a FEValuesBase object,
- * extract the gradients on the present
- * cell from the vector we actually
- * store. This function does the same
- * as the one above but for
- * vector-valued finite elements.
+ * Given a FEValuesBase object, extract the gradients on the present
+ * cell from the vector we actually store. This function does the same
+ * as the one above but for vector-valued finite elements.
*/
virtual
void
std::vector<std::vector<Tensor<1,DH::space_dimension> > > &patch_gradients_system) const;
/**
- * Given a FEValuesBase object, extract
- * the second derivatives on the
- * present cell from the vector we
- * actually store.
+ * Given a FEValuesBase object, extract the second derivatives on the
+ * present cell from the vector we actually store.
*/
virtual
void
std::vector<Tensor<2,DH::space_dimension> > &patch_hessians) const;
/**
- * Given a FEValuesBase object, extract
- * the second derivatives on the
- * present cell from the vector we
- * actually store. This function does
- * the same as the one above but for
- * vector-valued finite elements.
+ * Given a FEValuesBase object, extract the second derivatives on the
+ * present cell from the vector we actually store. This function does
+ * the same as the one above but for vector-valued finite elements.
*/
virtual
void
std::vector<std::vector< Tensor<2,DH::space_dimension> > > &patch_hessians_system) const;
/**
- * Clear all references to the
- * vectors.
+ * Clear all references to the vectors.
*/
virtual void clear ();
/**
- * Determine an estimate for
- * the memory consumption (in
- * bytes) of this object.
+ * Determine an estimate for the memory consumption (in bytes) of this
+ * object.
*/
virtual std::size_t memory_consumption () const;
private:
/**
- * Pointer to the data
- * vector. Note that
- * ownership of the vector
- * pointed to remains with
- * the caller of this class.
+ * Pointer to the data vector. Note that ownership of the vector pointed
+ * to remains with the caller of this class.
*/
const VectorType *vector;
};
template <class DH, class VectorType>
DataEntry<DH,VectorType>::
- DataEntry (const VectorType *data,
+ DataEntry (const DH *dofs,
+ const VectorType *data,
const std::vector<std::string> &names,
const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation)
:
- DataEntryBase<DH> (names, data_component_interpretation),
+ DataEntryBase<DH> (dofs, names, data_component_interpretation),
vector (data)
{}
template <class DH, class VectorType>
DataEntry<DH,VectorType>::
- DataEntry (const VectorType *data,
+ DataEntry (const DH *dofs,
+ const VectorType *data,
const DataPostprocessor<DH::space_dimension> *data_postprocessor)
:
- DataEntryBase<DH> (data_postprocessor),
+ DataEntryBase<DH> (dofs, data_postprocessor),
vector (data)
{}
DataEntry<DH,VectorType>::clear ()
{
vector = 0;
+ this->dof_handler = 0;
}
}
}
int patch_dim, int patch_space_dim>
DataOut_DoFData<DH,patch_dim,patch_space_dim>::DataOut_DoFData ()
:
+ triangulation(0,typeid(*this).name()),
dofs(0,typeid(*this).name())
{}
Assert (dof_data.size() == 0, ExcOldDataStillPresent());
Assert (cell_data.size() == 0, ExcOldDataStillPresent());
- dofs = &d;
+ triangulation = SmartPointer<const Triangulation<DH::dimension,DH::space_dimension> >(&d.get_tria(), typeid(*this).name());
+ dofs = SmartPointer<const DH>(&d, typeid(*this).name());
+}
+
+
+
+template <class DH, int patch_dim, int patch_space_dim>
+void
+DataOut_DoFData<DH,patch_dim,patch_space_dim>::
+attach_triangulation (const Triangulation<DH::dimension,DH::space_dimension> &tria)
+{
+ Assert (dof_data.size() == 0, ExcOldDataStillPresent());
+ Assert (cell_data.size() == 0, ExcOldDataStillPresent());
+
+ triangulation = SmartPointer<const Triangulation<DH::dimension,DH::space_dimension> >(&tria, typeid(*this).name());
}
const DataVectorType type,
const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation)
{
- Assert (dofs != 0, ExcNoDoFHandlerSelected ());
- const unsigned int n_components = dofs->get_fe().n_components ();
+ Assert (triangulation != 0, ExcNoTriangulationSelected ());
+ const unsigned int n_components =
+ dofs != 0 ? dofs->get_fe().n_components () : 1;
std::vector<std::string> names;
- // if only one component or vector
- // is cell vector: we only need one
- // name
+ // if only one component or vector is cell vector: we only need one name
if ((n_components == 1) ||
- (vec.size() == dofs->get_tria().n_active_cells()))
+ (vec.size() == triangulation->n_active_cells()))
{
names.resize (1, name);
}
else
- // otherwise append _i to the
- // given name
+ // otherwise append _i to the given name
{
names.resize (n_components);
for (unsigned int i=0; i<n_components; ++i)
const DataVectorType type,
const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation_)
{
- Assert (dofs != 0, ExcNoDoFHandlerSelected ());
+ Assert (triangulation != 0, ExcNoTriangulationSelected ());
const std::vector<DataComponentInterpretation::DataComponentInterpretation> &
data_component_interpretation
DataVectorType actual_type = type;
if (type == type_automatic)
{
- if (vec.size() == dofs->get_tria().n_active_cells())
+ if (vec.size() == triangulation->n_active_cells())
actual_type = type_cell_data;
else
actual_type = type_dof_data;
switch (actual_type)
{
case type_cell_data:
- Assert (vec.size() == dofs->get_tria().n_active_cells(),
- ExcInvalidVectorSize (vec.size(),
- dofs->n_dofs(),
- dofs->get_tria().n_active_cells()));
+ Assert (vec.size() == triangulation->n_active_cells(),
+ ExcDimensionMismatch (vec.size(),
+ triangulation->n_active_cells()));
Assert (names.size() == 1,
ExcInvalidNumberOfNames (names.size(), 1));
break;
case type_dof_data:
+ Assert (dofs != 0, ExcNoDoFHandlerSelected ());
Assert (vec.size() == dofs->n_dofs(),
ExcInvalidVectorSize (vec.size(),
dofs->n_dofs(),
- dofs->get_tria().n_active_cells()));
+ triangulation->n_active_cells()));
Assert (names.size() == dofs->get_fe().n_components(),
ExcInvalidNumberOfNames (names.size(), dofs->get_fe().n_components()));
break;
case type_automatic:
- // this case should have
- // been handled above...
+ // this case should have been handled above...
Assert (false, ExcInternalError());
}
internal::DataOut::DataEntryBase<DH> *new_entry
- = new internal::DataOut::DataEntry<DH,VECTOR>(&vec, names,
+ = new internal::DataOut::DataEntry<DH,VECTOR>(dofs, &vec, names,
data_component_interpretation);
if (actual_type == type_dof_data)
dof_data.push_back (std_cxx1x::shared_ptr<internal::DataOut::DataEntryBase<DH> >(new_entry));
add_data_vector (const VECTOR &vec,
const DataPostprocessor<DH::space_dimension> &data_postprocessor)
{
- // this is a specialized version of the
- // other function where we have a
- // postprocessor. if we do, we know that we
- // have type_dof_data, which makes things a
- // bit simpler, we also don't need to deal
- // with some of the other stuff and use a
- // different constructor of DataEntry
+ // this is a specialized version of the other function where we have a
+ // postprocessor. if we do, we know that we have type_dof_data, which makes
+ // things a bit simpler, we also don't need to deal with some of the other
+ // stuff and use a different constructor of DataEntry
Assert (dofs != 0, ExcNoDoFHandlerSelected ());
dofs->get_tria().n_active_cells()));
internal::DataOut::DataEntryBase<DH> *new_entry
- = new internal::DataOut::DataEntry<DH,VECTOR>(&vec, &data_postprocessor);
+ = new internal::DataOut::DataEntry<DH,VECTOR>(dofs, &vec, &data_postprocessor);
+ dof_data.push_back (std_cxx1x::shared_ptr<internal::DataOut::DataEntryBase<DH> >(new_entry));
+}
+
+
+
+template <class DH,
+ int patch_dim, int patch_space_dim>
+template <class VECTOR>
+void
+DataOut_DoFData<DH,patch_dim,patch_space_dim>::
+add_data_vector (const DH &dof_handler,
+ const VECTOR &vec,
+ const DataPostprocessor<DH::space_dimension> &data_postprocessor)
+{
+ // this is a specialized version of the other function where we have a
+ // postprocessor. if we do, we know that we have type_dof_data, which makes
+ // things a bit simpler, we also don't need to deal with some of the other
+ // stuff and use a different constructor of DataEntry
+
+ AssertDimension (vec.size(), dof_handler.n_dofs());
+
+ internal::DataOut::DataEntryBase<DH> *new_entry
+ = new internal::DataOut::DataEntry<DH,VECTOR>(&dof_handler, &vec, &data_postprocessor);
+ dof_data.push_back (std_cxx1x::shared_ptr<internal::DataOut::DataEntryBase<DH> >(new_entry));
+}
+
+
+
+template <class DH,
+ int patch_dim, int patch_space_dim>
+template <class VECTOR>
+void
+DataOut_DoFData<DH,patch_dim,patch_space_dim>::
+add_data_vector (const DH &dof_handler,
+ const VECTOR &data,
+ const std::string &name,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation)
+{
+ const unsigned int n_components = dof_handler.get_fe().n_components ();
+
+ std::vector<std::string> names;
+ // if only one component: we only need one name
+ if (n_components == 1)
+ names.resize (1, name);
+ else
+ // otherwise append _i to the given name
+ {
+ names.resize (n_components);
+ for (unsigned int i=0; i<n_components; ++i)
+ {
+ std::ostringstream namebuf;
+ namebuf << '_' << i;
+ names[i] = name + namebuf.str();
+ }
+ }
+
+ add_data_vector (dof_handler, data, names, data_component_interpretation);
+}
+
+
+
+template <class DH,
+ int patch_dim, int patch_space_dim>
+template <class VECTOR>
+void
+DataOut_DoFData<DH,patch_dim,patch_space_dim>::
+add_data_vector (const DH &dof_handler,
+ const VECTOR &data,
+ const std::vector<std::string> &names,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &data_component_interpretation_)
+{
+ // this is an extended version of the other functions where we pass a vector
+ // together with its DoFHandler. if we do, we know that we have
+ // type_dof_data, which makes things a bit simpler
+ if (triangulation == 0)
+ triangulation = SmartPointer<const Triangulation<DH::dimension,DH::space_dimension> >(&dof_handler.get_tria(), typeid(*this).name());
+
+ Assert (&dof_handler.get_tria() == triangulation,
+ ExcMessage("The triangulation attached to the DoFHandler does not "
+ "match with the one set previously"));
+
+ Assert (data.size() == dof_handler.n_dofs(),
+ ExcDimensionMismatch (data.size(), dof_handler.n_dofs()));
+
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &
+ data_component_interpretation
+ = (data_component_interpretation_.size() != 0
+ ?
