--- /dev/null
+NVRI.software/candi is a majorily tweaked DORSAL and maintained by:
+ Uwe Koecher <uwe.koecher@hsu-hamburg.de>
+
+The origin is Dorsal (licensed under the LGPL):
+ https://bitbucket.org/fenics-project/dorsal/src
+ master c667be2 2013-11-27
+
+Please find the list of the authors of Dorsal below:
+
+Dorsal is written and maintained by:
+
+ Harish Narayanan <hnarayanan@gmail.com>
+ http://home.simula.no/~harish/
+
+Major contributors ordered by number of commits include:
+
+ Garth N. Wells <gnw20@cam.ac.uk>
+ Anders Logg <logg@simula.no>
+ Johannes Ring <johannr@simula.no>
+ Joachim B. Haga <jobh@simula.no>
+ Roman Putanowicz <putanowr@l5.pk.edu.pl>
+ Ilmar Wilbers <ilmarw@simula.no>
+
+Minor contributors in chronological order include:
+
+ Luk ShunTim <shuntim.luk@polyu.edu.hk>
+ Kristoffer Selim <selim@simula.no>
+ Peter-Jan Randewijk <pjrandew@sun.ac.za>
+ Aron Wahlberg <aron.wahlberg@gmail.com>
+ Douglas N. Arnold <arnold@umn.edu>
+ Andre Massing <massing@simula.no>
+ Dimitris Tsarouchas <dt335@cam.ac.uk>
+ Krishna S. Rudraraju <rudraa@umich.edu>
+ Alexander Jarosch <alex@alexj.at>
+ Marie E. Rognes <meg@simula.no>
+ Patrick Riesen <priesen@student.ethz.ch>
+ Gerd Wachsmuth <gerd.wachsmuth@mathematik.tu-chemnitz.de>
+ Johan Hake <hake@simula.no>
+ Benjamin Kehlet <benjamik@simula.no>
+ Richard Katz <richard.katz@earth.ox.ac.uk>
+ Fredrik Valdmanis <fredva@ifi.uio.no>
+ Michele Marcionelli <michele.marcionelli@math.ethz.ch>
+
+Missing or incorrect credits? Tell us and we will fix it!
--- /dev/null
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+Foundation. If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
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+ If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
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+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
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+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
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+ To do so, attach the following notices to the program. It is safest
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+state the exclusion of warranty; and each file should have at least
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+For more information on this, and how to apply and follow the GNU GPL, see
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+
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+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
--- /dev/null
+ GNU LESSER GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
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--- /dev/null
+2011-12 Garth N. Wells <gnw20@cam.ac.uk>
+ * Added initial support for opensuse12.1
+2011-12 Johannes Ring <johannr@simula.no>
+ * Updated to 1.0.0 versions all fenics packages
+ * Polished support for squeeze, sid, lucid, maverick and snow
+ leopard
+ * Polished petsc package
+ * Polished support for all fedora platforms
+2011-12 Harish Narayanan <hnarayanan@gmail.com>
+ * Updated to recent versions of peripheral packages
+ * Mirrored cgal and scotch locally because upstream server is
+ flaky
+ * Polished support for lion
+ * Polished support for all fedora platforms
+ * Build full petsc on lion
+ * Updated trilinos package
+2011-12 Joachim B Haga <jobh@simula.no>
+ * Added ability to install dependencies 'once:'
+2011-11 Harish Narayanan <hnarayanan@gmail.com>
+ * Polished support for snow leopard and lion
+ * Polished support for oneiric
+ * Removed troublesome pastix from petsc package
+ * Stopped supporting gentoo
+2011-11 Johan Hake <hake@simula.no>
+ * Refined trilinos package
+2011-11 Johannes Ring <johannr@simula.no>
+ * Added bison packages for debian-based platforms
+ * Updated to recent versions of all fenics packages
+ * Added libboost-math-dev to some platforms
+ * Fixed trilinos and scipy packages not finding umfpack on some
+ platforms
+2011-10 Fredrik Valdmanis <fredva@ifi.uio.no>
+ * Added patch for petsc/slepc 3.2
+2011-10 Douglas N. Arnold <arnold@umn.edu>
+ * Polished support for rhel6
+2011-10 Johannes Ring <johannr@simula.no>
+ * Added libboost-mpi-dev to newer ubuntu and debian platforms
+2011-10 Andre Massing <massing@simula.no>
+ * Updated cgal package
+2011-10 Joachim B Haga <jobh@simula.no>
+ * Polish logging of individual package configure
+ * Updated syfi package
+2011-10 Harish Narayanan <hnarayanan@gmail.com>
+ * Added logging of individual package configure
+ * Updated to recent versions of all fenics packages
+ * Updated petsc and slepc to 3.2
+ * Updated dolfin download path to reflect new branching policy
+2011-10 Garth N. Wells <gnw20@cam.ac.uk>
+ * Updated trilinos package
+ * Polished support for oneiric
+ * Updated scotch package
+2011-09 Johannes Ring <johannr@simula.no>
+ * Added mpi support to boost package
+ * Fixed boost mpi support on older ubuntu and debian platforms
+ * Updated cgal package to cmake
+2011-09 Michele Marcionelli <michele.marcionelli@math.ethz.ch>
+ * Added initial support for fedora15
+ * Added patch to help trilinos compilation
+2011-09 Andre Massing <massing@simula.no>
+ * Added initial support for opensuse11.4
+2011-09 Harish Narayanan <hnarayanan@gmail.com>
+ * Incorporated Richard Katz's suggested port_select syntax change
+ * Added patch to compile petsc as a shared library on lion
+ * Polished support for lion
+ * Updated vtk package
+ * Added boost mpi to lion add snowleopard
+2011-09 Fredrik Valdmanis <fredva@ifi.uio.no>
+ * Added initial support for lion
+2011-08 Garth N. Wells <gnw20@cam.ac.uk>
+ * Added initial support for oneiric
+2011-08 Harish Narayanan <hnarayanan@gmail.com>
+ * Updated to recent versions of peripheral packages
+ * Cached recent MTL4 source on fenicsproject.org
+2011-08 Benjamin Kehlet <benjamik@simula.no>
+ * Reported bugs in few packages
+2011-08 Johannes Ring <johannr@simula.no>
+ * Updated to recent versions of all fenics packages
+ * Polished support for rhel6
+ * Allowed vtk to build without human interaction
+ * Fixed parmetis download link
+ * Fixed bug in mtl package
+2011-07 Harish Narayanan <hnarayanan@gmail.com>
+ * Fixed bug in numpy package
+ * Added boost iostream to all debian and ubuntu platforms
+ * Fixed parmetis download link
+ * Fixed swig support by building it manually on some platforms
+2011-07 Benjamin Kehlet <benjamik@simula.no>
+ * Added pcre package
+2011-06 Johan Hake <hake@simula.no>
+ * Polished support for rhel5
+2011-06 Johannes Ring <johannr@simula.no>
+ * Fixed bug in suitesparse with metis package
+ * Debugged swig support on different platforms
+ * Updated syfi to build with cmake instead of scons
+2011-05 Harish Narayanan <hnarayanan@gmail.com>
+ * Changed distribution license to GNU Lesser General Public
+ Licence Version 3
+ * Incorporated Johannes' madlib build instructions
+ * Generalised paths to easier allow for different projects
+ * Removed unnecessary additions introduced by femdk support
+ * Polished support for natty
+2011-05 Garth N. Wells <gnw20@cam.ac.uk>
+ * Updated to recent versions of all packages
+ * Fixed scotch package
+2011-05 Anders Logg <logg@simula.no>
+ * Added support for natty
+2011-04 Harish Narayanan <hnarayanan@gmail.com>
+ * Added Andre's suggested fix for Mac OS X gfortran petsc
+ compilation error
+2011-03 Harish Narayanan <hnarayanan@gmail.com>
+ * Removed unused slepc patch
+ * Removed support for femdk
+2011-02 Anders Logg <logg@simula.no>
+ * Polished support for bigblue
+2011-02 Johannes Ring <johannr@simula.no>
+ * Made maverick similar to lucid
+ * Fixed link to stable ufc
+2011-02 Harish Narayanan <hnarayanan@gmail.com>
+ * Updated swig version
+ * Polished support for sid and squeeze
+ * Made fedora13 and fedora14 identical
+ * Updated to recent versions of peripheral packages
+ * Simplified stable fenics packages
+ * Polished support for snowleopard
+ * Updated to recent versions of all fenics packages
+2011-01 Johannes Ring <johannr@simula.no>
+ * Fixed scotch package on debian and snowleopard
+ * Made sid and squeeze identical
+2011-01 Joachim B Haga <jobh@simula.no>
+ * Converted petsc, slepc and trilinos to standard build chains
+ * Added support for separate dorsal_configure and dorsal_build
+ output
+ * Polished ML support in petsc
+ * Added support for running dolfin in valgrind
+2011-01 Harish Narayanan <hnarayanan@gmail.com>
+ * Moved snowleopard to python27
+2011-01 Johan Hake <hake@simula.no>
+ * Added ml support to petsc package
+2011-01 Garth N. Wells <gnw20@cam.ac.uk>
+ * Added support for rhel6 (and scientificlinux6)
+ * Updated petsc, scotch, boost, cmake and cgal packages
+2010-12 Johannes Ring <johannr@simula.no>
+ * Removed run time path information from dolfin build
+2010-12 Harish Narayanan <hnarayanan@gmail.com>
+ * Fixed bugs in petsc and mtl4 packages
+ * Made wget smarter about downloading files from flaky URLs
+ * Added generic cmake build option
+2010-12 Gerd Wachsmuth <gerd.wachsmuth@mathematik.tu-chemnitz.de>
+ * Install actual files instead of making symlinks
+2010-12 Garth N. Wells <gnw20@cam.ac.uk>
+ * Added support for fedora14
+ * Enabled trilinos for all supported platforms
+ * Updated petsc and trilinos versions
+2010-11 Garth N. Wells <gnw20@cam.ac.uk>
+ * Added pastix (multi-threaded LU) support to petsc
+ * Updated petsc and trilinos versions
+2010-10 Harish Narayanan <hnarayanan@gmail.com>
+ * Updated fenics.org to fenicsproject.org to reflect move
+ * Updated slepc version
+2010-09 Anders Logg <logg@simula.no>
+ * Polished support for snowleopard
+ * Updated to recent versions of all fenics packages
+2010-09 Garth N. Wells <gnw20@cam.ac.uk>
+ * Updated to slepc 3.1-p2
+2010-09 Harish Narayanan <hnarayanan@gmail.com>
+ * Updated documentation to reflect new directory structure