+ data_component_interpretation_
+ :
+ std::vector<DataComponentInterpretation::DataComponentInterpretation>
+ (names.size(), DataComponentInterpretation::component_is_scalar));
+
+ internal::DataOut::DataEntryBase<DH> *new_entry
+ = new internal::DataOut::DataEntry<DH,VECTOR>(&dof_handler, &data, names,
+ data_component_interpretation);
dof_data.push_back (std_cxx1x::shared_ptr<internal::DataOut::DataEntryBase<DH> >(new_entry));
}
+template <class DH,
+ int patch_dim, int patch_space_dim>
+std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<DH::dimension,DH::space_dimension> > >
+DataOut_DoFData<DH,patch_dim,patch_space_dim>::get_finite_elements() const
+{
+ const unsigned int dhdim = DH::dimension;
+ const unsigned int dhspacedim = DH::space_dimension;
+ std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dhdim,dhspacedim> > >
+ finite_elements(this->dof_data.size());
+ for (unsigned int i=0; i<this->dof_data.size(); ++i)
+ {
+ Assert (dof_data[i]->dof_handler != 0, ExcNoDoFHandlerSelected ());
+
+ // avoid creating too many finite elements and doing a lot of work on
+ // initializing FEValues downstream: if two DoFHandlers are the same
+ // (checked by pointer comparison), we can re-use the shared_ptr object
+ // for the second one. We cannot check for finite element equalities
+ // because we need different FEValues objects for different dof
+ // handlers.
+ bool duplicate = false;
+ for (unsigned int j=0; j<i; ++j)
+ if (dof_data[i]->dof_handler == dof_data[j]->dof_handler)
+ {
+ finite_elements[i] = finite_elements[j];
+ duplicate = true;
+ }
+ if (duplicate == false)
+ finite_elements[i].reset(new dealii::hp::FECollection<dhdim,dhspacedim>
+ (this->dof_data[i]->dof_handler->get_fe()));
+ }
+ if (this->dof_data.empty())
+ {
+ finite_elements.resize(1);
+ finite_elements[0].reset(new dealii::hp::FECollection<dhdim,dhspacedim>
+ (FE_DGQ<dhdim,dhspacedim>(0)));
+ }
+ return finite_elements;
+}
+
+
+
template <class DH,
int patch_dim, int patch_space_dim>
std::size_t
DataOutBase::Patch<DH::dimension, DH::space_dimension> &patch,
const CurvedCellRegion curved_cell_region)
{
- // use ucd_to_deal map as patch vertices
- // are in the old, unnatural ordering. if
- // the mapping does not preserve locations
- // (e.g. MappingQEulerian), we need to
- // compute the offset of the vertex for the
- // graphical output. Otherwise, we can just
- // use the vertex info.
+ // use ucd_to_deal map as patch vertices are in the old, unnatural
+ // ordering. if the mapping does not preserve locations
+ // (e.g. MappingQEulerian), we need to compute the offset of the vertex for
+ // the graphical output. Otherwise, we can just use the vertex info.
for (unsigned int vertex=0; vertex<GeometryInfo<DH::dimension>::vertices_per_cell; ++vertex)
if (data.mapping_collection[0].preserves_vertex_locations())
patch.vertices[vertex] = cell_and_index->first->vertex(vertex);
if (data.n_datasets > 0)
{
- data.x_fe_values.reinit (cell_and_index->first);
- const FEValues<DH::dimension,DH::space_dimension> &fe_patch_values
- = data.x_fe_values.get_present_fe_values ();
+ // create DH::active_cell_iterator and initialize FEValues
+ data.reinit_all_fe_values(this->dof_data, cell_and_index->first);
+
+ const FEValuesBase<DH::dimension,DH::space_dimension> &fe_patch_values
+ = data.get_present_fe_values (0);
const unsigned int n_q_points = fe_patch_values.n_quadrature_points;
- // depending on the requested output
- // of curved cells, if necessary
- // append the quadrature points to
- // the last rows of the patch.data
- // member. This is the case if we
- // want to produce curved cells at
- // the boundary and this cell
- // actually is at the boundary, or
- // else if we want to produce curved
- // cells everywhere
+ // depending on the requested output of curved cells, if necessary
+ // append the quadrature points to the last rows of the patch.data
+ // member. This is the case if we want to produce curved cells at the
+ // boundary and this cell actually is at the boundary, or else if we
+ // want to produce curved cells everywhere
//
- // note: a cell is *always* at
- // the boundary if dim<spacedim
+ // note: a cell is *always* at the boundary if dim<spacedim
if (curved_cell_region==curved_inner_cells
||
(curved_cell_region==curved_boundary
{
Assert(patch.space_dim==DH::space_dimension, ExcInternalError());
const std::vector<Point<DH::space_dimension> > &q_points=fe_patch_values.get_quadrature_points();
- // resize the patch.data member
- // in order to have enough memory
- // for the quadrature points as
- // well
+ // resize the patch.data member in order to have enough memory for
+ // the quadrature points as well
patch.data.reinit (data.n_datasets+DH::space_dimension, n_q_points);
- // set the flag indicating that
- // for this cell the points are
+ // set the flag indicating that for this cell the points are
// explicitly given
patch.points_are_available=true;
// copy points to patch.data
// first fill dof_data
for (unsigned int dataset=0; dataset<this->dof_data.size(); ++dataset)
{
+ const FEValuesBase<DH::dimension,DH::space_dimension> &fe_patch_values
+ = data.get_present_fe_values (dataset);
+ const unsigned int n_components =
+ fe_patch_values.get_fe().n_components();
+
const DataPostprocessor<DH::space_dimension> *postprocessor=this->dof_data[dataset]->postprocessor;
if (postprocessor != 0)
{
- // we have to postprocess the
- // data, so determine, which
- // fields have to be updated
+ // we have to postprocess the data, so determine, which fields
+ // have to be updated
const UpdateFlags update_flags=postprocessor->get_needed_update_flags();
- if (data.n_components == 1)
+ if (n_components == 1)
{
- // at each point there is
- // only one component of
- // value, gradient etc.
+ // at each point there is only one component of value,
+ // gradient etc.
if (update_flags & update_values)
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values);
}
else
{
- // at each point there is
- // a vector valued
- // function and its
+ data.resize_system_vectors (n_components);
+
+ // at each point there is a vector valued function and its
// derivative...
if (update_flags & update_values)
this->dof_data[dataset]->get_function_values (fe_patch_values,
= data.postprocessed_values[dataset][q](component);
}
else
- // now we use the given data
- // vector without
- // modifications. again, we
- // treat single component
- // functions separately for
- // efficiency reasons.
- if (data.n_components == 1)
+ // now we use the given data vector without modifications. again,
+ // we treat single component functions separately for efficiency
+ // reasons.
+ if (n_components == 1)
{
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values);
}
else
{
+ data.resize_system_vectors(n_components);
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values_system);
- for (unsigned int component=0; component<data.n_components;
+ for (unsigned int component=0; component<n_components;
++component)
for (unsigned int q=0; q<n_q_points; ++q)
patch.data(offset+component,q) =
data.patch_values_system[q](component);
}
- // increment the counter for the
- // actual data record
+ // increment the counter for the actual data record
offset+=this->dof_data[dataset]->n_output_variables;
}
- // then do the cell data. only
- // compute the number of a cell if
- // needed; also make sure that we
- // only access cell data if the
- // first_cell/next_cell functions
- // only return active cells
+ // then do the cell data. only compute the number of a cell if needed;
+ // also make sure that we only access cell data if the
+ // first_cell/next_cell functions only return active cells
if (this->cell_data.size() != 0)
{
Assert (!cell_and_index->first->has_children(), ExcNotImplemented());
for (unsigned int f=0; f<GeometryInfo<DH::dimension>::faces_per_cell; ++f)
{
- // let's look up whether
- // the neighbor behind that
- // face is noted in the
- // table of cells which we
- // treat. this can only
- // happen if the neighbor
- // exists, and is on the
- // same level as this cell,
- // but it may also happen
- // that the neighbor is not
- // a member of the range of
- // cells over which we
- // loop, in which case the
- // respective entry in the
- // cell_to_patch_index_map
- // will have the value
- // no_neighbor. (note that
- // since we allocated only
- // as much space in this
- // array as the maximum
- // index of the cells we
- // loop over, not every
- // neighbor may have its
- // space in it, so we have
- // to assume that it is
- // extended by values
+ // let's look up whether the neighbor behind that face is noted in the
+ // table of cells which we treat. this can only happen if the neighbor
+ // exists, and is on the same level as this cell, but it may also happen
+ // that the neighbor is not a member of the range of cells over which we
+ // loop, in which case the respective entry in the
+ // cell_to_patch_index_map will have the value no_neighbor. (note that
+ // since we allocated only as much space in this array as the maximum
+ // index of the cells we loop over, not every neighbor may have its
+ // space in it, so we have to assume that it is extended by values
// no_neighbor)
if (cell_and_index->first->at_boundary(f)
||
continue;
}
- // now, there is a
- // neighbor, so get its
- // patch number and set it
- // for the neighbor index
+ // now, there is a neighbor, so get its patch number and set it for the
+ // neighbor index
patch.neighbors[f]
= (*data.cell_to_patch_index_map)[neighbor->level()][neighbor->index()];
}
}
+
template <int dim, class DH>
void DataOut<dim,DH>::build_patches (const Mapping<DH::dimension,DH::space_dimension> &mapping,
const unsigned int nnnn_subdivisions,
const CurvedCellRegion curved_region)
{
- // Check consistency of redundant
- // template parameter
+ // Check consistency of redundant template parameter
Assert (dim==DH::dimension, ExcDimensionMismatch(dim, DH::dimension));
typedef DataOut_DoFData<DH, DH::dimension, DH::space_dimension> BaseClass;
- Assert (this->dofs != 0, typename BaseClass::ExcNoDoFHandlerSelected());
+ Assert (this->triangulation != 0,
+ typename BaseClass::ExcNoTriangulationSelected());
const unsigned int n_subdivisions = (nnnn_subdivisions != 0)
? nnnn_subdivisions
Assert (n_subdivisions >= 1,
ExcInvalidNumberOfSubdivisions(n_subdivisions));
- // first count the cells we want to
- // create patches of. also fill the
- // object that maps the cell
- // indices to the patch numbers, as
- // this will be needed for
- // generation of neighborship
- // information
+ // first count the cells we want to create patches of. also fill the object
+ // that maps the cell indices to the patch numbers, as this will be needed
+ // for generation of neighborship information
std::vector<std::vector<unsigned int> > cell_to_patch_index_map;
- cell_to_patch_index_map.resize (this->dofs->get_tria().n_levels());
- for (unsigned int l=0; l<this->dofs->get_tria().n_levels(); ++l)
+ cell_to_patch_index_map.resize (this->triangulation->n_levels());
+ for (unsigned int l=0; l<this->triangulation->n_levels(); ++l)
{
unsigned int max_index = 0;
- for (cell_iterator cell=first_locally_owned_cell(); cell != this->dofs->end();
+ for (cell_iterator cell=first_locally_owned_cell(); cell != this->triangulation->end();
cell = next_locally_owned_cell(cell))
if (static_cast<unsigned int>(cell->level()) == l)
max_index = std::max (max_index,
std::vector<std::pair<cell_iterator, unsigned int> > all_cells;
{
- // set the index of the first
- // cell. if
- // first_locally_owned_cell /
- // next_locally_owned_cell
- // returns non-active cells, then
- // the index is not usable
- // anyway, but otherwise we
- // should keep track where we are
+ // set the index of the first cell. if first_locally_owned_cell /
+ // next_locally_owned_cell returns non-active cells, then the index is not
+ // usable anyway, but otherwise we should keep track where we are
unsigned int index;
- if ((first_locally_owned_cell() == this->dofs->end())
+ cell_iterator cell = first_locally_owned_cell();
+ if ((cell == this->triangulation->end())
||
- (first_locally_owned_cell()->has_children()))
+ (cell->has_children()))
index = 0;
else
- index = std::distance (this->dofs->begin_active(),
- active_cell_iterator(first_locally_owned_cell()));
- for (cell_iterator cell=first_locally_owned_cell(); cell != this->dofs->end();
- cell = next_locally_owned_cell(cell))
+ index = std::distance (this->triangulation->begin_active(),
+ active_cell_iterator(cell));
+ for ( ; cell != this->triangulation->end(); )
{
Assert (static_cast<unsigned int>(cell->level()) <
cell_to_patch_index_map.size(),
all_cells.push_back (std::make_pair(cell, index));
- // if both this and the next
- // cell are active, then
- // increment the index that
- // keeps track on which
- // active cell we are sitting
- // correctly. if one of the
- // cells is not active, then
- // this index doesn't mean
- // anything anyway, so just
- // ignore it. same if we are
- // at the end of the range
+ // if both this and the next cell are active, then increment the index
+ // that keeps track on which active cell we are sitting correctly. if
+ // one of the cells is not active, then this index doesn't mean
+ // anything anyway, so just ignore it. same if we are at the end of
+ // the range
+ cell_iterator next = next_locally_owned_cell(cell);
if (!cell->has_children() &&
- next_locally_owned_cell(cell) != this->dofs->end() &&
- !next_locally_owned_cell(cell)->has_children())
+ next != this->triangulation->end() &&
+ !next->has_children())
index += std::distance (active_cell_iterator(cell),
- active_cell_iterator(next_locally_owned_cell(cell)));
+ active_cell_iterator(next));
+ cell = next;
}
}
this->patches.reserve (all_cells.size());
Assert (this->patches.size() == 0, ExcInternalError());
- // now create a default patch and a
- // default object for the
- // WorkStream object to work with
- const QTrapez<1> q_trapez;
- const QIterated<DH::dimension> patch_points (q_trapez, n_subdivisions);
-
- const unsigned int n_components = this->dofs->get_fe().n_components();
+ // now create a default object for the WorkStream object to work with
unsigned int n_datasets=this->cell_data.size();
for (unsigned int i=0; i<this->dof_data.size(); ++i)
n_datasets += this->dof_data[i]->n_output_variables;
for (unsigned int i=0; i<this->dof_data.size(); ++i)
if (this->dof_data[i]->postprocessor)
update_flags |= this->dof_data[i]->postprocessor->get_needed_update_flags();
- // perhaps update_normal_vectors is present,
- // which would only be useful on faces, but
- // we may not use it here.
+ // perhaps update_normal_vectors is present, which would only be useful on
+ // faces, but we may not use it here.
Assert (!(update_flags & update_normal_vectors),
ExcMessage("The update of normal vectors may not be requested for evaluation of "
"data on cells via DataPostprocessor."));
internal::DataOut::ParallelData<DH::dimension, DH::space_dimension>
- thread_data (patch_points,
- n_components, n_datasets, n_subdivisions,
+ thread_data (n_datasets, n_subdivisions,
n_postprocessor_outputs,
mapping,
- cell_to_patch_index_map,
- this->dofs->get_fe(),
- update_flags);
+ this->get_finite_elements(),
+ update_flags,
+ cell_to_patch_index_map);
::dealii::DataOutBase::Patch<DH::dimension, DH::space_dimension> sample_patch;
sample_patch.n_subdivisions = n_subdivisions;
- sample_patch.data.reinit (n_datasets, patch_points.size());
-
+ sample_patch.data.reinit (n_datasets,
+ Utilities::fixed_power<DH::dimension>(n_subdivisions+1));
// now build the patches in parallel
typename DataOut<dim,DH>::cell_iterator
DataOut<dim,DH>::first_cell ()
{
- return this->dofs->begin_active ();
+ return this->triangulation->begin_active ();
}
typename DataOut<dim,DH>::cell_iterator
DataOut<dim,DH>::next_cell (const typename DataOut<dim,DH>::cell_iterator &cell)
{
- // convert the iterator to an
- // active_iterator and advance
- // this to the next active cell
- typename DH::active_cell_iterator active_cell = cell;
+ // convert the iterator to an active_iterator and advance this to the next
+ // active cell
+ typename Triangulation<DH::dimension,DH::space_dimension>::
+ active_cell_iterator active_cell = cell;
++active_cell;
return active_cell;
}
DataOut<dim,DH>::first_locally_owned_cell ()
{
typename DataOut<dim,DH>::cell_iterator
- cell = this->dofs->begin_active ();
+ cell = this->triangulation->begin_active ();
- // skip cells if the current one
- // has no children (is active) and
- // is a ghost or artificial cell
- while ((cell != this->dofs->end()) &&
+ // skip cells if the current one has no children (is active) and is a ghost
+ // or artificial cell
+ while ((cell != this->triangulation->end()) &&
(cell->has_children() == false) &&
!cell->is_locally_owned())
cell = next_cell(cell);
{
typename DataOut<dim,DH>::cell_iterator
cell = next_cell(old_cell);
- while ((cell != this->dofs->end()) &&
+ while ((cell != this->triangulation->end()) &&
(cell->has_children() == false) &&
!cell->is_locally_owned())
cell = next_cell(cell);
add_data_vector<VEC> (const VEC &,
const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension>::space_dimension> &);
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension,deal_II_dimension>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const std::string &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension,deal_II_dimension>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const std::vector<std::string> &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension,deal_II_dimension>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension>::space_dimension> &);
+
+
+
// stuff needed for face data
template void
add_data_vector<VEC> (const VEC &,
const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension>::space_dimension> &);
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension-1,deal_II_dimension>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const std::string &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension-1,deal_II_dimension>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const std::vector<std::string> &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension-1,deal_II_dimension>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension>::space_dimension> &);
+
+
+
// things for DataOutRotation
template void
add_data_vector<VEC> (const VEC &,
const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension>::space_dimension> &);
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension+1,deal_II_dimension+1>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const std::string &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension+1,deal_II_dimension+1>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const std::vector<std::string> &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension>,deal_II_dimension+1,deal_II_dimension+1>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension> &,
+ const VEC &,
+ const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension>::space_dimension> &);
+
+
+
// codim 1
#if deal_II_dimension < 3
DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension+1>,deal_II_dimension,deal_II_dimension+1>::
add_data_vector<VEC> (const VEC &,
const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension+1>::space_dimension> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension+1>,deal_II_dimension,deal_II_dimension+1>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension+1> &,
+ const VEC &,
+ const std::string &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension+1>,deal_II_dimension,deal_II_dimension+1>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension+1> &,
+ const VEC &,
+ const std::vector<std::string> &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<deal_II_dimension,deal_II_dimension+1>,deal_II_dimension,deal_II_dimension+1>::
+ add_data_vector<VEC> (const DH<deal_II_dimension,deal_II_dimension+1> &,
+ const VEC &,
+ const DataPostprocessor<DH<deal_II_dimension,deal_II_dimension+1>::space_dimension> &);
#endif
DataOut_DoFData<DH<1,3>,1,3>::
add_data_vector<VEC> (const VEC &,
const DataPostprocessor<DH<1,3>::space_dimension> &);
+
+ template void
+ DataOut_DoFData<DH<1,3>,1,3>::
+ add_data_vector<VEC> (const DH<1,3> &,
+ const VEC &,
+ const std::string &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<1,3>,1,3>::
+ add_data_vector<VEC> (const DH<1,3> &,
+ const VEC &,
+ const std::vector<std::string> &,
+ const std::vector<DataComponentInterpretation::DataComponentInterpretation> &);
+
+ template void
+ DataOut_DoFData<DH<1,3>,1,3>::
+ add_data_vector<VEC> (const DH<1,3> &,
+ const VEC &,
+ const DataPostprocessor<DH<1,3>::space_dimension> &);
#endif
}
namespace DataOutFaces
{
template <int dim, int spacedim>
- template <class FE>
ParallelData<dim,spacedim>::
- ParallelData (const Quadrature<dim-1> &quadrature,
- const unsigned int n_components,
- const unsigned int n_datasets,
+ ParallelData (const unsigned int n_datasets,
const unsigned int n_subdivisions,
const std::vector<unsigned int> &n_postprocessor_outputs,
const Mapping<dim,spacedim> &mapping,
- const FE &finite_elements,
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
const UpdateFlags update_flags)
:
internal::DataOut::
- ParallelDataBase<dim,spacedim> (n_components,
- n_datasets,
+ ParallelDataBase<dim,spacedim> (n_datasets,
n_subdivisions,
- quadrature.size(),
n_postprocessor_outputs,
- finite_elements),
- q_collection (quadrature),
- mapping_collection (mapping),
- x_fe_values (this->mapping_collection,
- this->fe_collection,
- q_collection,
- update_flags)
+ mapping,
+ finite_elements,
+ update_flags,
+ true)
{}
+
/**
- * In a WorkStream context, use
- * this function to append the
- * patch computed by the parallel
- * stage to the array of patches.
+ * In a WorkStream context, use this function to append the patch computed
+ * by the parallel stage to the array of patches.
*/
template <int dim, int spacedim>
void
}
+
template <int dim, class DH>
DataOutFaces<dim,DH>::DataOutFaces(const bool so)
:
{}
+
template <int dim, class DH>
void
DataOutFaces<dim,DH>::
Assert (cell_and_face->first->is_locally_owned(),
ExcNotImplemented());
- // we use the mapping to transform the
- // vertices. However, the mapping works on
- // cells, not faces, so transform the face
- // vertex to a cell vertex, that to a unit
- // cell vertex and then, finally, that to
- // the mapped vertex. In most cases this
- // complicated procedure will be the
- // identity.