+ * Updated the "one-click" installer
+ * Polished support for snowleopard
+ * Updated cmake builds to respect CONFOPTS
+2010-08 Garth N. Wells <gnw20@cam.ac.uk>
+ * Moved lenny to deprecated
+ * Moved sid to supported
+2010-08 Marie E. Rognes <meg@simula.no>
+ * Polished support for gentoo
+2010-08 Harish Narayanan <hnarayanan@gmail.com>
+ * Polished support for snowleopard
+ * Added support for fedora machines without redhat-lsb
+ * Added scripts for auto-generating author lists and listing
+ unused packages and patches
+ * Removed several unused packages
+ * Fixed bugs related to new platform file placements
+ * Added support for 32/64-bit architecture-independent builds
+ * Fixed python crashing bug introduced by cmake on darwin
+ * Fixed breakages introduced in snowleopard
+ * Removed (nonexistent) support for xp
+ * Updated documentation to reflect new directory structure
+ * Updated the "one-click" installer
+2010-08 Johannes Ring <johannr@simula.no>
+ * Added patch for scientificpython to help it detect numpy
+ * Modified trilinos package to account for the new cmake-based
+ install of its 10.x branch
+2010-08 Anders Logg <logg@simula.no>
+ * Fixed bugs introduced by move to petsc/slepc 3.1x
+ * Broke many things through several hasty changes
+ * Fixed breakages introduced in snowleopard
+ * Fixed missing malloc.h bug in parmetis
+ * Modified dolfin package to account for new cmake-based install
+ * Split platform files into supported, contributed and deprecated
+ * Fixed breakages introduced in ubuntu platforms
+ * Resumed mirroring files hosted on unstable servers
+ * Polished support for maverick
+ * Tested and corrected breakages in different platforms
+ * Updated to recent versions of all fenics packages
+2010-08 Garth N. Wells <gnw20@cam.ac.uk>
+ * Updated to petsc/slepc 3.1x
+ * Broke many things through several hasty changes
+ * Added initial support for maverick
+ * Added initial support for opensuse11.3
+ * Added lib64 to library search path on 64bit machines
+ * Added out-of-source build support to cmake
+ * Fixed breakages introduced in fedora13
+ * Fixed architecture-sniffing in scotch platform
+ * Polished support for opensuse11.3
+ * Removed scons requirement from supported platform files
+ * Added initial support for squeeze
+ * Tested and corrected breakages in different platforms
+2010-07 Douglas N. Arnold <arnold@umn.edu>
+ * Added initial support for fedora13
+2010-07 Patrick Riesen <priesen@student.ethz.ch>
+ * Fixed armadillo package on 64-bit machines
+2010-06 Harish Narayanan <harish@simula.no>
+ * Updated to recent versions of all packages
+ * Updated documentation
+2010-06 Alexander Jarosch <alex@alexj.at>
+ * Polished support for gentoo/sabayon
+ * Added initial support for gentoo/sabayon
+2010-05 Harish Narayanan <harish@simula.no>
+ * Added package for armadillo
+ * Removed ssl certificate checking
+2010-05 Anders Logg <logg@simula.no>
+ * Fixed bugs introduced by new directory structure
+2010-04 Roman Putanowicz <putanowr@l5.pk.edu.pl>
+ * Generalised dorsal to handle projects other than FEniCS
+ * Added support for separate build directories
+2010-04 Harish Narayanan <harish@simula.no>
+ * Added initial support for fedora12
+ * Polished support for fedora11
+2010-04 Joachim B Haga <jobh@simula.no>
+ * Added initial support for lucid
+ * Polished platform sniffing
+2010-03 Harish Narayanan <harish@simula.no>
+ * Updated to recent versions of all packages
+2010-03 Krishna S. Rudraraju <rudraa@umich.edu>
+ * Fixed numpy link
+2010-03 Dimitris Tsarouchas <dt335@cam.ac.uk>
+ * Polished parallel support on karmic
+2010-03 Douglas N. Arnold <arnold@umn.edu>
+ * Polished support for fedora11
+ * Fixed gforge links
+2010-03 Aron Wahlberg <aron@simula.no>
+ * Fixed vtk on snowleopard
+2010-02 Harish Narayanan <harish@simula.no>
+ * Removed support for gts
+ * Modified the default installation location to be more elegant
+ * Added the ability to install single packages
+ * Enabled a parallel version of scotch
+ * Polished support for snowleopard
+ * Added package for MAdLib
+ * Updated to recent versions of all packages
+ * Added scientific python support to all platforms
+2010-01 Harish Narayanan <harish@simula.no>
+ * Fixed cgal error on leopard
+2009-12 Anders Logg <logg@simula.no>
+ * Added zenity support to the "one-click" installer
+2009-12 Harish Narayanan <harish@simula.no>
+ * Vastly improved documentation with the introduction of a small
+ usage manual
+ * Added initial version of the "one-click" installer
+ * Polished cgal package and added it to all platforms
+ * Added initial support for opensuse11.2
+ * Added skip-based platform example
+ * Updated to recent versions of all packages
+2009-11 Andre Massing <massing@simula.no>
+ * Added initial support for cgal
+2009-11 Harish Narayanan <harish@simula.no>
+ * Polished support for fedora11
+ * Added support for bzr repositories
+ * Reflected recent move of fenics projects to launchpad
+ * Removed default building of syfi and its dependencies
+2009-11 Douglas N. Arnold <arnold@umn.edu>
+ * Added initial support for fedora11
+2009-10 Harish Narayanan <harish@simula.no>
+ * Polished support for bigblue
+ * Streamlined the main build script
+ * Improved support for snowleopard (and moved to MacPorts)
+ * Improved support for rhel5
+ * Added ability to skip building of specific packages
+2009-10 Garth N. Wells <gnw20@cam.ac.uk>
+ * Improved support for rhel5
+2009-09 Joachim B Haga <jobh@simula.no>
+ * Prettified display of home directory in output
+2009-09 Harish Narayanan <harish@simula.no>
+ * Started experimenting with mumps support (in petsc)
+ * Added initial support for snowleopard
+ * Updated to recent versions of all packages
+2009-09 Harish Narayanan <harish@simula.no>
+ * Started mirroring files hosted on unstable servers
+ * Removed support for gutsy
+2009-08 Anders Logg <logg@simula.no>
+ * Added initial support for karmic
+2009-07 Harish Narayanan <harish@simula.no>
+ * Updated to recent versions of all packages
+ * Matched FEniCS package versions to Automatic Augustin
+2009-06 Harish Narayanan <harish@simula.no>
+ * Moved to the new DOLFIN build sequence
+2009-05 Joachim B Haga <jobh@simula.no>
+ * Fixed patching sequence to ensure patches don't fail after the
+ first application
+2009-05 Harish Narayanan <harish@simula.no>
+ * Introduced a simple patching schema
+2009-04 Anders Logg <logg@simula.no>
+ * Added support for jaunty
+2009-04 Harish Narayanan <harish@simula.no>
+ * Updated to recent versions of all packages
+ * Worked around Trilinos bug with repeated installs
+ * Added support for git repositories
+ * Added package for swiginac
+2009-03 Aron Wahlberg <aron.wahlberg@gmail.com>
+ * Improved support for tiger
+2009-03 Peter-Jan Randewijk <pjrandew@sun.ac.za>
+ * Added initial support for opensuse11.1
+2009-02 Harish Narayanan <harish@simula.no>
+ * Added support for lenny
+ * Modified ufc package to account for new scons-based install
+ * Generalised petsc/slepc packages to handle slight differences in
+ 2x and 3x versions of the software
+ * Updated to recent versions of all packages
+2009-01 Harish Narayanan <harish@simula.no>
+ * Added support for fedora10
+ * Added preliminary support for tiger
+ * Added support for etch
+ * Improved functionality of rhel4/rhel5
+ * Introduced a mechanism for installing stable
+ versions of FEniCS packages
+ * Updated to recent versions of all packages
+2008-11 Joachim B Haga <jobh@simula.no>
+ * Introduced the function 'default' instead of
+ 'export' to prevent clobbering existing variables
+2008-11 Harish Narayanan <harish@simula.no>
+ * Modularised DOLFIN package file and added remaining
+ dependencies
+ * Updated to recent versions of all packages
+2008-10 Joachim B Haga <jobh@simula.no>
+ * Automatically guess the platform
+ * Create build log and rebuild script for individual
+ packages
+ * Support for parallel make/scons
+ * Improved slepc/petsc packages to avoid the need
+ for manually setting LD_LIBRARY_PATH
+ * Display platfom-specific instructions as part of
+ the build process
+2008-10 Harish Narayanan <harish@simula.no>
+ * Automatically probe for system python version
+ * Added preliminary support for xp
+2008-09 Luk ShunTim <shuntim.luk@polyu.edu.hk>
+ * Added support for sid
+2008-09 Harish Narayanan <harish@simula.no>
+ * Added support for leopard
+ * Removed the need for gfortran (in mpi, petsc,
+ suitesparse)
+ * Added support for custom configuration options
+ * Added colour progress/error reporting
+ * Updated to recent versions of all packages
+2008-09 Ilmar Wilbers <ilmarw@simula.no>
+ * Added support for intrepid
+ * Added support for gutsy
+2008-08 Harish Narayanan <harish@simula.no>
+ * Changed distribution license to GPL version 3
+ * Complete rewrite; modularised the scripts
+ * Created a framework for easy addition of additional
+ platforms
+ * Added support for rhel5
+2008-07 Ilmar Wilbers <ilmarw@simula.no>
+ * Added basic error reporting
+ * Replaced autotools-based builds (for dolfin, syfi)
+ with scons
+ * Added support for hardy
+2007-06 Harish Narayanan <hnarayan@umich.edu>
+ * Initial release for rhel4
--- /dev/null
+NAME=DTM++.toolbox
+VERSION=deal.II-8.1.0
+BUILDCHAIN=ignore
+
+MODULEFILE_PATH=${INSTALL_PATH}/conf/modulefiles/candi/toolbox/${NAME}/${COMPILER}
+CONFIG_FILE=${MODULEFILE_PATH}/${VERSION}
+CURRENT_MODULES=$(echo ${LOADEDMODULES} | sed 's/:/\ /')
+
+# **********************************************************************************
+package_specific_conf() {
+ # Generate modulefile
+
+ mkdir -p ${MODULEFILE_PATH}
+ rm -f $CONFIG_FILE
+ echo "#%Module 1.0
+#
+# DTM++.TOOLBOX module for use with 'environment-modules' package:
+#
+module-whatis "Provides the DTM++.TOOLBOX."