+ // we use the mapping to transform the vertices. However, the mapping works
+ // on cells, not faces, so transform the face vertex to a cell vertex, that
+ // to a unit cell vertex and then, finally, that to the mapped vertex. In
+ // most cases this complicated procedure will be the identity.
for (unsigned int vertex=0; vertex<GeometryInfo<DH::dimension-1>::vertices_per_cell; ++vertex)
patch.vertices[vertex] = data.mapping_collection[0].transform_unit_to_real_cell
(cell_and_face->first,
if (data.n_datasets > 0)
{
- data.x_fe_values.reinit (cell_and_face->first, cell_and_face->second);
- const FEFaceValues<DH::dimension> &fe_patch_values
- = data.x_fe_values.get_present_fe_values ();
+ data.reinit_all_fe_values(this->dof_data, cell_and_face->first,
+ cell_and_face->second);
+ const FEValuesBase<DH::dimension> &fe_patch_values
+ = data.get_present_fe_values (0);
const unsigned int n_q_points = fe_patch_values.n_quadrature_points;
// store the intermediate points
Assert(patch.space_dim==DH::dimension, ExcInternalError());
const std::vector<Point<DH::dimension> > &q_points=fe_patch_values.get_quadrature_points();
- // resize the patch.data member
- // in order to have enough memory
- // for the quadrature points as
- // well
+ // resize the patch.data member in order to have enough memory for the
+ // quadrature points as well
patch.data.reinit(data.n_datasets+DH::dimension,
patch.data.size(1));
- // set the flag indicating that
- // for this cell the points are
- // explicitly given
+ // set the flag indicating that for this cell the points are explicitly
+ // given
patch.points_are_available=true;
// copy points to patch.data
for (unsigned int i=0; i<DH::dimension; ++i)
// first fill dof_data
for (unsigned int dataset=0; dataset<this->dof_data.size(); ++dataset)
{
+ const FEValuesBase<DH::dimension> &fe_patch_values
+ = data.get_present_fe_values (dataset);
+ const unsigned int n_components
+ = fe_patch_values.get_fe().n_components();
const DataPostprocessor<dim> *postprocessor=this->dof_data[dataset]->postprocessor;
if (postprocessor != 0)
{
- // we have to postprocess the
- // data, so determine, which
- // fields have to be updated
+ // we have to postprocess the data, so determine, which fields
+ // have to be updated
const UpdateFlags update_flags=postprocessor->get_needed_update_flags();
- // get normals, if
- // needed. this is a
- // geometrical information
- // and thus does not depend
- // on the number of
- // components of the data
+ // get normals, if needed. this is a geometrical information and
+ // thus does not depend on the number of components of the data
// vector
if (update_flags & update_normal_vectors)
data.patch_normals=fe_patch_values.get_normal_vectors();
- if (data.n_components == 1)
+ if (n_components == 1)
{
- // at each point there is
- // only one component of
- // value, gradient etc.
+ // at each point there is only one component of value,
+ // gradient etc.
if (update_flags & update_values)
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values);
}
else
{
- // at each point there is
- // a vector valued
- // function and its
+ // at each point there is a vector valued function and its
// derivative...
+ data.resize_system_vectors(n_components);
if (update_flags & update_values)
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values_system);
= data.postprocessed_values[dataset][q](component);
}
else
- // now we use the given data
- // vector without
- // modifications. again, we
- // treat single component
- // functions separately for
- // efficiency reasons.
- if (data.n_components == 1)
+ // now we use the given data vector without modifications. again,
+ // we treat single component functions separately for efficiency
+ // reasons.
+ if (n_components == 1)
{
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values);
}
else
{
+ data.resize_system_vectors(n_components);
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values_system);
- for (unsigned int component=0; component<data.n_components;
+ for (unsigned int component=0; component<n_components;
++component)
for (unsigned int q=0; q<n_q_points; ++q)
patch.data(offset+component,q) =
data.patch_values_system[q](component);
}
- // increment the counter for the
- // actual data record
+ // increment the counter for the actual data record
offset+=this->dof_data[dataset]->n_output_variables;
}
// then do the cell data
for (unsigned int dataset=0; dataset<this->cell_data.size(); ++dataset)
{
- // we need to get at
- // the number of the
- // cell to which this
- // face belongs in
- // order to access the
- // cell data. this is
- // not readily
- // available, so choose
- // the following rather
- // inefficient way:
+ // we need to get at the number of the cell to which this face
+ // belongs in order to access the cell data. this is not readily
+ // available, so choose the following rather inefficient way:
Assert (cell_and_face->first->active(), ExcCellNotActiveForCellData());
const unsigned int cell_number
- = std::distance (this->dofs->begin_active(),
- typename DH::active_cell_iterator(cell_and_face->first));
+ = std::distance (this->triangulation->begin_active(),
+ typename Triangulation<DH::dimension,DH::space_dimension>::active_cell_iterator(cell_and_face->first));
const double value
= this->cell_data[dataset]->get_cell_data_value (cell_number);
void DataOutFaces<dim,DH>::build_patches (const Mapping<DH::dimension> &mapping,
const unsigned int n_subdivisions_)
{
- // Check consistency of redundant
- // template parameter
+ // Check consistency of redundant template parameter
Assert (dim==DH::dimension, ExcDimensionMismatch(dim, DH::dimension));
const unsigned int n_subdivisions = (n_subdivisions_ != 0)
ExcInvalidNumberOfSubdivisions(n_subdivisions));
typedef DataOut_DoFData<DH,DH::dimension+1> BaseClass;
- Assert (this->dofs != 0, typename BaseClass::ExcNoDoFHandlerSelected());
-
- // before we start the loop:
- // create a quadrature rule that
- // actually has the points on this
- // patch
- const QTrapez<1> q_trapez;
- const QIterated<DH::dimension-1> patch_points (q_trapez, n_subdivisions);
-
- const unsigned int n_components = this->dofs->get_fe().n_components();
+ Assert (this->triangulation != 0,
+ typename BaseClass::ExcNoTriangulationSelected());
unsigned int n_datasets = this->cell_data.size();
for (unsigned int i=0; i<this->dof_data.size(); ++i)
n_datasets += this->dof_data[i]->n_output_variables;
- // first count the cells we want to
- // create patches of and make sure
- // there is enough memory for that
+ // first count the cells we want to create patches of and make sure there is
+ // enough memory for that
std::vector<FaceDescriptor> all_faces;
for (FaceDescriptor face=first_face();
- face.first != this->dofs->end();
+ face.first != this->triangulation->end();
face = next_face(face))
all_faces.push_back (face);
- // clear the patches array and
- // allocate the right number of
- // elements
+ // clear the patches array and allocate the right number of elements
this->patches.clear ();
this->patches.reserve (all_faces.size());
Assert (this->patches.size() == 0, ExcInternalError());
update_flags |= this->dof_data[i]->postprocessor->get_needed_update_flags();
update_flags |= update_quadrature_points;
- internal::DataOutFaces::ParallelData<DH::dimension, DH::dimension>
- thread_data (patch_points, n_components, n_datasets,
+ internal::DataOutFaces::ParallelData<DH::dimension, DH::space_dimension>
+ thread_data (n_datasets,
n_subdivisions,
n_postprocessor_outputs,
mapping,
- this->dofs->get_fe(),
+ this->get_finite_elements(),
update_flags);
DataOutBase::Patch<DH::dimension-1,DH::space_dimension> sample_patch;
sample_patch.n_subdivisions = n_subdivisions;
sample_patch.data.reinit (n_datasets,
- patch_points.size());
+ Utilities::fixed_power<DH::dimension-1>(n_subdivisions+1));
// now build the patches in parallel
WorkStream::run (&all_faces[0],
{
// simply find first active cell
// with a face on the boundary
- typename DH::active_cell_iterator cell = this->dofs->begin_active();
- for (; cell != this->dofs->end(); ++cell)
+ typename Triangulation<DH::dimension,DH::space_dimension>::active_cell_iterator cell = this->triangulation->begin_active();
+ for (; cell != this->triangulation->end(); ++cell)
for (unsigned int f=0; f<GeometryInfo<DH::dimension>::faces_per_cell; ++f)
if (!surface_only || cell->face(f)->at_boundary())
return FaceDescriptor(cell, f);
{
FaceDescriptor face = old_face;
- // first check whether the present
- // cell has more faces on the
- // boundary
+ // first check whether the present cell has more faces on the boundary
for (unsigned int f=face.second+1; f<GeometryInfo<DH::dimension>::faces_per_cell; ++f)
if (!surface_only || face.first->face(f)->at_boundary())
// yup, that is so, so return it
return face;
};
- // otherwise find the next active
- // cell that has a face on the
- // boundary
+ // otherwise find the next active cell that has a face on the boundary
- // convert the iterator to an
- // active_iterator and advance
- // this to the next active cell
- typename DH::active_cell_iterator active_cell = face.first;
+ // convert the iterator to an active_iterator and advance this to the next
+ // active cell
+ typename Triangulation<DH::dimension,DH::space_dimension>::active_cell_iterator active_cell = face.first;
// increase face pointer by one
++active_cell;
// while there are active cells
- while (active_cell != this->dofs->end())
+ while (active_cell != this->triangulation->end())
{
- // check all the faces of this
- // active cell
+ // check all the faces of this active cell
for (unsigned int f=0; f<GeometryInfo<DH::dimension>::faces_per_cell; ++f)
if (!surface_only || active_cell->face(f)->at_boundary())
{
face.second = f;
return face;
};
- // the present cell had no
- // faces on the boundary, so
- // check next cell
+ // the present cell had no faces on the boundary, so check next cell
++active_cell;
};
- // we fell off the edge, so return
- // with invalid pointer
- face.first = this->dofs->end();
+ // we fell off the edge, so return with invalid pointer
+ face.first = this->triangulation->end();
face.second = 0;
return face;
}
namespace DataOutRotation
{
template <int dim, int spacedim>
- template <class FE>
ParallelData<dim,spacedim>::
- ParallelData (const Quadrature<dim> &quadrature,
- const unsigned int n_components,
- const unsigned int n_datasets,
+ ParallelData (const unsigned int n_datasets,
const unsigned int n_subdivisions,
const unsigned int n_patches_per_circle,
const std::vector<unsigned int> &n_postprocessor_outputs,
- const FE &finite_elements,
+ const Mapping<dim,spacedim> &mapping,
+ const std::vector<std_cxx1x::shared_ptr<dealii::hp::FECollection<dim,spacedim> > > &finite_elements,
const UpdateFlags update_flags)
:
internal::DataOut::
- ParallelDataBase<dim,spacedim> (n_components,
- n_datasets,
+ ParallelDataBase<dim,spacedim> (n_datasets,
n_subdivisions,
- quadrature.size(),
n_postprocessor_outputs,
- finite_elements),
- n_patches_per_circle (n_patches_per_circle),
- q_collection (quadrature),
- x_fe_values (this->fe_collection,
- q_collection,
- update_flags)
+ mapping,
+ finite_elements,
+ update_flags,
+ false),
+ n_patches_per_circle (n_patches_per_circle)
{}
+
/**
- * In a WorkStream context, use
- * this function to append the
- * patch computed by the parallel
- * stage to the array of patches.
+ * In a WorkStream context, use this function to append the patch computed
+ * by the parallel stage to the array of patches.
*/
template <int dim, int spacedim>
void
{
if (dim == 3)
{
- // would this function make any
- // sense after all? who would want
- // to output/compute in four space
- // dimensions?
+ // would this function make any sense after all? who would want to
+ // output/compute in four space dimensions?
Assert (false, ExcNotImplemented());
return;
}
const unsigned int n_patches_per_circle = data.n_patches_per_circle;
- // another abbreviation denoting
- // the number of q_points in each
- // direction
+ // another abbreviation denoting the number of q_points in each direction
const unsigned int n_points = data.n_subdivisions+1;
- // set up an array that holds the
- // directions in the plane of
- // rotation in which we will put
- // points in the whole domain (not
- // the rotationally reduced one in
- // which the computation took
- // place. for simplicity add the
- // initial direction at the end
- // again
+ // set up an array that holds the directions in the plane of rotation in
+ // which we will put points in the whole domain (not the rotationally
+ // reduced one in which the computation took place. for simplicity add the
+ // initial direction at the end again
std::vector<Point<DH::dimension+1> > angle_directions (n_patches_per_circle+1);
for (unsigned int i=0; i<=n_patches_per_circle; ++i)
{
for (unsigned int angle=0; angle<n_patches_per_circle; ++angle)
{
- // first compute the
- // vertices of the
- // patch. note that they
- // will have to be computed
- // from the vertices of the
- // cell, which has one
- // dimension less, however.
+ // first compute the vertices of the patch. note that they will have to
+ // be computed from the vertices of the cell, which has one dimension
+ // less, however.
switch (DH::dimension)
{
case 1:
{
const Point<DH::dimension> v = (*cell)->vertex(vertex);
- // make sure that the
- // radial variable does
- // attain negative
+ // make sure that the radial variable does attain negative
// values
Assert (v(0) >= 0, ExcRadialVariableHasNegativeValues(v(0)));
- // now set the vertices
- // of the patch
+ // now set the vertices of the patch
patches[angle].vertices[vertex] = v(0) * angle_directions[angle];
patches[angle].vertices[vertex][0] = v(1);
// then fill in data
if (data.n_datasets > 0)
{
- data.x_fe_values.reinit (*cell);
- const FEValues<DH::dimension> &fe_patch_values
- = data.x_fe_values.get_present_fe_values ();
-
+ data.reinit_all_fe_values(this->dof_data, *cell);
// first fill dof_data
for (unsigned int dataset=0; dataset<this->dof_data.size(); ++dataset)
{
+ const FEValuesBase<DH::dimension> & fe_patch_values
+ = data.get_present_fe_values(dataset);
+ const unsigned int n_components
+ = fe_patch_values.get_fe().n_components();
const DataPostprocessor<dim> *postprocessor=this->dof_data[dataset]->postprocessor;
if (postprocessor != 0)
{
// fields have to be updated
const UpdateFlags update_flags=postprocessor->get_needed_update_flags();
- if (data.n_components == 1)
+ if (n_components == 1)
{
// at each point there is
// only one component of
}
else
{
- // at each point there is
- // a vector valued
- // function and its
- // derivative...
+ data.resize_system_vectors(n_components);
+
+ // at each point there is a vector valued function and
+ // its derivative...
if (update_flags & update_values)
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values_system);
}
}
}
- else if (data.n_components == 1)
+ else if (n_components == 1)
{
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values);
else
// system of components
{
+ data.resize_system_vectors(n_components);
this->dof_data[dataset]->get_function_values (fe_patch_values,
data.patch_values_system);
- for (unsigned int component=0; component<data.n_components;
+ for (unsigned int component=0; component<n_components;
++component)
{
switch (DH::dimension)
// then do the cell data
for (unsigned int dataset=0; dataset<this->cell_data.size(); ++dataset)
{
- // we need to get at
- // the number of the
- // cell to which this
- // face belongs in
- // order to access the
- // cell data. this is
- // not readily
- // available, so choose
- // the following rather
- // inefficient way:
+ // we need to get at the number of the cell to which this face
+ // belongs in order to access the cell data. this is not readily
+ // available, so choose the following rather inefficient way:
Assert ((*cell)->active(),
ExcMessage("Cell must be active for cell data"));
const unsigned int cell_number
- = std::distance (this->dofs->begin_active(),
- typename DH::active_cell_iterator(*cell));
+ = std::distance (this->triangulation->begin_active(),
+ typename Triangulation<DH::dimension,DH::space_dimension>::active_cell_iterator(*cell));
const double value
= this->cell_data[dataset]->get_cell_data_value (cell_number);
switch (DH::dimension)
// template parameter
Assert (dim==DH::dimension, ExcDimensionMismatch(dim, DH::dimension));
typedef DataOut_DoFData<DH,DH::dimension+1> BaseClass;
- Assert (this->dofs != 0, typename BaseClass::ExcNoDoFHandlerSelected());
+ Assert (this->triangulation != 0,
+ typename BaseClass::ExcNoTriangulationSelected());
const unsigned int n_subdivisions = (nnnn_subdivisions != 0)
? nnnn_subdivisions
Assert (n_subdivisions >= 1,
ExcInvalidNumberOfSubdivisions(n_subdivisions));
- const QTrapez<1> q_trapez;
- const QIterated<DH::dimension> patch_points (q_trapez, n_subdivisions);
-
- const unsigned int n_components = this->dofs->get_fe().n_components();
unsigned int n_datasets=this->cell_data.size();
for (unsigned int i=0; i<this->dof_data.size(); ++i)
n_datasets+= this->dof_data[i]->n_output_variables;
// create patches of and make sure
// there is enough memory for that
std::vector<cell_iterator> all_cells;
- for (cell_iterator cell=first_cell(); cell != this->dofs->end();
+ for (cell_iterator cell=first_cell(); cell != this->triangulation->end();
cell = next_cell(cell))
all_cells.push_back (cell);
else
n_postprocessor_outputs[dataset] = 0;
+ const MappingQ1<DH::dimension, DH::space_dimension> mapping;
internal::DataOutRotation::ParallelData<DH::dimension, DH::space_dimension>
- thread_data (patch_points, n_components, n_datasets,
+ thread_data (n_datasets,
n_subdivisions, n_patches_per_circle,
- n_postprocessor_outputs, this->dofs->get_fe(),
+ n_postprocessor_outputs, mapping, this->get_finite_elements(),
update_flags);
std::vector<DataOutBase::Patch<DH::dimension+1,DH::space_dimension+1> >
new_patches (n_patches_per_circle);
{
new_patches[i].n_subdivisions = n_subdivisions;
new_patches[i].data.reinit (n_datasets,
- patch_points.size()
- * (n_subdivisions+1));
+ Utilities::fixed_power<DH::dimension+1>(n_subdivisions+1));
}
// now build the patches in parallel
typename DataOutRotation<dim,DH>::cell_iterator
DataOutRotation<dim,DH>::first_cell ()
{
- return this->dofs->begin_active ();
+ return this->triangulation->begin_active ();
}
// convert the iterator to an
// active_iterator and advance
// this to the next active cell
- typename DH::active_cell_iterator active_cell = cell;
+ typename Triangulation<DH::dimension,DH::space_dimension>::active_cell_iterator active_cell = cell;
++active_cell;
return active_cell;
}
--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+
+// test that DataOut with DoFHandler added with data vector works correctly
+
+#include "../tests.h"
+#include "data_out_common.h"
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out.h>
+
+
+std::string output_file_name = "data_out_06/output";
+
+
+template <int dim>
+void
+check_this (const DoFHandler<dim> &dof_handler,
+ const Vector<double> &v_node,
+ const Vector<double> &v_cell)
+{
+ DataOut<dim> data_out;
+ data_out.add_data_vector (dof_handler, v_node, "node_data");
+ data_out.add_data_vector (v_cell, "cell_data");
+ data_out.build_patches ();
+
+ data_out.write_dx (deallog.get_file_stream());
+ data_out.set_flags (DataOutBase::UcdFlags(true));
+ data_out.write_ucd (deallog.get_file_stream());
+ data_out.write_gmv (deallog.get_file_stream());
+ data_out.write_tecplot (deallog.get_file_stream());
+ data_out.write_vtk (deallog.get_file_stream());
+ data_out.write_gnuplot (deallog.get_file_stream());
+ data_out.write_deal_II_intermediate (deallog.get_file_stream());
+
+ // the following is only
+ // implemented for 2d
+ if (dim == 2)
+ {
+ data_out.write_povray (deallog.get_file_stream());
+ data_out.write_eps (deallog.get_file_stream());
+ }
+}
+
+
--- /dev/null
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
+# <x> <y> <node_data> <cell_data>
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+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
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+
+
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+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
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+ <0,20,0>
+ color White
+}
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+
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+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
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+ texture {Tex}
+}
+
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+
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
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+[written by deal.II x.y.z]
+[Version: 3]
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+
+
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+
+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
+#declare HMAX=35.;
+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
+mesh {
+triangle {
+ <0.50,0.0,0.0>,
+ <1.0,1.0,0.0>,
+ <1.0,3.0,0.50>}
+triangle {
+ <0.50,0.0,0.0>,
+ <1.0,3.0,0.50>,
+ <0.50,2.0,0.50>}
+triangle {
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+ <0.50,2.0,0.50>,
+ <0.50,11.,1.0>}
+triangle {
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+ <0.50,11.,1.0>,
+ <0.0,10.,1.0>}
+triangle {
+ <0.50,2.0,0.50>,
+ <1.0,3.0,0.50>,
+ <1.0,17.,1.0>}
+triangle {
+ <0.50,2.0,0.50>,
+ <1.0,17.,1.0>,
+ <0.50,11.,1.0>}
+triangle {
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+ <0.25,22.,0.0>,
+ <0.25,24.,0.25>}
+triangle {
+ <0.0,21.,0.0>,
+ <0.25,24.,0.25>,
+ <0.0,23.,0.25>}
+triangle {
+ <0.25,22.,0.0>,
+ <0.50,0.0,0.0>,
+ <0.50,30.,0.25>}
+triangle {
+ <0.25,22.,0.0>,
+ <0.50,30.,0.25>,
+ <0.25,24.,0.25>}
+triangle {
+ <0.0,23.,0.25>,
+ <0.25,24.,0.25>,
+ <0.25,35.,0.50>}
+triangle {
+ <0.0,23.,0.25>,
+ <0.25,35.,0.50>,
+ <0.0,9.0,0.50>}
+triangle {
+ <0.25,24.,0.25>,
+ <0.50,30.,0.25>,
+ <0.50,2.0,0.50>}
+triangle {
+ <0.25,24.,0.25>,
+ <0.50,2.0,0.50>,
+ <0.25,35.,0.50>}
+ texture {Tex}
+}
+
+%!PS-Adobe-2.0 EPSF-1.2
+%%Title: deal.II Output
+%%Creator: the deal.II library
+
+%%BoundingBox: 0 0 300 6718
+/m {moveto} bind def
+/l {lineto} bind def
+/s {setrgbcolor} bind def
+/sg {setgray} bind def
+/lx {lineto closepath stroke} bind def
+/lf {lineto closepath fill} bind def
+%%EndProlog
+
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+0 sg 75.000 4602.1 m 122.55 5729.5 l 150.00 427.93 l 102.45 6718.0 lx
+showpage
+DEAL::Checking Q2 in 3d:
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+attribute
+end
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
+#
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+SCALARS cell_data double 1
+LOOKUP_TABLE default
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
+# <x> <y> <z> <node_data> <cell_data>
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
+# <x> <y> <node_data> <cell_data>
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+[Version: 3]
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+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
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+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
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+ texture {Tex}
+}
+
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+%%Title: deal.II Output
+%%Creator: the deal.II library
+
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+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
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+# vtk DataFile Version 3.0
+#This file was generated
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+
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
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+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
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+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
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+ color Grey
+}
+
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+ <0,20,0>
+ color White
+}
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+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
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+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
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+ texture {Tex}
+}
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+end
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
+#
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+# This file was generated by the deal.II library.