+conflict candi/toolbox
+module load ${CURRENT_MODULES}
+
+setenv TOOLBOX ${INSTALL_PATH}
+setenv DEAL_II_DIR ${INSTALL_PATH}
+" >> $CONFIG_FILE
+
+ echo
+ echo "${NAME} has now been installed in"
+ echo
+ cecho ${GOOD} " ${INSTALL_PATH}"
+ echo
+ echo "To update your environment variables, use the created modulefile:"
+ echo
+ cecho ${GOOD} " $CONFIG_FILE"
+ echo
+}
+
--- /dev/null
+NAME=deal.II-svn
+SOURCE=https://svn.dealii.org/trunk/deal.II
+PACKING=svn
+BUILDCHAIN=custom
+
+CONFOPTS=" \
+${DEAL_CONFOPTS} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D HDF5_DIR=${HDF5_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D TRILINOS_DIR=${TRILINOS_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D PETSC_DIR=${PETSC_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D SLEPC_DIR=${SLEPC_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D CMAKE_INSTALL_PREFIX:PATH="${INSTALL_PATH}" \
+"
+
+package_specific_setup () {
+ echo "Build ${NAME} in ${BUILD_PATH}/${NAME}"
+ mkdir -p "${BUILD_PATH}/${NAME}"
+ cd "${BUILD_PATH}/${NAME}"
+
+ DEALII_SOURCE="${DOWNLOAD_PATH}/${EXTRACTSTO}"
+
+ # configure
+ cmake ${CONFOPTS} ${DEALII_SOURCE}
+
+ # make
+ make -j${PROCS}
+ make install
+}
+
+package_specific_register () {
+ export DEALII_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=8.1.0
+NAME=deal.II-${VERSION}
+SOURCE=https://dealii.googlecode.com/files/
+PACKING=.tar.gz
+CHECKSUM=aa8fadc2ce5eb674f44f997461bf668d
+BUILDCHAIN=cmake
+EXTRACTSTO=deal.II
+
--- /dev/null
+NAME=deal.II-svn
+SOURCE=https://svn.dealii.org/trunk/deal.II
+PACKING=svn
+BUILDCHAIN=cmake
+
+DEAL_CONFOPTS=" \
+-D CMAKE_BUILD_TYPE=DebugRelease \
+-D DEAL_II_COMPONENT_DOCUMENTATION:BOOL=OFF \
+-D DEAL_II_WITH_ARPACK:BOOL=OFF \
+-D DEAL_II_WITH_BOOST:BOOL=ON \
+-D DEAL_II_WITH_FUNCTIONPARSER:BOOL=ON \
+-D DEAL_II_WITH_LAPACK:BOOL=ON \
+-D DEAL_II_WITH_METIS:BOOL=OFF \
+-D DEAL_II_WITH_MUMPS:BOOL=OFF \
+-D DEAL_II_WITH_MPI:BOOL=ON \
+-D DEAL_II_WITH_NETCDF:BOOL=OFF \
+-D DEAL_II_WITH_P4EST:BOOL=ON \
+-D DEAL_II_WITH_PETSC:BOOL=OFF \
+-D DEAL_II_WITH_SLEPC:BOOL=OFF \
+-D DEAL_II_WITH_THREADS:BOOL=OFF \
+-D DEAL_II_WITH_TRILINOS:BOOL=ON \
+-D DEAL_II_WITH_UMFPACK:BOOL=ON \
+-D DEAL_II_WITH_ZLIB:BOOL=ON \
+-D DEAL_II_WITH_HDF5:BOOL=ON \
+"
+
+CONFOPTS=" \
+${DEAL_CONFOPTS} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D HDF5_DIR=${HDF5_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D TRILINOS_DIR=${TRILINOS_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D PETSC_DIR=${PETSC_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D SLEPC_DIR=${SLEPC_DIR} \
+"
+
+package_specific_register () {
+ export DEAL_II_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=1.8.12
+NAME=hdf5-${VERSION}
+SOURCE=http://www.hdfgroup.org/ftp/HDF5/releases/${NAME}/src/
+PACKING=.tar.gz
+CHECKSUM=d804802feb99b87fc668a90e6fa34411
+BUILDCHAIN=autotools
+
+CONFOPTS="--enable-shared --enable-parallel"
+
+package_specific_register () {
+ export HDF5_DIR=${INSTALL_PATH}
+}
+
--- /dev/null
+VERSION=1.9
+NAME=hwloc-${VERSION}
+SOURCE=http://www.open-mpi.org/software/hwloc/v${VERSION}/downloads/
+PACKING=.tar.gz
+CHECKSUM=1f9f9155682fe8946a97c08896109508
+BUILDCHAIN=autotools
+
--- /dev/null
+NAME=p4est-0.3.4.2
+SOURCE=http://www.p4est.org/tarball/
+PACKING=.tar.gz
+CHECKSUM=ef38ea3be84628b1548188106a5b01e7
+BUILDCHAIN=custom
+
+package_specific_setup () {
+ function bdie () {
+ echo "Error: $@"
+ exit 1
+ }
+
+ if test -z "$CFLAGS" -a -z "$P4EST_CFLAGS_FAST" ; then
+ export CFLAGS_FAST="-O2"
+ else
+ export CFLAGS_FAST="$CFLAGS $P4EST_CFLAGS_FAST"
+ fi
+ echo "CFLAGS_FAST: $CFLAGS_FAST"
+
+ if test -z "$CFLAGS" -a -z "$P4EST_CFLAGS_DEBUG" ; then
+ export CFLAGS_DEBUG="-O0 -g"
+ else
+ export CFLAGS_DEBUG="$CFLAGS $P4EST_CFLAGS_DEBUG"
+ fi
+ echo "CFLAGS_DEBUG: $CFLAGS_DEBUG"
+
+ # choose names for fast and debug build directories
+ BUILD_FAST="${BUILD_PATH}/${NAME}/FAST"
+ BUILD_DEBUG="${BUILD_PATH}/${NAME}/DEBUG"
+
+ # choose names for fast and debug installation directories
+ INSTALL_FAST="${INSTALL_PATH}/${NAME}/FAST"
+ INSTALL_DEBUG="${INSTALL_PATH}/${NAME}/DEBUG"
+
+ echo
+ echo "This script tries configure and build the p4est library."
+ echo "Build FAST: $BUILD_FAST"
+ echo "Build DEBUG: $BUILD_DEBUG"
+ echo "Install FAST: $INSTALL_FAST"
+ echo "Install DEBUG: $INSTALL_DEBUG"
+ echo "Checking environment: CFLAGS P4EST_CFLAGS_FAST P4EST_CFLAGS_DEBUG"
+
+ test -f "${UNPACK_PATH}/${EXTRACTSTO}/src/p4est.h" || bdie "Main header file missing"
+ test -f "${UNPACK_PATH}/${EXTRACTSTO}/configure" || bdie "Configure script missing"
+
+ echo "See output in files .../config.output and .../make.output"
+ echo
+
+ # remove old versions
+ if test -d "${BUILD_PATH}/${NAME}"; then
+ rm -rf "${BUILD_PATH}/${NAME}"
+ fi
+
+ echo "Build FAST version in $BUILD_FAST"
+ mkdir -p "$BUILD_FAST"
+ cd "$BUILD_FAST"
+ "${UNPACK_PATH}/${EXTRACTSTO}/configure" --enable-mpi --enable-shared \
+ --disable-vtk-binary --without-blas \
+ --prefix="$INSTALL_FAST" CFLAGS="$CFLAGS_FAST" \
+ CPPFLAGS="-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL" \
+ "$@" > config.output || bdie "Error in configure"
+ make -C sc -j${PROCS} > make.output || bdie "Error in make sc"
+ make -j${PROCS} >> make.output || bdie "Error in make p4est"
+ make install >> make.output || bdie "Error in make install"
+ echo "FAST version installed in $INSTALL_FAST"
+
+ echo
+ echo "Build DEBUG version in $BUILD_DEBUG"
+ mkdir -p "$BUILD_DEBUG"
+ cd "$BUILD_DEBUG"
+ "${UNPACK_PATH}/${EXTRACTSTO}/configure" --enable-debug --enable-mpi --enable-shared \
+ --disable-vtk-binary --without-blas \
+ --prefix="$INSTALL_DEBUG" CFLAGS="$CFLAGS_DEBUG" \
+ CPPFLAGS="-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL" \
+ "$@" > config.output || bdie "Error in configure"
+ make -C sc -j${PROCS} > make.output || bdie "Error in make sc"
+ make -j${PROCS} >> make.output || bdie "Error in make p4est"
+ make install >> make.output || bdie "Error in make install"
+ echo "DEBUG version installed in $INSTALL_DEBUG"
+ echo
+
+ cd "${BUILD_PATH}/${NAME}"
+ touch dorsal_successful_build
+}
+
+
+package_specific_register () {
+ export P4EST_DIR=${INSTALL_PATH}/${NAME}
+}
--- /dev/null
+VERSION=11.8.1
+NAME=trilinos-${VERSION}-Source
+SOURCE=http://trilinos.sandia.gov/download/files/
+PACKING=.tar.gz
+CHECKSUM=3c9465b6d63d824e9dc0365ca73c3370
+BUILDCHAIN=cmake
+
+CONFOPTS="-D Trilinos_ENABLE_OpenMP:BOOL=OFF \
+ -D TPL_ENABLE_TBB:BOOL=OFF \
+ -D Trilinos_ENABLE_OPTIONAL_PACKAGES:BOOL=ON \
+ -D Trilinos_ENABLE_Didasko:BOOL=ON \
+ -D Trilinos_ENABLE_Sacado:BOOL=ON \
+ -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
+ -D CMAKE_BUILD_TYPE:STRING=RELEASE \
+ -D CMAKE_CXX_FLAGS:STRING=-fPIC -g -O3 \
+ -D CMAKE_C_FLAGS:STRING=-fPIC -g -O3 \
+ -D CMAKE_FORTRAN_FLAGS:STRING=-g -O5 \
+ -D Trilinos_EXTRA_LINK_FLAGS:STRING=-lgfortran \
+ -D CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE \
+ -D Trilinos_VERBOSE_CONFIGURE:BOOL=FALSE \
+ -D TPL_ENABLE_MPI:BOOL=ON \
+ -D BUILD_SHARED_LIBS:BOOL=ON"
+
+package_specific_register () {
+ export TRILINOS_DIR=${INSTALL_PATH}
+}
+
--- /dev/null
+# Fedora 19
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y svn \
+# @development-tools gcc-c++ openmpi-devel cmake \
+# blas blas-devel lapack lapack-devel \
+# boost boost-devel boost-python boost-openmpi boost-openmpi-devel boost-openmpi-python \
+# doxygen graphviz graphviz-devel splint qt-devel'
+#
+# If you have multiple MPI libraries installed, make sure the
+# appropriate version is selected.
+#
+# Check available and loaded modules:
+#
+# module avial
+# module list
+#
+# and load an appropriate module, e.g.:
+#
+# module load openmpi-x86_64
+##
+
+# Platform specific variables
+default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse
+
+# Define the packages this platform needs
+PACKAGES=(
+p4est
+hdf5
+trilinos
+dealii
+)
--- /dev/null
+# Fedora 20
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y svn \
+# @development-tools gcc-c++ openmpi-devel cmake \
+# blas blas-devel lapack lapack-devel \
+# boost boost-devel boost-python boost-openmpi boost-openmpi-devel boost-openmpi-python \
+# doxygen graphviz graphviz-devel splint qt-devel'
+#
+# If you have multiple MPI libraries installed, make sure the
+# appropriate version is selected.
+#
+# Check available and loaded modules:
+#
+# module avial
+# module list
+#
+# and load an appropriate module, e.g.:
+#
+# module load openmpi-x86_64
+##
+
+# Platform specific variables
+default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse
+
+# Define the packages this platform needs
+PACKAGES=(
+once:hwloc
+once:hdf5
+once:p4est
+once:trilinos
+dealii
+skip:DTM++.toolbox
+)
+
--- /dev/null
+# RHEL 6
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y svn \
+# @development-tools gcc-c++ openmpi-devel cmake \
+# blas blas-devel lapack lapack-devel \
+# boost boost-devel boost-python boost-openmpi boost-openmpi-devel boost-openmpi-python \
+# doxygen graphviz graphviz-devel splint qt-devel'
+#
+# If you have multiple MPI libraries installed, make sure the
+# appropriate version is selected.