+
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+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
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+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
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+
+
+camera {
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+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
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+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
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+ texture {Tex}
+}
+
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+%%Title: deal.II Output
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+
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+end
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
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+# vtk DataFile Version 3.0
+#This file was generated
+ASCII
+DATASET UNSTRUCTURED_GRID
+
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
+# <x> <y> <node_data> <cell_data>
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+[Version: 3]
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+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
+#declare HMAX=62.;
+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
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+ texture {Tex}
+}
+
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+%%Title: deal.II Output
+%%Creator: the deal.II library
+
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
+#
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+endvars
+endgmv
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
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+
+#
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+
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+#
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+#
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+[written by deal.II x.y.z]
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+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=4.0;
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+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
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+ texture {Tex}
+}
+
+%!PS-Adobe-2.0 EPSF-1.2
+%%Title: deal.II Output
+%%Creator: the deal.II library
+
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+end
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
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+
+endvars
+endgmv
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
+Variables="x", "y", "z", "node_data_0", "node_data_1", "node_data_2", "cell_data"
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+SCALARS cell_data double 1
+LOOKUP_TABLE default
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
+# <x> <y> <z> <node_data_0> <node_data_1> <node_data_2> <cell_data>
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--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+
+// test that DataOut without DoFHandler works correctly
+
+#include "../tests.h"
+#include "data_out_common.h"
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out.h>
+
+
+std::string output_file_name = "data_out_07/output";
+
+
+template <int dim>
+void
+check_this (const DoFHandler<dim> &dof_handler,
+ const Vector<double> &v_node,
+ const Vector<double> &v_cell)
+{
+ DataOut<dim> data_out;
+ data_out.attach_triangulation (dof_handler.get_tria());
+ data_out.add_data_vector (v_cell, "cell_data");
+ data_out.build_patches ();
+
+ data_out.write_dx (deallog.get_file_stream());
+ data_out.set_flags (DataOutBase::UcdFlags(true));
+ data_out.write_ucd (deallog.get_file_stream());
+ data_out.write_gmv (deallog.get_file_stream());
+ data_out.write_tecplot (deallog.get_file_stream());
+ data_out.write_vtk (deallog.get_file_stream());
+ data_out.write_gnuplot (deallog.get_file_stream());
+ data_out.write_deal_II_intermediate (deallog.get_file_stream());
+
+ // the following is only
+ // implemented for 2d
+ if (dim == 2)
+ {
+ data_out.write_povray (deallog.get_file_stream());
+ data_out.write_eps (deallog.get_file_stream());
+ }
+}
+
+
--- /dev/null
+
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+end
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+#
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+endvars
+endgmv
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
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+
+
+#
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+#
+# <x> <cell_data>
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+end
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+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
+#
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+
+
+#
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+# This file was generated by the deal.II library.
+
+
+#
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+#
+# <x> <y> <cell_data>
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+
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+
+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
+#declare HMAX=6.0;
+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
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+ texture {Tex}
+}
+
+%!PS-Adobe-2.0 EPSF-1.2
+%%Title: deal.II Output
+%%Creator: the deal.II library
+
+%%BoundingBox: 0 0 300 1230
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+[deal.II intermediate format graphics data]
+[written by deal.II x.y.z]
+[Version: 3]
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+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
+#declare HMAX=6.0;
+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
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+triangle {
+ <0.25,6.0,0.25>,
+ <0.50,6.0,0.50>,
+ <0.25,6.0,0.50>}
+ texture {Tex}
+}
+
+%!PS-Adobe-2.0 EPSF-1.2
+%%Title: deal.II Output
+%%Creator: the deal.II library
+
+%%BoundingBox: 0 0 300 1230
+/m {moveto} bind def
+/l {lineto} bind def
+/s {setrgbcolor} bind def
+/sg {setgray} bind def
+/lx {lineto closepath stroke} bind def
+/lf {lineto closepath fill} bind def
+%%EndProlog
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+showpage
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+object "deal data" class field
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+component "connections" value "cells"
+component "data" value "data"
+attribute
+end
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
+#
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+
+
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+/* This file was generated by the deal.II library.
+
+
+
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+ look_at <0,0,0>
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+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
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+}
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+}
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+}
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+}
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+} } }
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+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
+#declare HMAX=6.0;
+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
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+ <0.0,5.0,0.50>}
+triangle {
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+ <0.50,6.0,0.25>,
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+triangle {
+ <0.25,6.0,0.25>,
+ <0.50,6.0,0.50>,
+ <0.25,6.0,0.50>}
+ texture {Tex}
+}
+
+%!PS-Adobe-2.0 EPSF-1.2
+%%Title: deal.II Output
+%%Creator: the deal.II library
+
+%%BoundingBox: 0 0 300 1230
+/m {moveto} bind def
+/l {lineto} bind def
+/s {setrgbcolor} bind def
+/sg {setgray} bind def
+/lx {lineto closepath stroke} bind def
+/lf {lineto closepath fill} bind def
+%%EndProlog
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+showpage
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+object "deal data" class field
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+component "connections" value "cells"
+component "data" value "data"
+attribute
+end
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
+#
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+
--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+
+// same as data_out_faces_01 but without attaching a dof handler
+
+#include "../tests.h"
+#include "data_out_common.h"
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out_faces.h>
+
+
+std::string output_file_name = "data_out_faces_05/output";
+
+
+
+void
+my_check_this (const DoFHandler<1> &,
+ const Vector<double> &,
+ const Vector<double> &)
+{
+ // nothing to check in 1d
+}
+
+
+template <int dim>
+void
+my_check_this (const DoFHandler<dim> &dof_handler,
+ const Vector<double> &v_node,
+ const Vector<double> &v_cell)
+{
+ DataOutFaces<dim> data_out_faces;
+ data_out_faces.add_data_vector (dof_handler, v_node, "node_data");
+ data_out_faces.add_data_vector (v_cell, "cell_data");
+ data_out_faces.build_patches ();
+
+ data_out_faces.write_dx (deallog.get_file_stream());
+ data_out_faces.set_flags (DataOutBase::UcdFlags(true));
+ data_out_faces.write_ucd (deallog.get_file_stream());
+ data_out_faces.write_gmv (deallog.get_file_stream());
+ data_out_faces.write_tecplot (deallog.get_file_stream());
+ data_out_faces.write_vtk (deallog.get_file_stream());
+ data_out_faces.write_gnuplot (deallog.get_file_stream());
+ data_out_faces.write_deal_II_intermediate (deallog.get_file_stream());
+
+ // povray and eps cannot presently
+ // write out face data
+}
+
+
+template <int dim>
+void
+check_this (const DoFHandler<dim> &dof_handler,
+ const Vector<double> &v_node,
+ const Vector<double> &v_cell)
+{
+ // since we can't forward declare
+ // check_this in this file (it is forward
+ // declared in data_out_common.h), we
+ // also can't make the driver file aware of
+ // the overload for 1d. to avoid linker
+ // errors, we can consequently not overload
+ // check_this, and need this forwarder
+ // function
+ my_check_this (dof_handler, v_node, v_cell);
+}
--- /dev/null
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+#
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+#
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--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+// tests DataOut with multiple DoFHandler objects (two different scalar elements)
+
+#include "../tests.h"
+#include <deal.II/dofs/dof_handler.h>
+#include <deal.II/grid/tria.h>
+#include <deal.II/grid/grid_generator.h>