+#
+# Check available and loaded modules:
+#
+# module avial
+# module list
+#
+# and load an appropriate module, e.g.:
+#
+# module load openmpi-x86_64
+##
+
+# Platform specific variables
+default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse
+
+# Define the packages this platform needs
+PACKAGES=(
+once:hdf5
+once:p4est
+once:trilinos
+dealii
+skip:DTM++.toolbox
+)
--- /dev/null
+# Fedora 20
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'apt-get install build-essential automake autoconf gfortran \
+# libblas-dev liblapack-dev splint openmpi1.6 cmake git subversion'
+#
+# If you have multiple MPI libraries installed, make sure the
+# appropriate version is selected.
+##
+
+# Platform specific variables
+
+# Define the packages this platform needs
+PACKAGES=(
+once:hdf5
+once:p4est
+once:trilinos
+dealii
+skip:DTM++.toolbox
+)
--- /dev/null
+NAME=FEniCS_prepare
+BUILDCHAIN=ignore
+
+package_specific_conf() {
+ # Generate FEniCS folders
+ mkdir -p ${INSTALL_PATH}/conf
+ mkdir -p ${INSTALL_PATH}/bin
+ mkdir -p ${INSTALL_PATH}/include
+ mkdir -p ${INSTALL_PATH}/lib
+ mkdir -p ${INSTALL_PATH}/lib/python${PYTHONVER}/site-packages
+ mkdir -p ${INSTALL_PATH}/share
+ export PATH=${INSTALL_PATH}/bin:${PATH}
+ export LD_LIBRARY_PATH=${INSTALL_PATH}/lib:${LD_LIBRARY_PATH}
+ export DYLD_LIBRARY_PATH=${INSTALL_PATH}/lib:${DYLD_LIBRARY_PATH}
+ export PYTHONPATH=${INSTALL_PATH}/lib/python${PYTHONVER}/site-packages:${PYTHONPATH}
+ export PKG_CONFIG_PATH=${INSTALL_PATH}/lib/pkgconfig:${PKG_CONFIG_PATH}
+
+ # Add some extra library paths for 64 bit machines
+ if [ "$ARCH" == "x86_64" ]; then
+ export LD_LIBRARY_PATH=${INSTALL_PATH}/lib64:${LD_LIBRARY_PATH}
+ export DYLD_LIBRARY_PATH=${INSTALL_PATH}/lib64:${DYLD_LIBRARY_PATH}
+ export PYTHONPATH=${INSTALL_PATH}/lib64/python${PYTHONVER}/site-packages:${PYTHONPATH}
+ fi
+}
+
--- /dev/null
+NAME=FEniCS
+VERSION=1.3.0
+BUILDCHAIN=ignore
+
+MODULEFILE_PATH=${INSTALL_PATH}/conf/modulefiles/NVRI.software/toolbox/${NAME}
+CONFIG_FILE=${MODULEFILE_PATH}/${VERSION}
+CURRENT_MODULES=$(echo ${LOADEDMODULES} | sed 's/:/\ /')
+
+# **********************************************************************************
+package_specific_conf() {
+ # Generate modulefile
+
+ mkdir -p ${MODULEFILE_PATH}
+ rm -f $CONFIG_FILE
+ echo "#%Module 1.0
+#
+# FEniCS module for use with 'environment-modules' package:
+#
+
+conflict NVRI.software/toolbox
+
+module load ${CURRENT_MODULES}
+
+# Define prefix so PATH and MANPATH can be updated.
+setenv INSTALL_PATH ${INSTALL_PATH}
+prepend-path PATH ${INSTALL_PATH}/bin
+prepend-path PYTHONPATH ${INSTALL_PATH}/lib/python${PYTHONVER}/site-packages
+prepend-path PYTHONPATH ${INSTALL_PATH}/lib64/python${PYTHONVER}/site-packages
+prepend-path LD_LIBRARY_PATH ${INSTALL_PATH}/lib
+prepend-path DYLD_LIBRARY_PATH ${INSTALL_PATH}/lib
+prepend-path PKG_CONFIG_PATH ${INSTALL_PATH}/lib/pkgconfig
+prepend-path MANPATH ${INSTALL_PATH}/share/man
+prepend-path CPLUS_INCLUDE_PATH ${INSTALL_PATH}/include
+prepend-path CMAKE_PREFIX_PATH ${INSTALL_PATH}
+
+setenv BOOST_DIR ${INSTALL_PATH}
+" >> $CONFIG_FILE
+
+ echo
+ echo "${NAME} has now been installed in"
+ echo
+ cecho ${GOOD} " ${INSTALL_PATH}"
+ echo
+ echo "To update your environment variables, use the created modulefile:"
+ echo
+ cecho ${GOOD} " $CONFIG_FILE"
+ echo
+
+ # Generate configuration file for building against FEniCS installation
+
+ mkdir -p $INSTALL_PATH/share/fenics
+ CONFIG_FILE=$INSTALL_PATH/share/fenics/fenics.conf
+ rm -f $CONFIG_FILE
+ echo "
+# Source this file to set up your environment for building against FEniCS
+
+# Standard paths
+export INSTALL_PATH=${INSTALL_PATH}
+export PATH=\$INSTALL_PATH/bin:\$PATH
+export PYTHONPATH=\$INSTALL_PATH/lib/python${PYTHONVER}/site-packages:\$PYTHONPATH
+export LD_LIBRARY_PATH=\$INSTALL_PATH/lib:\$LD_LIBRARY_PATH
+export DYLD_LIBRARY_PATH=\$INSTALL_PATH/lib:\$DYLD_LIBRARY_PATH
+export PKG_CONFIG_PATH=\$INSTALL_PATH/lib/pkgconfig:\$PKG_CONFIG_PATH
+export MANPATH=\$INSTALL_PATH/share/man:\$MANPATH
+export CPLUS_INCLUDE_PATH=\$INSTALL_PATH/include:\$CPLUS_INCLUDE_PATH
+export CMAKE_PREFIX_PATH=\$INSTALL_PATH:\$CMAKE_PREFIX_PATH
+" >> $CONFIG_FILE
+
+ for PACKAGE in ${PACKAGES[@]}
+ do
+ case ${PACKAGE} in
+ *boost) echo "
+export BOOST_DIR=\$INSTALL_PATH
+" >> $CONFIG_FILE;;
+ *vtk | *vtkwithqt) echo "
+# FIXME: This needs to be updated when the VTK version is changed
+export LD_LIBRARY_PATH=\$INSTALL_PATH/lib/vtk-5.8:\$LD_LIBRARY_PATH
+export DYLD_LIBRARY_PATH=\$INSTALL_PATH/lib/vtk-5.8:\$DYLD_LIBRARY_PATH
+" >> $CONFIG_FILE;;
+ esac
+ done
+
+ echo "To update your environment variables, run the following command:"
+ echo
+ cecho ${GOOD} " source $CONFIG_FILE"
+ echo
+ echo "For future reference, we recommend that you add this command to your"
+ echo "configuration (.bashrc, .profile or similar)."
+ echo
+}
--- /dev/null
+NAME=armadillo-3.6.1
+SOURCE=http://downloads.sourceforge.net/arma/
+PACKING=.tar.gz
+CHECKSUM=cf0e72fbd2ed07d9fbde01ec8feee953
+BUILDCHAIN=cmake
+
+CONFOPTS="-D CMAKE_INSTALL_PREFIX:PATH=${INSTALL_PATH}
+ -D INSTALL_LIB_DIR:STRING=lib"
+
+if [ ! -z "${ATLAS_LIB_DIR}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -D LAPACK_LIBRARY:FILEPATH=${ATLAS_LIB_DIR}/liblapack.a
+ -D BLAS_LIBRARY:FILEPATH=${ATLAS_LIB_DIR}/libatlas.a"
+fi
+
+package_specific_setup() {
+ # Apply patch to prevent Armadillo from picking up MKL
+ # when ATLAS_LIB_DIR is defined
+ if [ ! -z "${ATLAS_LIB_DIR}" ]; then
+ patch -p1 --forward < ${ORIG_DIR}/FEniCS/patches/armadillo_no_mkl.patch || true
+ fi
+}
+
+package_specific_register () {
+ export ARMADILLO_DIR=${INSTALL_PATH}
+}
--- /dev/null
+# ATLAS package. This package also provides LAPACK.
+
+NAME=atlas3.10.0-with-lapack-3.4.2
+SOURCE=http://fenicsproject.org/pub/software/contrib/
+PACKING=.tar.bz2
+BUILDCHAIN=custom
+EXTRACTSTO=ATLAS
+
+package_specific_build () {
+
+ # Try to change CPU frequency
+ if [ x$CPU_SCALING == "xyes" ]; then
+
+ read -p "SCALING CPU"
+
+ # Determine number of cores and frequency
+ CORES=`grep processor /proc/cpuinfo | sort | awk '{print $3}'`
+ NUM_CORES=`grep processor /proc/cpuinfo | sort | tail -1 | awk '{print $3}'`
+ MAX_FREQ=`cpufreq-info | grep limits | awk '{print $6$7}' | tail -1`
+
+ echo
+ echo "It looks like your machine has $NUM_CORES cores and that the maximum"
+ echo "CPU frequency is $MAX_FREQ."
+ echo
+
+ echo
+ echo "Adjusting CPU frequency and governor. Be patient, this may take some time."
+ for i in $CORES; do
+ echo "Adjusting frequency for core $i"
+ sudo cpufreq-set -c $i -u $MAX_FREQ
+ sudo cpufreq-selector -g performance -c $i
+ done
+
+ fi
+
+ # Create and enter build directory
+ mkdir -p build
+ cd build
+
+ # Determine CPU frequency
+ CPU_MHZ=`cat /proc/cpuinfo | grep "cpu MHz" | awk '{print $4}' | cut -d'.' -f1 | tail -1`
+
+ # Configure ATLAS
+ ../configure -b 64 -D c -DPentiumCPS=$CPU_MHZ --shared \
+ --prefix=$INSTALL_PATH \
+ --with-netlib-lapack-tarfile=../lapack-3.4.2.tgz
+
+ # Build
+ make build
+
+ # Check
+ make check
+ make ptcheck
+ make time
+
+ # Install
+ make install
+}
+
+package_specific_install () {
+ echo "Nothing to do here, install handled by ATLAS."