+#include <deal.II/fe/fe_q.h>
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out.h>
+
+
+std::string output_file_name = "data_out_multi_dh_01/output";
+
+
+template <int dim>
+void
+test ()
+{
+ Triangulation<dim> tria;
+ GridGenerator::hyper_cube(tria, 0., 1.);
+ tria.refine_global (1);
+ tria.begin_active()->set_refine_flag();
+ tria.execute_coarsening_and_refinement ();
+
+ FE_Q<dim> fe1(1);
+ FE_Q<dim> fe2(2);
+
+ DoFHandler<dim> dof1(tria);
+ DoFHandler<dim> dof2(tria);
+ dof1.distribute_dofs(fe1);
+ dof2.distribute_dofs(fe2);
+
+ Vector<double> v1(dof1.n_dofs()), v2(dof2.n_dofs());
+ for (unsigned int i=0; i<v1.size(); ++i) v1(i) = i;
+ for (unsigned int i=0; i<v2.size(); ++i) v2(i) = i;
+
+ DataOut<dim> data_out;
+ data_out.add_data_vector (dof1, v1, "linear");
+ data_out.add_data_vector (dof2, v2, "quadratic");
+ data_out.build_patches (2);
+
+ data_out.write_vtk (deallog.get_file_stream());
+}
+
+
+int
+main()
+{
+ try
+ {
+ std::ofstream logfile(output_file_name.c_str());
+ deallog << std::setprecision (2);
+ logfile << std::setprecision (2);
+ deallog.attach(logfile);
+ deallog.depth_console(0);
+ deallog.threshold_double(1.e-10);
+
+ test<1>();
+ test<2>();
+ test<3>();
+
+ return 0;
+ }
+ catch (std::exception &exc)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Exception on processing: " << std::endl
+ << exc.what() << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ }
+ catch (...)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Unknown exception!" << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ };
+}
+
--- /dev/null
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--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+// tests DataOut with multiple DoFHandler objects (two times the same element / dh)
+
+#include "../tests.h"
+#include <deal.II/dofs/dof_handler.h>
+#include <deal.II/grid/tria.h>
+#include <deal.II/grid/grid_generator.h>
+#include <deal.II/fe/fe_q.h>
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out.h>
+
+
+std::string output_file_name = "data_out_multi_dh_02/output";
+
+
+template <int dim>
+void
+test ()
+{
+ Triangulation<dim> tria;
+ GridGenerator::hyper_cube(tria, 0., 1.);
+ tria.refine_global (1);
+ tria.begin_active()->set_refine_flag();
+ tria.execute_coarsening_and_refinement ();
+
+ FE_Q<dim> fe1(1);
+
+ DoFHandler<dim> dof1(tria);
+ dof1.distribute_dofs(fe1);
+
+ Vector<double> v1(dof1.n_dofs()), v2(dof1.n_dofs());
+ for (unsigned int i=0; i<v1.size(); ++i) v1(i) = i;
+ for (unsigned int i=0; i<v2.size(); ++i) v2(i) = -v1(i);
+
+ DataOut<dim> data_out;
+ data_out.add_data_vector (dof1, v1, "data1");
+ data_out.add_data_vector (dof1, v2, "data2");
+ data_out.build_patches ();
+
+ data_out.write_vtk (deallog.get_file_stream());
+}
+
+
+int
+main()
+{
+ try
+ {
+ std::ofstream logfile(output_file_name.c_str());
+ deallog << std::setprecision (2);
+ logfile << std::setprecision (2);
+ deallog.attach(logfile);
+ deallog.depth_console(0);
+ deallog.threshold_double(1.e-10);
+
+ test<1>();
+ test<2>();
+ test<3>();
+
+ return 0;
+ }
+ catch (std::exception &exc)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Exception on processing: " << std::endl
+ << exc.what() << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ }
+ catch (...)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Unknown exception!" << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ };
+}
+
--- /dev/null
+
+# vtk DataFile Version 3.0
+#This file was generated
+ASCII
+DATASET UNSTRUCTURED_GRID
+
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--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+// tests DataOut with multiple DoFHandler objects (vector-valued and scalar element)
+
+#include "../tests.h"
+#include <deal.II/dofs/dof_handler.h>
+#include <deal.II/grid/tria.h>
+#include <deal.II/grid/grid_generator.h>
+#include <deal.II/fe/fe_q.h>
+#include <deal.II/fe/fe_system.h>
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out.h>
+
+
+std::string output_file_name = "data_out_multi_dh_03/output";
+
+
+template <int dim>
+void
+test ()
+{
+ Triangulation<dim> tria;
+ GridGenerator::hyper_cube(tria, 0., 1.);
+ tria.refine_global (1);
+ tria.begin_active()->set_refine_flag();
+ tria.execute_coarsening_and_refinement ();
+
+ FE_Q<dim> fe1(1);
+ FESystem<dim> fe2(FE_Q<dim>(1),dim);
+
+ DoFHandler<dim> dof1(tria);
+ DoFHandler<dim> dof2(tria);
+ dof1.distribute_dofs(fe1);
+ dof2.distribute_dofs(fe2);
+
+ Vector<double> v1(dof1.n_dofs()), v2(dof2.n_dofs());
+ for (unsigned int i=0; i<v1.size(); ++i) v1(i) = i;
+ for (unsigned int i=0; i<v2.size(); ++i) v2(i) = i;
+
+ DataOut<dim> data_out;
+ data_out.add_data_vector (dof1, v1, "scalar");
+ std::vector<DataComponentInterpretation::DataComponentInterpretation>
+ component_interpretation(dim,DataComponentInterpretation::component_is_part_of_vector);
+ data_out.add_data_vector (dof2, v2, std::vector<std::string>(dim,"vector"),
+ component_interpretation);
+ data_out.build_patches ();
+
+ data_out.write_vtk (deallog.get_file_stream());
+}
+
+
+int
+main()
+{
+ try
+ {
+ std::ofstream logfile(output_file_name.c_str());
+ deallog << std::setprecision (2);
+ logfile << std::setprecision (2);
+ deallog.attach(logfile);
+ deallog.depth_console(0);
+ deallog.threshold_double(1.e-10);
+
+ test<1>();
+ test<2>();
+ test<3>();
+
+ return 0;
+ }
+ catch (std::exception &exc)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Exception on processing: " << std::endl
+ << exc.what() << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ }
+ catch (...)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Unknown exception!" << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ };
+}
+
--- /dev/null
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--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+// similar to data_out_multi_dh_02 but using the same finite element with different DoFHandlers (renumberings)
+
+#include "../tests.h"
+#include <deal.II/dofs/dof_handler.h>
+#include <deal.II/dofs/dof_renumbering.h>
+#include <deal.II/grid/tria.h>
+#include <deal.II/grid/grid_generator.h>
+#include <deal.II/fe/fe_q.h>
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out.h>
+
+
+std::string output_file_name = "data_out_multi_dh_04/output";
+
+
+template <int dim>
+void
+test ()
+{
+ Triangulation<dim> tria;
+ GridGenerator::hyper_cube(tria, 0., 1.);
+ tria.refine_global (1);
+ tria.begin_active()->set_refine_flag();
+ tria.execute_coarsening_and_refinement ();
+
+ FE_Q<dim> fe1(1);
+
+ DoFHandler<dim> dof1(tria);
+ dof1.distribute_dofs(fe1);
+ DoFHandler<dim> dof2(tria);
+ dof2.distribute_dofs(fe1);
+ DoFRenumbering::Cuthill_McKee(dof2);
+
+ Vector<double> v1(dof1.n_dofs()), v2(dof1.n_dofs());
+ for (unsigned int i=0; i<v1.size(); ++i) v1(i) = i;
+ for (unsigned int i=0; i<v2.size(); ++i) v2(i) = -v1(i);
+
+ DataOut<dim> data_out;
+ data_out.add_data_vector (dof1, v1, "data1");
+ data_out.add_data_vector (dof2, v2, "data2");
+ data_out.build_patches ();
+
+ data_out.write_vtk (deallog.get_file_stream());
+}
+
+
+int
+main()
+{
+ try
+ {
+ std::ofstream logfile(output_file_name.c_str());
+ deallog << std::setprecision (2);
+ logfile << std::setprecision (2);
+ deallog.attach(logfile);
+ deallog.depth_console(0);
+ deallog.threshold_double(1.e-10);
+
+ test<1>();
+ test<2>();
+ test<3>();
+
+ return 0;
+ }
+ catch (std::exception &exc)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Exception on processing: " << std::endl
+ << exc.what() << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ }
+ catch (...)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Unknown exception!" << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ };
+}
+
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--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+// tests DataOut with multiple DoFHandler objects (vector-valued and scalar
+// element, adding data twice)
+
+#include "../tests.h"
+#include <deal.II/dofs/dof_handler.h>
+#include <deal.II/grid/tria.h>
+#include <deal.II/grid/grid_generator.h>
+#include <deal.II/fe/fe_q.h>
+#include <deal.II/fe/fe_system.h>
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out.h>
+
+
+std::string output_file_name = "data_out_multi_dh_05/output";
+
+
+template <int dim>
+void
+test ()
+{
+ Triangulation<dim> tria;
+ GridGenerator::hyper_cube(tria, 0., 1.);
+ tria.refine_global (1);
+ tria.begin_active()->set_refine_flag();
+ tria.execute_coarsening_and_refinement ();
+
+ FE_Q<dim> fe1(1);
+ FESystem<dim> fe2(FE_Q<dim>(1),dim);
+
+ DoFHandler<dim> dof1(tria);
+ DoFHandler<dim> dof2(tria);
+ dof1.distribute_dofs(fe1);
+ dof2.distribute_dofs(fe2);
+
+ Vector<double> v1(dof1.n_dofs()), v2(dof2.n_dofs()), v3(dof1.n_dofs()), v4(dof2.n_dofs());
+ for (unsigned int i=0; i<v1.size(); ++i) v1(i) = i;
+ for (unsigned int i=0; i<v2.size(); ++i) v2(i) = i;
+ for (unsigned int i=0; i<v1.size(); ++i) v3(i) = -v1(i);
+ for (unsigned int i=0; i<v2.size(); ++i) v4(i) = -v2(i);
+
+ std::vector<DataComponentInterpretation::DataComponentInterpretation>
+ component_interpretation(dim,DataComponentInterpretation::component_is_part_of_vector);
+ DataOut<dim> data_out;
+ data_out.add_data_vector (dof1, v1, "scalar1");
+ data_out.add_data_vector (dof2, v2, std::vector<std::string>(dim,"vector1"),
+ component_interpretation);
+ data_out.add_data_vector (dof1, v3, "scalar2");
+ data_out.add_data_vector (dof2, v4, std::vector<std::string>(dim,"vector2"),
+ component_interpretation);
+ data_out.build_patches ();
+
+ data_out.write_vtk (deallog.get_file_stream());
+}
+
+
+int
+main()
+{
+ try
+ {
+ std::ofstream logfile(output_file_name.c_str());
+ deallog << std::setprecision (2);
+ logfile << std::setprecision (2);
+ deallog.attach(logfile);
+ deallog.depth_console(0);
+ deallog.threshold_double(1.e-10);
+
+ test<1>();
+ test<2>();
+ test<3>();
+
+ return 0;
+ }
+ catch (std::exception &exc)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Exception on processing: " << std::endl
+ << exc.what() << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ }
+ catch (...)
+ {
+ deallog << std::endl << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ deallog << "Unknown exception!" << std::endl
+ << "Aborting!" << std::endl
+ << "----------------------------------------------------"
+ << std::endl;
+ return 1;
+ };
+}
+
--- /dev/null
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--- /dev/null
+// ---------------------------------------------------------------------
+// $Id$
+//
+// Copyright (C) 2003 - 2013 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE at
+// the top level of the deal.II distribution.