+}
+
+package_specific_register () {
+ export ATLAS_DIR=${INSTALL_PATH}
+ export ATLAS_LIB_DIR=${INSTALL_PATH}/lib
+
+ # This is important for building Trilinos
+ export BLAS_LIBRARY_NAMES="cblas f77blas atlas"
+}
--- /dev/null
+VERSION=1.14
+NAME=automake-${VERSION}
+SOURCE=http://ftp.gnu.org/gnu/automake/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
+#EXTRACTSTO=Mesa-${VERSION}
\ No newline at end of file
--- /dev/null
+NAME=bzr-2.5.1
+SOURCE=http://launchpad.net/bzr/2.5/2.5.1/+download/
+PACKING=.tar.gz
+CHECKSUM=ac5079858364a046071000d5cdccb67b
+BUILDCHAIN=python
--- /dev/null
+NAME=blas
+SOURCE=http://netlib.org/blas/
+PACKING=.tgz
+BUILDCHAIN=custom
+EXTRACTSTO=BLAS
+
+package_specific_build () {
+ sed -i 's/gfortran/mpif90/g' make.inc
+ sed -i 's/-O3/-O3 -fPIC/g' make.inc
+ sed -i 's/blas$(PLAT).a/libblas.a/g' make.inc
+ make -j ${PROCS}
+}
+
+package_specific_install () {
+ cp *.a ${INSTALL_PATH}/lib/
+}
+
+package_specific_register () {
+ export BLAS_DIR=${INSTALL_PATH}
+ export LAPACKANDBLAS_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=boost_1_55_0
+SOURCE=http://downloads.sourceforge.net/boost/
+PACKING=.tar.bz2
+CHECKSUM=d6eef4b4cacb2183f2bf265a5a03a354
+BUILDCHAIN=custom
+
+if [ ! -z "${BZIP2_DIR}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -sNO_BZIP2=0
+ -sBZIP2_BINARY=bz2
+ -sBZIP2_INCLUDE=${BZIP2_DIR}/include
+ -sBZIP2_LIBPATH=${BZIP2_DIR}/lib"
+fi
+
+package_specific_build () {
+ cp -rf ${UNPACK_PATH}/${NAME}/* .
+ ./bootstrap.sh --prefix=${INSTALL_PATH}
+ echo "using mpi ;" > user-config.jam
+ ./b2 -j ${PROCS} --user-config=user-config.jam --build-dir=candi_build_dir link=shared install ${CONFOPTS}
+}
+
+package_specific_register () {
+ export BOOST_ROOT=${INSTALL_PATH}
+ export BOOST_INCLUDEDIR=${INSTALL_PATH}/include
+ export BOOST_LIBRARYDIR=${INSTALL_PATH}/lib
+ export BOOST_USE_MULTITHREADED=OFF
+}
--- /dev/null
+NAME=bzip2-1.0.6
+SOURCE=http://bzip.org/1.0.6/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+
+package_specific_build () {
+ sed -i 's/^CFLAGS=-Wall/CFLAGS=-fPIC -Wall/g' Makefile
+ make
+ make install PREFIX=${INSTALL_PATH}
+}
+
+package_specific_register () {
+ export BZIP2_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=CGAL-4.3
+SOURCE=http://fenicsproject.org/pub/software/contrib/
+PACKING=.tar.gz
+CHECKSUM=3fa2d43adbf5c05d76c5ec01f5033cc9
+BUILDCHAIN=cmake
+
+CONFOPTS="-D CMAKE_BUILD_TYPE:STRING=Release
+ -D BUILD_SHARED_LIBS:BOOL=ON
+ -D WITH_CGAL_Core:BOOL=OFF
+ -D WITH_CGAL_ImageIO:BOOL=OFF
+ -D WITH_CGAL_Qt3:BOOL=OFF
+ -D WITH_CGAL_Qt4:BOOL=OFF"
+
+if [ ! -z "${BOOST_USE_MULTITHREADED}" ]; then
+ CONFOPTS="${CONFOPTS} -D Boost_USE_MULTITHREADED:BOOL=${BOOST_USE_MULTITHREADED}"
+fi
+
+package_specific_register () {
+ export CGAL_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=cln-1.3.2
+SOURCE=ftp://ftpthep.physik.uni-mainz.de/pub/gnu/
+PACKING=.tar.bz2
+BUILDCHAIN=autotools
--- /dev/null
+NAME=cmake-2.8.12.1
+SOURCE=http://www.cmake.org/files/v2.8/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
+
+package_specific_setup () {
+ ./bootstrap --prefix=${INSTALL_PATH}
+ export CMAKE_LIBRARY_PATH=${INSTALL_PATH}
+}
--- /dev/null
+NAME=cppunit-1.12.1
+SOURCE=http://downloads.sourceforge.net/cppunit/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
+
+package_specific_register () {
+ export CPPUNIT_DIR=${INSTALL_PATH}
+}
\ No newline at end of file
--- /dev/null
+NAME=cusp-v0.3.1
+SOURCE=http://cusp-library.googlecode.com/files/
+PACKING=.zip
+BUILDCHAIN=custom
+EXTRACTSTO=cusp
+
+package_specific_register () {
+ export CUSP_DIR=${DOWNLOAD_PATH}
+}
--- /dev/null
+VERSION=0.19.2
+NAME=Cython-${VERSION}
+SOURCE=http://cython.org/release/
+PACKING=.tar.gz
+BUILDCHAIN=python
--- /dev/null
+NAME=dolfin-adjoint
+SOURCE=lp:
+PACKING=bzr
+BUILDCHAIN=python
--- /dev/null
+VERSION=snapshot
+NAME=dolfin-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/dolfin/
+PACKING=.tar.gz
--- /dev/null
+VERSION=1.3.0
+NAME=dolfin-${VERSION}
+SOURCE=https://bitbucket.org/fenics-project/dolfin/downloads/
+PACKING=.tar.gz
+CHECKSUM=bc5b9f18ee7738b2e9e6768c7aa57c58
+
+package_specific_setup () {
+ # Let CMake picks correct VTK, follow-up of issue151
+ # https://bitbucket.org/fenics-project/dolfin/issue/151
+ # Applies to DOLFIN 1.3.0, not applicable to 1.3.0+.
+ if [ "$VERSION" == "1.3.0" ]; then
+ patch -p1 --forward < ${ORIG_DIR}/FEniCS/patches/dolfin-1.3.0-vtk.patch || true
+ fi
+}
--- /dev/null
+NAME=dolfin
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=cmake
+
+CONFOPTS="-DCGAL_DISABLE_ROUNDING_MATH_CHECK:BOOL=ON"
+
+if [ -x "${SWIG_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS} -D SWIG_EXECUTABLE:FILEPATH=${SWIG_EXECUTABLE}"
+fi
+
+if [ ! -z "${PYTHON_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_EXECUTABLE:FILEPATH=${PYTHON_EXECUTABLE}"
+fi
+
+if [ ! -z "${PYTHON_INCLUDE_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_INCLUDE_DIR:PATH=${PYTHON_INCLUDE_DIR}"
+fi
+
+if [ ! -z "${PYTHON_LIBRARY}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_LIBRARY:PATH=${PYTHON_LIBRARY}"
+fi
+
+if [ ! -z "${BOOST_USE_MULTITHREADED}" ]; then
+ CONFOPTS="${CONFOPTS} -D Boost_USE_MULTITHREADED:BOOL=${BOOST_USE_MULTITHREADED}"
+fi
+
+if [ ! -z "${BLAS_LIBRARIES}" ]; then
+ CONFOPTS="${CONFOPTS} -D BLAS_LIBRARIES:FILEPATH=\"${BLAS_LIBRARIES}\""
+fi
+
+if [ ! -z "${ATLAS_LIB_DIR}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -D LAPACK_LIBRARIES=${ATLAS_LIB_DIR}/liblapack.a
+ -D BLAS_LIBRARIES=\"${ATLAS_LIB_DIR}/libcblas.a;${ATLAS_LIB_DIR}/libf77blas.a;${ATLAS_LIB_DIR}/libatlas.a\""
+fi
+
+if [ ! -z "${HDF5_DIR}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -D HDF5_INCLUDE_DIRS=${HDF5_DIR}/include"
+fi
+
--- /dev/null
+VERSION=1.0-beta
+NAME=dolfin-${VERSION}
+SOURCE=http://launchpad.net/dolfin/trunk/${VERSION}/+download/
+PACKING=.tar.gz
+BUILDCHAIN=cmake
+
+# Dolfin is compiled with GNU compiler because the Intel compiler used does not support
+# the "tuple" template and it cannot read the boost headers properly.
+
+# Compiler flags are added to ensure proper linking to Intel MKL
+COMPILERFLAGS="'-fPIC -DMPICH_IGNORE_CXX_SEEK -m64 -DMKL_ILP64 -lpthread -lmkl_rt -lifcore -lsvml'"
+
+CONFOPTS="-DCMAKE_SKIP_RPATH:BOOL=ON
+ -DCGAL_DISABLE_ROUNDING_MATH_CHECK:BOOL=ON
+ -D CMAKE_CXX_FLAGS:STRING=${COMPILERFLAGS}
+ -D CMAKE_C_FLAGS:STRING=${COMPILERFLAGS}"
+
+package_specific_setup () {
+# The CMake Armadillo does not pass because it does not pass the correct linking options.
+# The patch basically make the test pass all the time.
+ patch -p1 --forward < ${ORIG_DIR}/FEniCS/patches/dolfin-armadillo-test.patch || true
+# Intel compiler cannot find iostream. Maybe because it is not in the intel mpi.h.
+ find . -name "*.cpp" | xargs sed -i -e 's,#include <mpi.h>,#include <mpi.h>\n#include <iostream>,g'
+# Link to intel MKL BLAS
+ export BLAS_DIR=/soft/intel/mkl/10.3.6.233/composer_xe_2011_sp1.6.233/mkl/lib/intel64
+}
+
+if [ -x "${SWIG_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS} -D SWIG_EXECUTABLE:FILEPATH=${SWIG_EXECUTABLE}"
+fi
--- /dev/null
+VERSION=2.8
+NAME=dri2proto-${VERSION}
+SOURCE=http://ftp.x.org/pub/individual/proto/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
\ No newline at end of file
--- /dev/null
+NAME=eigen3_3.2.0
+SOURCE=http://fenicsproject.org/pub/software/contrib/
+PACKING=.tar.bz2
+BUILDCHAIN=cmake
+EXTRACTSTO=eigen-eigen-ffa86ffb5570
+
+package_specific_register () {
+ export EIGEN_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=snapshot
+NAME=ferari-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/ferari/
+PACKING=.tar.gz
--- /dev/null
+VERSION=1.0.0
+NAME=ferari-${VERSION}
+SOURCE=http://launchpad.net/ferari/trunk/${VERSION}/+download/
+PACKING=.tar.gz
+CHECKSUM=e41ed02517f0e8832f27d24e7755c0e2
--- /dev/null
+NAME=ferari
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=python
--- /dev/null
+VERSION=snapshot
+NAME=ffc-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/ffc/
+PACKING=.tar.gz
--- /dev/null
+VERSION=1.3.0
+NAME=ffc-${VERSION}
+SOURCE=https://bitbucket.org/fenics-project/ffc/downloads/
+PACKING=.tar.gz
+CHECKSUM=d57f736ff0b756935a5ffd7c8b30247b
--- /dev/null
+NAME=ffc
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=python
--- /dev/null
+VERSION=1.3.0
+NAME=ffc-${VERSION}
+SOURCE=http://launchpad.net/ffc/1.3.x/${VERSION}/+download/
+PACKING=.tar.gz
+BUILDCHAIN=python
--- /dev/null
+VERSION=snapshot
+NAME=fiat-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/fiat/
+PACKING=.tar.gz
--- /dev/null
+VERSION=1.3.0
+NAME=fiat-${VERSION}
+SOURCE=https://bitbucket.org/fenics-project/fiat/downloads/
+PACKING=.tar.gz
+CHECKSUM=e12267262b97a40fea97c0dad9804dd7
+
--- /dev/null
+NAME=fiat
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=python
--- /dev/null
+NAME=gccxml
+SOURCE=https://github.com/gccxml/
+PACKING=git
+BUILDCHAIN=cmake
--- /dev/null
+NAME=ginac-1.6.1
+SOURCE=ftp://ftpthep.physik.uni-mainz.de/pub/GiNaC/
+PACKING=.tar.bz2
+BUILDCHAIN=autotools
--- /dev/null
+VERSION=1.8.0.2
+NAME=git-${VERSION}
+SOURCE=http://git-core.googlecode.com/files/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
+TARGETS=('' 'install prefix=${INSTALL_PATH}')
--- /dev/null
+NAME=glib-2.32.3
+SOURCE=http://ftp.gnome.org/pub/GNOME/sources/glib/2.32/
+PACKING=.tar.xz
+BUILDCHAIN=autotools
--- /dev/null
+VERSION=1.4.17
+NAME=glproto-${VERSION}
+SOURCE=http://ftp.x.org/pub/individual/proto/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
\ No newline at end of file
--- /dev/null
+NAME=gmp-5.0.5
+SOURCE=ftp://ftp.gnu.org/gnu/gmp/
+PACKING=.tar.bz2
+BUILDCHAIN=autotools
+CONFOPTS="--enable-cxx"
+
+package_specific_register () {
+ export GMP_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=gtest-1.6.0
+SOURCE=http://googletest.googlecode.com/files/
+PACKING=.zip
+BUILDCHAIN=custom
+
+package_specific_build () {
+ mkdir -p build
+ cd build
+ cmake -DBUILD_SHARED_LIBS:BOOL=ON ..
+ make
+}
+
+package_specific_install () {
+ cp -rf include/gtest ${INSTALL_PATH}/include/
+ cp -f build/libgtest*.* ${INSTALL_PATH}/lib/
+}
+
+package_specific_register () {
+ export GTEST_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=2.2.0
+NAME=h5py-${VERSION}
+SOURCE=http://h5py.googlecode.com/files/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+
+package_specific_build () {
+ if [ ! -z "${HDF5_DIR}" ]; then
+ python setup.py build --hdf5=${HDF5_DIR} --mpi=yes
+ fi
+
+ python setup.py install --prefix=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=1.8.12
+NAME=hdf5-${VERSION}
+SOURCE=http://www.hdfgroup.org/ftp/HDF5/releases/${NAME}/src/
+PACKING=.tar.gz
+CHECKSUM=d804802feb99b87fc668a90e6fa34411
+BUILDCHAIN=autotools
+
+CONFOPTS="--with-pthread
+ --enable-unsupported
+ --enable-shared
+ --enable-production=yes
+ --enable-parallel=yes
+ --enable-largefile=yes
+ --with-default-api-version=v18"
+
+# --disable-sharedlib-rpath
+
+package_specific_register () {
+ export HDF5_DIR=${INSTALL_PATH}
+}
+
--- /dev/null
+VERSION=snapshot
+NAME=instant-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/instant/
+PACKING=.tar.gz
--- /dev/null
+VERSION=1.3.0
+NAME=instant-${VERSION}
+SOURCE=https://bitbucket.org/fenics-project/instant/downloads/
+PACKING=.tar.gz
+CHECKSUM=5c25d2ce48ee761a7113f7a80b25327e
--- /dev/null
+NAME=instant
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=python
--- /dev/null
+VERSION=0.11
+NAME=ipython-${VERSION}
+SOURCE=http://archive.ipython.org/release/${VERSION}/
+PACKING=.tar.gz
+BUILDCHAIN=python
+
--- /dev/null
+VERSION=3.3.1
+NAME=lapack-${VERSION}
+SOURCE=http://www.netlib.org/lapack/
+PACKING=.tgz
+BUILDCHAIN=custom
+
+package_specific_build () {
+ cp make.inc.example make.inc
+ sed -i 's/gfortran/mpif90 -O3 -fPIC/g' make.inc
+ sed -i 's/lapack$(PLAT).a/liblapack.a/g' make.inc
+ sed -i 's/tmglib$(PLAT).a/libtmglib.a/g' make.inc
+ sed -i 's,../../blas$(PLAT).a,${INSTALL_PATH}/lib/libblas.a,g' make.inc
+ make lapack_install lib -j ${PROCS}
+}
+
+package_specific_install () {
+ cp *.a ${INSTALL_PATH}/lib/
+}
+
+package_specific_register () {
+ export LAPACK_DIR=${INSTALL_PATH}
+ export LAPACKANDBLAS_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=libadjoint
+SOURCE=lp:
+PACKING=bzr
+BUILDCHAIN=custom
+
+package_specific_build () {
+ make install prefix=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=2.4.46
+NAME=libdrm-${VERSION}
+SOURCE=http://dri.freedesktop.org/libdrm/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
\ No newline at end of file
--- /dev/null
+NAME=libffi-3.0.11
+SOURCE=ftp://sourceware.org/pub/libffi/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
--- /dev/null
+VERSION=2.6.2
+NAME=libxml2-${VERSION}
+SOURCE=ftp://xmlsoft.org/libxml2/old/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+
+package_specific_build () {
+ ./configure --prefix=${INSTALL_PATH}
+ make -j ${PROCS}
+ make install
+}
--- /dev/null
+NAME=madlib-1.3.0
+SOURCE=http://sites.uclouvain.be/madlib/sources/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
+CONFOPTS="--enable-ann --enable-gmsh --enable-petsc --enable-extendedAPI"
+
+package_specific_setup () {
+ patch -p1 --forward < ${ORIG_DIR}/FEniCS/patches/madlib.patch || true
+}
--- /dev/null
+NAME=matplotlib-1.0.1
+SOURCE=http://sourceforge.net/projects/matplotlib/files/matplotlib/$NAME/
+PACKING=.tar.gz
+BUILDCHAIN=python
--- /dev/null
+VERSION=9.2.1
+NAME=MesaLib-${VERSION}
+SOURCE=ftp://ftp.freedesktop.org/pub/mesa/${VERSION}/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
+EXTRACTSTO=Mesa-${VERSION}
\ No newline at end of file
--- /dev/null
+VERSION=3.1.2
+NAME=mpfr-${VERSION}
+SOURCE=http://www.mpfr.org/mpfr-3.1.2/
+PACKING=.tar.bz2
+BUILDCHAIN=custom
+
+package_specific_build () {
+ ./configure --prefix=${INSTALL_PATH} --enable-shared=yes --with-gmp=${GMP_DIR}
+ make -j ${PROCS}
+ make install
+}
+
+package_specific_register () {
+ export MPFR_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=1.3.1
+NAME=mpi4py-${VERSION}
+SOURCE=https://mpi4py.googlecode.com/files/
+PACKING=.tar.gz
+BUILDCHAIN=python
--- /dev/null
+NAME=MTL-4.0.8447-Linux
+SOURCE=http://fenicsproject.org/pub/software/contrib/
+PACKING=.tar.bz2
+CHECKSUM=ff08fecd44e6e9bccc41bdd6f147952e
+BUILDCHAIN=custom
+
+package_specific_build () {
+ cp -r ${UNPACK_PATH}/${EXTRACTSTO}/usr/* ${INSTALL_PATH}
+}
+
+package_specific_register () {
+ export MTL4_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=numpy-1.6.2
+SOURCE=http://downloads.sourceforge.net/numpy/
+PACKING=.tar.gz
+BUILDCHAIN=python
+
+package_specific_setup () {
+ if [ ! -z "${ATLAS_LIB_DIR}" ]; then
+ echo "
+[DEFAULT]
+library_dirs = ${ATLAS_LIB_DIR}
+include_dirs = ${ATLAS_DIR}/include
+
+[blas_opt]
+libraries = f77blas, cblas, atlas
+
+[lapack_opt]
+libraries = lapack, f77blas, cblas, atlas
+" > site.cfg
+
+ elif [ ! -z "${LAPACKANDBLAS_DIR}" ]; then
+ echo "
+[atlas]
+library_dirs = ${LAPACKANDBLAS_DIR}
+atlas_libs = lapack, blas
+" > site.cfg
+ fi
+
+ python setup.py build --fcompiler=gnu95
+}
+
+package_specific_register () {
+ ln -sf ${INSTALL_PATH}/lib/python${PYTHONVER}/site-packages/numpy/core/include/numpy ${INSTALL_PATH}/include/python${PYTHONVER}
+}
--- /dev/null
+NAME=numpy-1.6.1
+SOURCE=http://downloads.sourceforge.net/numpy/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+
+MKLLIB=/soft/intel/mkl/10.3.6.233/composer_xe_2011_sp1.6.233/mkl/lib/intel64
+MKLINCLUDE=/soft/intel/mkl/10.3.6.233/composer_xe_2011_sp1.6.233/mkl/include
+
+package_specific_build () {
+ echo "[mkl]" > site.cfg
+ echo "library_dirs = ${MKLLIB}" >> site.cfg
+ echo "include_dirs = ${MKLINCLUDE}" >> site.cfg
+ echo "mkl_libs = mkl_intel,mkl_intel_thread,mkl_core,mkl_rt" >> site.cfg
+ python setup.py config --compiler=intelem build_clib --compiler=intelem build_ext --compiler=intelem install --prefix=${INSTALL_PATH}
+}
+
+package_specific_register () {
+ ln -sf ${INSTALL_PATH}/lib/python${PYTHONVER}/site-packages/numpy/core/include/numpy ${INSTALL_PATH}/include/python${PYTHONVER}
+}
+
--- /dev/null
+NAME=openmpi-1.6.2
+SOURCE=http://www.open-mpi.org/software/ompi/v1.6/downloads/
+PACKING=.tar.bz2
+BUILDCHAIN=autotools
+
+CONFOPTS="--enable-mpi-thread-multiple
+ --enable-opal-multi-threads
+ --with-threads=posix
+ --disable-mpi-profile"
+
+# FIXME: This must be used on OS X:
+#CONFOPTS="${CONFOPTS} --disable-mpi-f90"
--- /dev/null
+NAME=parmetis-4.0.2
+SOURCE=http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/
+PACKING=.tar.gz
+CHECKSUM=0912a953da5bb9b5e5e10542298ffdce
+BUILDCHAIN=custom
+
+package_specific_build() {
+ cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* .
+ cd metis
+ make config prefix=${INSTALL_PATH} shared=1
+ make -j ${PROCS}
+ make install
+ cd ..