+//
+// ---------------------------------------------------------------------
+
+
+// same as data_out_rotation_01.cc, but without attaching a dof handler
+
+#include "../tests.h"
+#include "data_out_common.h"
+#include <deal.II/lac/sparsity_pattern.h>
+#include <deal.II/numerics/data_out_rotation.h>
+
+
+std::string output_file_name = "data_out_rotation_05/output";
+
+
+
+void
+my_check_this (const DoFHandler<3> &,
+ const Vector<double> &,
+ const Vector<double> &)
+{
+ // nothing to check in 3d
+}
+
+
+template <int dim>
+void
+my_check_this (const DoFHandler<dim> &dof_handler,
+ const Vector<double> &v_node,
+ const Vector<double> &v_cell)
+{
+ DataOutRotation<dim> data_out_rotation;
+ data_out_rotation.add_data_vector (dof_handler, v_node, "node_data");
+ data_out_rotation.add_data_vector (v_cell, "cell_data");
+ data_out_rotation.build_patches (4);
+
+ data_out_rotation.write_dx (deallog.get_file_stream());
+ data_out_rotation.set_flags (DataOutBase::UcdFlags(true));
+ data_out_rotation.write_ucd (deallog.get_file_stream());
+ data_out_rotation.write_gmv (deallog.get_file_stream());
+ data_out_rotation.write_tecplot (deallog.get_file_stream());
+ data_out_rotation.write_vtk (deallog.get_file_stream());
+ data_out_rotation.write_gnuplot (deallog.get_file_stream());
+ data_out_rotation.write_deal_II_intermediate (deallog.get_file_stream());
+
+ // following only implemented for 1d+rotation=2d
+ if (dim == 1)
+ {
+ data_out_rotation.write_povray (deallog.get_file_stream());
+ data_out_rotation.write_eps (deallog.get_file_stream());
+ }
+}
+
+
+template <int dim>
+void
+check_this (const DoFHandler<dim> &dof_handler,
+ const Vector<double> &v_node,
+ const Vector<double> &v_cell)
+{
+ // since we can't forward declare check_this in this file (it is forward
+ // declared in data_out_common.h), we also can't make the driver file aware
+ // of the overload for 1d. to avoid linker errors, we can consequently not
+ // overload check_this, and need this forwarder function
+ my_check_this (dof_handler, v_node, v_cell);
+}
--- /dev/null
+
+DEAL::Checking Q1 in 1d:
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+
+attribute "element type" string "quads"
+attribute "ref" string "positions"
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+attribute "dep" string "positions"
+object "deal data" class field
+component "positions" value "vertices"
+component "connections" value "cells"
+component "data" value "data"
+attribute
+end
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
+#
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+
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+
+endvars
+endgmv
+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
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+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
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+
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+ look_at <0,0,0>
+ angle 30
+}
+
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+}
+
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+ color White
+}
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+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
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+ texture {Tex}
+}
+
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
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+#
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+#
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+
+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
+#declare HMAX=4.0;
+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
+mesh {
+triangle {
+ <0.50,0.0,0.0>,
+ <1.0,0.0,0.0>,
+ <6.1e-17,1.0,1.0>}
+triangle {
+ <0.50,0.0,0.0>,
+ <6.1e-17,1.0,1.0>,
+ <3.1e-17,1.0,0.50>}
+triangle {
+ <3.1e-17,0.0,0.50>,
+ <6.1e-17,0.0,1.0>,
+ <-1.0,1.0,1.2e-16>}
+triangle {
+ <3.1e-17,0.0,0.50>,
+ <-1.0,1.0,1.2e-16>,
+ <-0.50,1.0,6.1e-17>}
+triangle {
+ <-0.50,0.0,6.1e-17>,
+ <-1.0,0.0,1.2e-16>,
+ <-1.8e-16,1.0,-1.0>}
+triangle {
+ <-0.50,0.0,6.1e-17>,
+ <-1.8e-16,1.0,-1.0>,
+ <-9.2e-17,1.0,-0.50>}
+triangle {
+ <-9.2e-17,0.0,-0.50>,
+ <-1.8e-16,0.0,-1.0>,
+ <1.0,1.0,-2.4e-16>}
+triangle {
+ <-9.2e-17,0.0,-0.50>,
+ <1.0,1.0,-2.4e-16>,
+ <0.50,1.0,-1.2e-16>}
+triangle {
+ <0.0,3.0,0.0>,
+ <0.25,3.0,0.0>,
+ <1.5e-17,4.0,0.25>}
+triangle {
+ <0.0,3.0,0.0>,
+ <1.5e-17,4.0,0.25>,
+ <0.0,4.0,0.0>}
+triangle {
+ <0.0,3.0,0.0>,
+ <1.5e-17,3.0,0.25>,
+ <-0.25,4.0,3.1e-17>}
+triangle {
+ <0.0,3.0,0.0>,
+ <-0.25,4.0,3.1e-17>,
+ <0.0,4.0,0.0>}
+triangle {
+ <0.0,3.0,0.0>,
+ <-0.25,3.0,3.1e-17>,
+ <-4.6e-17,4.0,-0.25>}
+triangle {
+ <0.0,3.0,0.0>,
+ <-4.6e-17,4.0,-0.25>,
+ <0.0,4.0,0.0>}
+triangle {
+ <0.0,3.0,0.0>,
+ <-4.6e-17,3.0,-0.25>,
+ <0.25,4.0,-6.1e-17>}
+triangle {
+ <0.0,3.0,0.0>,
+ <0.25,4.0,-6.1e-17>,
+ <0.0,4.0,0.0>}
+triangle {
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+ <0.50,4.0,0.0>,
+ <3.1e-17,0.0,0.50>}
+triangle {
+ <0.25,4.0,0.0>,
+ <3.1e-17,0.0,0.50>,
+ <1.5e-17,0.0,0.25>}
+triangle {
+ <1.5e-17,4.0,0.25>,
+ <3.1e-17,4.0,0.50>,
+ <-0.50,0.0,6.1e-17>}
+triangle {
+ <1.5e-17,4.0,0.25>,
+ <-0.50,0.0,6.1e-17>,
+ <-0.25,0.0,3.1e-17>}
+triangle {
+ <-0.25,4.0,3.1e-17>,
+ <-0.50,4.0,6.1e-17>,
+ <-9.2e-17,0.0,-0.50>}
+triangle {
+ <-0.25,4.0,3.1e-17>,
+ <-9.2e-17,0.0,-0.50>,
+ <-4.6e-17,0.0,-0.25>}
+triangle {
+ <-4.6e-17,4.0,-0.25>,
+ <-9.2e-17,4.0,-0.50>,
+ <0.50,0.0,-1.2e-16>}
+triangle {
+ <-4.6e-17,4.0,-0.25>,
+ <0.50,0.0,-1.2e-16>,
+ <0.25,0.0,-6.1e-17>}
+ texture {Tex}
+}
+
+%!PS-Adobe-2.0 EPSF-1.2
+%%Title: deal.II Output
+%%Creator: the deal.II library
+
+%%BoundingBox: 0 0 300 713
+/m {moveto} bind def
+/l {lineto} bind def
+/s {setrgbcolor} bind def
+/sg {setgray} bind def
+/lx {lineto closepath stroke} bind def
+/lf {lineto closepath fill} bind def
+%%EndProlog
+
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+showpage
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+# This file was generated by the deal.II library.
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+# For a description of the Tecplot format see the Tecplot documentation.
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
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+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
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+
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+ angle 30
+}
+
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+ color Grey
+}
+
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+ color White
+}
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+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
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+ texture {Tex}
+}
+
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+[Version: 3]
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+
+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
+#include "textures.inc"
+
+
+camera {
+ location <1,4,-7>
+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
+#declare HMIN=0.0;
+#declare HMAX=2.0;
+
+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
+
+mesh {
+triangle {
+ <0.50,0.0,0.0>,
+ <1.0,0.0,0.0>,
+ <6.1e-17,0.0,1.0>}
+triangle {
+ <0.50,0.0,0.0>,
+ <6.1e-17,0.0,1.0>,
+ <3.1e-17,0.0,0.50>}
+triangle {
+ <3.1e-17,0.0,0.50>,
+ <6.1e-17,0.0,1.0>,
+ <-1.0,0.0,1.2e-16>}
+triangle {
+ <3.1e-17,0.0,0.50>,
+ <-1.0,0.0,1.2e-16>,
+ <-0.50,0.0,6.1e-17>}
+triangle {
+ <-0.50,0.0,6.1e-17>,
+ <-1.0,0.0,1.2e-16>,
+ <-1.8e-16,0.0,-1.0>}
+triangle {
+ <-0.50,0.0,6.1e-17>,
+ <-1.8e-16,0.0,-1.0>,
+ <-9.2e-17,0.0,-0.50>}
+triangle {
+ <-9.2e-17,0.0,-0.50>,
+ <-1.8e-16,0.0,-1.0>,
+ <1.0,0.0,-2.4e-16>}
+triangle {
+ <-9.2e-17,0.0,-0.50>,
+ <1.0,0.0,-2.4e-16>,
+ <0.50,0.0,-1.2e-16>}
+triangle {
+ <0.0,1.0,0.0>,
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+ <1.5e-17,1.0,0.25>}
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+ <1.5e-17,1.0,0.25>,
+ <0.0,1.0,0.0>}
+triangle {
+ <0.0,1.0,0.0>,
+ <1.5e-17,1.0,0.25>,
+ <-0.25,1.0,3.1e-17>}
+triangle {
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+ <-0.25,1.0,3.1e-17>,
+ <0.0,1.0,0.0>}
+triangle {
+ <0.0,1.0,0.0>,
+ <-0.25,1.0,3.1e-17>,
+ <-4.6e-17,1.0,-0.25>}
+triangle {
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+ <-4.6e-17,1.0,-0.25>,
+ <0.0,1.0,0.0>}
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+triangle {
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+ <3.1e-17,2.0,0.50>,
+ <-0.50,2.0,6.1e-17>}
+triangle {
+ <1.5e-17,2.0,0.25>,
+ <-0.50,2.0,6.1e-17>,
+ <-0.25,2.0,3.1e-17>}
+triangle {
+ <-0.25,2.0,3.1e-17>,
+ <-0.50,2.0,6.1e-17>,
+ <-9.2e-17,2.0,-0.50>}
+triangle {
+ <-0.25,2.0,3.1e-17>,
+ <-9.2e-17,2.0,-0.50>,
+ <-4.6e-17,2.0,-0.25>}
+triangle {
+ <-4.6e-17,2.0,-0.25>,
+ <-9.2e-17,2.0,-0.50>,
+ <0.50,2.0,-1.2e-16>}
+triangle {
+ <-4.6e-17,2.0,-0.25>,
+ <0.50,2.0,-1.2e-16>,
+ <0.25,2.0,-6.1e-17>}
+ texture {Tex}
+}
+
+%!PS-Adobe-2.0 EPSF-1.2
+%%Title: deal.II Output
+%%Creator: the deal.II library
+
+%%BoundingBox: 0 0 300 413
+/m {moveto} bind def
+/l {lineto} bind def
+/s {setrgbcolor} bind def
+/sg {setgray} bind def
+/lx {lineto closepath stroke} bind def
+/lf {lineto closepath fill} bind def
+%%EndProlog
+
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+showpage
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+#
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+/* This file was generated by the deal.II library.
+
+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
+#include "colors.inc"
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+
+
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+ look_at <0,0,0>
+ angle 30
+}
+
+light_source {
+ <1,4,-7>
+ color Grey
+}
+
+light_source {
+ <0,20,0>
+ color White
+}
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+#declare Tex=texture{
+ pigment {
+ gradient y
+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
+
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+# For a description of the UCD format see the AVS Developer's guide.
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+# This file was generated by the deal.II library.
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+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
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+
+
+ For a description of the POVRAY format see the POVRAY manual.
+*/
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+
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+}
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+}
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+ color White
+}
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+ scale y*(HMAX-HMIN)*0.10
+ color_map {
+ [0.00 color Light_Purple]
+ [0.95 color Light_Purple]
+ [1.00 color White]
+} } }
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+ texture {Tex}
+}
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+# This file was generated by the deal.II library.
+
+
+#
+# For a description of the UCD format see the AVS Developer's guide.
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+# This file was generated by the deal.II library.
+
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+#
+# For a description of the Tecplot format see the Tecplot documentation.
+#
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+SCALARS cell_data double 1
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+#
+# For a description of the GNUPLOT format see the GNUPLOT manual.
+#
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projects / dealii-svn.git / commitdiff