+ make config prefix=${INSTALL_PATH} shared=1
+ make -j ${PROCS}
+ make install
+}
+
+package_specific_register () {
+ export PARMETIS_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=pastix_release_4030
+SOURCE=https://gforge.inria.fr/frs/download.php/32044/
+PACKING=.tar.bz2
+BUILDCHAIN=custom
+
+package_specific_build () {
+ if [ -z ${PASTIX_ARCH} ]; then
+ PASTIX_ARCH="i686_pc_linux"
+ fi
+ VERSIONBIT="_64bit"
+ VERSIONINT="_int64"
+ CCTYPES="-DFORCE_INT64 -DINTSSIZE64"
+
+ # FIXME: Use the following on 32-bit architectures:
+ #VERSIONBIT="_32bit"
+ #VERSIONINT="_int32"
+ #CCTYPES="-DFORCE_INT32 -DINTSSIZE32"
+
+ if [ "${ATLAS_LIB_DIR}" ]; then
+ BLAS_HOME="${ATLAS_LIB_DIR}"
+ BLASLIB="-L${ATLAS_LIB_DIR} -lcblas -lf77blas -latlas"
+ elif [ "${BLAS_DIR}" ]; then
+ BLAS_HOME="${BLAS_DIR}"
+ BLASLIB="-L${BLAS_DIR} -lblas"
+ else
+ BLAS_HOME="/path/to/blas"
+ BLASLIB="-lblas"
+ fi
+
+ # Create config file
+ cd src
+ cat > config.in << EOF
+HOSTARCH = ${PASTIX_ARCH}
+VERSIONBIT = ${VERSIONBIT}
+EXEEXT =
+OBJEXT = .o
+LIBEXT = .a
+CCPROG = gcc -Wall
+CFPROG = gfortran
+CF90PROG = gfortran -ffree-form
+MCFPROG = mpif90
+CF90CCPOPT = -ffree-form -x f95-cpp-input
+# Compilation options for optimization (make expor)
+CCFOPT = -O3
+# Compilation options for debug (make | make debug)
+CCFDEB = -g3
+
+LKFOPT =
+MKPROG = make
+MPCCPROG = mpicc -Wall
+CPP = cpp
+ARFLAGS = ruv
+ARPROG = ar
+EXTRALIB = -lgfortran -lm -lrt
+
+VERSIONMPI = _mpi
+VERSIONSMP = _smp
+VERSIONSCH = _static
+VERSIONINT = _int
+VERSIONPRC = _simple
+VERSIONFLT = _real
+VERSIONORD = _scotch
+
+###################################################################
+# SETTING INSTALL DIRECTORIES #
+###################################################################
+ROOT = ${INSTALL_PATH}
+INCLUDEDIR = \${ROOT}/include
+LIBDIR = \${ROOT}/lib
+BINDIR = \${ROOT}/bin
+
+###################################################################
+# SHARED LIBRARY GENERATION #
+###################################################################
+SHARED=1
+SHARED_FLAGS = -shared -Wl,-soname,__SO_NAME__
+CCFDEB := \${CCFDEB} -fPIC
+CCFOPT := \${CCFOPT} -fPIC
+CFPROG := \${CFPROG} -fPIC
+
+###################################################################
+# INTEGER TYPE #
+###################################################################
+# Uncomment the following lines for integer type support (Only 1)
+
+#VERSIONINT = _long
+#CCTYPES = -DFORCE_LONG -DLONG
+#---------------------------
+#VERSIONINT = _int32
+#CCTYPES = -DFORCE_INT32 -DINTSIZE32
+#---------------------------
+#VERSIONINT = _int64
+#CCTYPES = -DFORCE_INT64 -DINTSSIZE64
+#---------------------------
+VERSIONINT = ${VERSIONINT}
+CCTYPES = ${CCTYPES}
+
+###################################################################
+# FLOAT TYPE #
+###################################################################
+CCTYPESFLT =
+# Uncomment the following lines for double precision support
+VERSIONPRC = _double
+CCTYPESFLT := \$(CCTYPESFLT) -DFORCE_DOUBLE -DPREC_DOUBLE
+
+# Uncomment the following lines for float=complex support
+#VERSIONFLT = _complex
+#CCTYPESFLT := \$(CCTYPESFLT) -DFORCE_COMPLEX -DTYPE_COMPLEX
+
+
+###################################################################
+# MPI/THREADS #
+###################################################################
+
+# Uncomment the following lines for sequential (NOMPI) version
+#VERSIONMPI = _nompi
+#CCTYPES := \$(CCTYPES) -DFORCE_NOMPI
+#MPCCPROG = \$(CCPROG)
+#MCFPROG = \$(CFPROG)
+
+# Uncomment the following lines for non-threaded (NOSMP) version
+#VERSIONSMP = _nosmp
+#CCTYPES := \$(CCTYPES) -DFORCE_NOSMP
+
+# Uncomment the following line to enable a progression thread
+#CCPASTIX := \$(CCPASTIX) -DTHREAD_COMM
+
+# Uncomment the following line if your MPI doesn't support MPI_THREAD_MULTIPLE level
+#CCPASTIX := \$(CCPASTIX) -DPASTIX_FUNNELED
+
+# Uncomment the following line if your MPI doesn't support MPI_Datatype correctly
+#CCPASTIX := \$(CCPASTIX) -DNO_MPI_TYPE
+
+# Uncomment the following line if you want to use semaphore barrier
+# instead of MPI barrier (with IPARM_AUTOSPLIT_COMM)
+#CCPASTIX := \$(CCPASTIX) -DWITH_SEM_BARRIER
+
+# Uncomment the following lines to enable StarPU.
+#CCPASTIX := \${CCPASTIX} \`pkg-config libstarpu --cflags\` -DWITH_STARPU
+#EXTRALIB := \$(EXTRALIB) \`pkg-config libstarpu --libs\`
+
+# Uncomment the following line to enable StarPU profiling
+# ( IPARM_VERBOSE > API_VERBOSE_NO ).
+#CCPASTIX := \${CCPASTIX} -DSTARPU_PROFILING
+
+# Uncomment the following line to disable CUDA (StarPU)
+#CCPASTIX := \${CCPASTIX} -DFORCE_NO_CUDA
+
+###################################################################
+# Options #
+###################################################################
+
+# Show memory usage statistics
+#CCPASTIX := \$(CCPASTIX) -DMEMORY_USAGE
+
+# Show memory usage statistics in solver
+#CCPASTIX := \$(CCPASTIX) -DSTATS_SOPALIN
+
+# Uncomment following line for dynamic thread scheduling support
+#CCPASTIX := \$(CCPASTIX) -DPASTIX_DYNSCHED
+
+# Uncomment the following lines for Out-of-core
+#CCPASTIX := \$(CCPASTIX) -DOOC -DOOC_NOCOEFINIT -DOOC_DETECT_DEADLOCKS
+
+###################################################################
+# GRAPH PARTITIONING #
+###################################################################
+
+# Uncomment the following lines for using metis ordering
+#VERSIONORD = _metis
+#METIS_HOME = \${HOME}/metis-4.0
+#CCPASTIX := \$(CCPASTIX) -DMETIS -I\$(METIS_HOME)/Lib
+#EXTRALIB := \$(EXTRALIB) -L\$(METIS_HOME) -lmetis
+
+# Scotch always needed to compile
+SCOTCH_HOME ?= ${SCOTCH_DIR}
+SCOTCH_INC ?= \$(SCOTCH_HOME)/include
+SCOTCH_LIB ?= \$(SCOTCH_HOME)/lib
+# Uncomment on of this blocks
+#scotch
+#CCPASTIX := \$(CCPASTIX) -I\$(SCOTCH_INC) -DWITH_SCOTCH
+#EXTRALIB := \$(EXTRALIB) -L\$(SCOTCH_LIB) -lscotch -lscotcherrexit
+#ptscotch
+CCPASTIX := \$(CCPASTIX) -I\$(SCOTCH_INC) -DDISTRIBUTED -DWITH_SCOTCH
+EXTRALIB := \$(EXTRALIB) -L\$(SCOTCH_LIB) -lptscotch -lscotcherrexit
+
+###################################################################
+# Portable Hardware Locality #
+###################################################################
+# If HwLoc library is available, Uncomment the following lines to bind correctly threads on cpus
+#HWLOC_HOME ?= /opt/hwloc/
+#HWLOC_INC ?= \$(HWLOC_HOME)/include
+#HWLOC_LIB ?= \$(HWLOC_HOME)/lib
+#CCPASTIX := \$(CCPASTIX) -I\$(HWLOC_INC) -DWITH_HWLOC
+#EXTRALIB := \$(EXTRALIB) -L\$(HWLOC_LIB) -lhwloc
+
+###################################################################
+# MARCEL #
+###################################################################
+
+# Uncomment following lines for marcel thread support
+#VERSIONSMP := \$(VERSIONSMP)_marcel
+#CCPASTIX := \$(CCPASTIX) \`pm2-config --cflags\` -I\${PM2_ROOT}/marcel/include/pthread
+#EXTRALIB := \$(EXTRALIB) \`pm2-config --libs\`
+# ---- Thread Posix ------
+EXTRALIB := \$(EXTRALIB) -lpthread
+
+# Uncomment following line for bubblesched framework support (need marcel support)
+#VERSIONSCH = _dyn
+#CCPASTIX := \$(CCPASTIX) -DPASTIX_BUBBLESCHED
+
+###################################################################
+# BLAS #
+###################################################################
+
+# Choose Blas library (Only 1)
+# Do not forget to set BLAS_HOME if it is not in your environnement
+BLAS_HOME = ${BLAS_HOME}
+BLASLIB = ${BLASLIB}
+#---- Blas ----
+#BLASLIB = -lblas
+#---- Gotoblas ----
+#BLASLIB = -L\${BLAS_HOME} -lgoto
+#---- MKL ----
+#Uncomment the correct line
+#BLASLIB = -L\$(BLAS_HOME) -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
+#BLASLIB = -L\$(BLAS_HOME) -lmkl_intel -lmkl_sequential -lmkl_core
+#---- Acml ----
+#BLASLIB = -L\$(BLAS_HOME) -lacml
+
+###################################################################
+# PYTHON WRAPPER #
+###################################################################
+#MPI4PY_DIR = /path/to//mpi4py
+#MPI4PY_INC = \$(MPI4PY_DIR)/src/include/
+#MPI4PY_LIBDIR = \$(MPI4PY_DIR)/build/lib.linux-x86_64-2.7/
+#PYTHON_INC = /usr/include/python2.7/
+#CCTYPES := \$(CCTYPES) -fPIC
+
+###################################################################
+# DO NOT TOUCH #
+###################################################################
+
+FOPT := \$(CCFOPT)
+FDEB := \$(CCFDEB)
+CCHEAD := \$(CCPROG) \$(CCTYPES) \$(CCFOPT)
+CCFOPT := \$(CCFOPT) \$(CCTYPES) \$(CCPASTIX)
+CCFDEB := \$(CCFDEB) \$(CCTYPES) \$(CCPASTIX)
+
+
+###################################################################
+# MURGE COMPATIBILITY #
+###################################################################
+# Uncomment if you need MURGE interface to be thread safe
+# CCPASTIX := \$(CCPASTIX) -DMURGE_THREADSAFE
+
+MAKE = \$(MKPROG)
+CC = \$(MPCCPROG)
+CFLAGS = \$(CCFOPT) \$(CCTYPESFLT)
+FC = \$(MCFPROG)
+FFLAGS = \$(CCFOPT)
+LDFLAGS = \$(EXTRALIB) \$(BLASLIB)
+EOF
+
+ # Build and install
+ make -j ${PROCS}
+ make install
+
+ # Workaround for bug in 4030 release
+ sed -i 's/u_int64_t/uint64_t/g' ${INSTALL_PATH}/include/pastix.h
+}
+
+package_specific_register () {
+ export PASTIX_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=pcre-8.21
+SOURCE=http://downloads.sourceforge.net/pcre/
+PACKING=.tar.gz
+CHECKSUM=b8c9469717262a1e486cffc288b28283
+BUILDCHAIN=autotools
+
--- /dev/null
+NAME=petsc-3.4.2
+SOURCE=http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
+PACKING=.tar.gz
+CHECKSUM=449e27f3c9a37d0bd9d7941cc79a09a9
+BUILDCHAIN=custom
+
+CONFOPTS="COPTFLAGS=-O2
+ --with-debugging=0 --with-shared-libraries=1
+ --with-clanguage=cxx --with-c-support=1"
+
+for external_pkg in umfpack hypre mumps scalapack blacs ptscotch scotch metis parmetis ${PETSC_EXTRA_PACKAGES}; do
+ CONFOPTS="${CONFOPTS} --download-${external_pkg}=1"
+done
+
+if [ "${TRILINOS_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} --with-ml=1
+ --with-ml-lib=${TRILINOS_DIR}/lib/libml.so
+ --with-ml-include=${TRILINOS_DIR}/include"
+fi
+
+if [ "${CUDA_DIR}" ] && [ "${CUSP_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} --with-cuda=1 --with-cuda-dir=${CUDA_DIR}
+ --with-cusp=1 --with-cusp-dir=${CUSP_DIR}
+ --with-thrust=1 --with-thrust-dir=${CUDA_DIR}/include"
+fi
+
+package_specific_build () {
+ cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* .
+ ./configure --prefix=${INSTALL_PATH} ${CONFOPTS}
+ make PETSC_DIR=${PWD} PETSC_ARCH=${PETSC_ARCH} all
+ make PETSC_DIR=${PWD} PETSC_ARCH=${PETSC_ARCH} install
+}
+
+package_specific_register () {
+ export PETSC_DIR=${INSTALL_PATH}
+ unset PETSC_ARCH
+}
--- /dev/null
+NAME=pkg-config-0.28
+SOURCE=http://pkgconfig.freedesktop.org/releases/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
--- /dev/null
+VERSION=3.4
+NAME=ply-${VERSION}
+SOURCE=http://www.dabeaz.com/ply/
+PACKING=.tar.gz
+BUILDCHAIN=python
--- /dev/null
+VERSION=2.7.2
+NAME=Python-${VERSION}
+SOURCE=http://www.python.org/ftp/python/${VERSION}/
+PACKING=.tar.bz2
+BUILDCHAIN=autotools
+CONFOPTS="--enable-shared"
+
+package_specific_setup() {
+ patch -p1 --forward < ${ORIG_DIR}/FEniCS/patches/python.patch || true
+}
+
+package_specific_register() {
+ export PYTHON_DIR=${INSTALL_PATH}
+ export PYTHON_EXECUTABLE=${PYTHON_DIR}/bin/python
+ export PYTHON_INCLUDE_DIR=${PYTHON_DIR}/include/python2.7
+ # FIXME: should be .dylib on OS X
+ export PYTHON_LIBRARY=${PYTHON_DIR}/lib/libpython2.7.so
+}
--- /dev/null
+NAME=ScientificPython-2.8
+SOURCE=http://sourcesup.cru.fr/frs/download.php/2309/
+PACKING=.tar.gz
+CHECKSUM=82d8592635d6ae8608b3073dacf9e694
+BUILDCHAIN=python
+
+package_specific_setup () {
+ patch -p --forward < ${ORIG_DIR}/FEniCS/patches/scientificpython.patch || true
+}
--- /dev/null
+NAME=scipy-0.12.0
+SOURCE=http://downloads.sourceforge.net/scipy/
+PACKING=.tar.gz
+BUILDCHAIN=python
+
+package_specific_setup () {
+ if [ ! -z "${ATLAS_LIB_DIR}" ]; then
+ echo "
+[blas_opt]
+library_dirs = ${ATLAS_LIB_DIR}
+include_dirs = ${ATLAS_DIR}/include
+libraries = f77blas, cblas, atlas
+
+[lapack_opt]
+library_dirs = ${ATLAS_LIB_DIR}
+include_dirs = ${ATLAS_DIR}/include
+libraries = lapack, f77blas, cblas, atlas
+" >> site.cfg
+ fi
+
+ if [ ! -z "${UMFPACK_DIR}" ]; then
+ echo "
+[amd]
+library_dirs = ${UMFPACK_DIR}/lib
+include_dirs = ${UMFPACK_DIR}/include/suitesparse
+amd_libs = amd
+
+[umfpack]
+library_dirs = ${UMFPACK_DIR}/lib
+include_dirs = ${UMFPACK_DIR}/include/suitesparse
+umfpack_libs = umfpack
+" >> site.cfg
+ fi
+}
--- /dev/null
+NAME=scons-2.0.1
+SOURCE=http://downloads.sourceforge.net/scons/
+PACKING=.tar.gz
+CHECKSUM=beca648b894cdbf85383fffc79516d18
+BUILDCHAIN=python
+
--- /dev/null
+NAME=scotch_6.0.0_esmumps
+SOURCE=http://fenicsproject.org/pub/software/contrib/
+PACKING=.tar.gz
+CHECKSUM=c50d6187462ba801f9a82133ee666e8e
+BUILDCHAIN=autotools
+EXTRACTSTO=scotch_6.0.0_esmumps/src
+PROCS=1
+TARGETS=('' 'ptscotch' 'ptesmumps')
+
+package_specific_setup () {
+ cd ${UNPACK_PATH}/${EXTRACTSTO}
+ if [ ${SCOTCH_ARCH} == "pc_linux2" ]
+ then
+ SCOTCH_ARCH=$(echo $ARCH|sed 's/_/-/g')_${SCOTCH_ARCH}
+ fi
+ perl -pi -e 's/^CFLAGS\t\t=/CFLAGS = -fPIC/g' Make.inc/Makefile.inc.${SCOTCH_ARCH}
+ perl -pi -e 's/^CCS.*= gcc/CCS = mpicc/g' Make.inc/Makefile.inc.${SCOTCH_ARCH}
+ perl -pi -e 's/^CCD.*= gcc/CCD = mpicc/g' Make.inc/Makefile.inc.${SCOTCH_ARCH}
+ if [ ${SCOTCH_ARCH} == "i686_mac_darwin8" ]
+ then
+ # Darwin does not have a pthread_barrier_t implementation
+ perl -pi -e 's/-DSCOTCH_PTHREAD/-DCOMMON_PTHREAD_BARRIER/g' Make.inc/Makefile.inc.${SCOTCH_ARCH}
+ else
+ perl -pi -e 's/-DSCOTCH_PTHREAD//g' Make.inc/Makefile.inc.${SCOTCH_ARCH}
+ fi
+ ln -sf Make.inc/Makefile.inc.${SCOTCH_ARCH} Makefile.inc
+}
+
+package_specific_install () {
+ make ptesmumps install -j ${PROCS} prefix=${INSTALL_PATH}
+ cp -f ../lib/*scotc*[^m].a ${INSTALL_PATH}/lib
+ cp -f ../lib/*esmumps.a ${INSTALL_PATH}/lib
+}
+
+package_specific_register () {
+ export SCOTCH_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=1.4.1
+NAME=setuptools-${VERSION}
+SOURCE=https://pypi.python.org/packages/source/s/setuptools/
+PACKING=.tar.gz
+BUILDCHAIN=python
--- /dev/null
+NAME=slepc-3.4.2
+SOURCE=http://www.fenicsproject.org/pub/software/contrib/
+PACKING=.tar.gz
+CHECKSUM=78ff6a709f50ccd765fa61589400d5f3
+BUILDCHAIN=custom
+
+package_specific_setup () {
+ cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* .
+ patch -p1 --forward < ${ORIG_DIR}/FEniCS/patches/slepc.patch || true
+ export SLEPC_DIR=${PWD}
+}
+
+package_specific_build () {
+ SLEPC_DIR=${PWD} ./configure --prefix=${INSTALL_PATH}
+ make PETSC_ARCH=arch-installed-petsc all
+ make PETSC_ARCH=arch-installed-petsc install
+}
+
+package_specific_register () {
+ export SLEPC_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=3070800
+NAME=sqlite-autoconf-${VERSION}
+SOURCE=http://www.sqlite.org/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+
+package_specific_build () {
+ ./configure --prefix=${INSTALL_PATH}
+ make -j ${PROCS}
+ make install
+}
--- /dev/null
+NAME=SuiteSparse-4.0.2
+SOURCE=http://www.cise.ufl.edu/research/sparse/SuiteSparse/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+EXTRACTSTO=SuiteSparse
+
+package_specific_build () {
+ mkdir -p ${INSTALL_PATH}/include/suitesparse
+ cat > SuiteSparse_config/SuiteSparse_config.mk << EOF
+#CF = \$(CFLAGS) \$(CPPFLAGS) \$(TARGET_ARCH) -O3 -fexceptions -fPIC
+CF = \$(CFLAGS) \$(CPPFLAGS) \$(TARGET_ARCH) -O3 -fexceptions -fPIC -DNTIMER
+RANLIB = ranlib
+ARCHIVE = \$(AR) \$(ARFLAGS)
+CP = cp -f
+MV = mv -f
+F77 = gfortran
+F77FLAGS = \$(FFLAGS) -O
+F77LIB =
+#LIB = -lm -lrt
+LIB = -lm
+INSTALL_LIB = ${INSTALL_PATH}/lib
+INSTALL_INCLUDE = ${INSTALL_PATH}/include/suitesparse
+XERBLA =
+GPU_BLAS_PATH =
+GPU_CONFIG =
+UMFPACK_CONFIG =
+CHOLMOD_CONFIG = \$(GPU_CONFIG) -DNPARTITION
+SPQR_CONFIG =
+TBB =
+CLEAN = *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno
+EOF
+
+ if [ ! -z "${ATLAS_LIB_DIR}" ]; then
+ cat >> SuiteSparse_config/SuiteSparse_config.mk << EOF
+BLAS = -L${ATLAS_LIB_DIR} -lcblas -lf77blas -latlas
+LAPACK = -L${ATLAS_LIB_DIR} -llapack
+EOF
+ else
+ cat >> SuiteSparse_config/SuiteSparse_config.mk << EOF
+BLAS = -lblas -lgfortran
+LAPACK = -llapack
+EOF
+ fi
+
+ make
+}
+
+package_specific_install () {
+ make install
+}
+
+package_specific_register () {
+ export UMFPACK_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=SuiteSparse
+SOURCE=http://www.cise.ufl.edu/research/sparse/SuiteSparse/current/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+
+package_specific_build () {
+ perl -pi -e 's/^CFLAGS = -O/CFLAGS = -fPIC -O/g' UFconfig/UFconfig.mk
+ perl -pi -e 's/-lgfortran.*n//g' UFconfig/UFconfig.mk
+ perl -pi -e 's/-lg2c//g' UFconfig/UFconfig.mk
+ if [ ! -e metis-4.0.3.tar.gz ]
+ then
+ wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-4.0.3.tar.gz
+ fi
+ tar -xzf metis-4.0.3.tar.gz
+ ln -sf metis-4.0.3 metis-4.0
+ cd metis-4.0
+ perl -pi -e 's/COPTIONS =/COPTIONS = -fPIC/g' Makefile.in
+ make
+ cd ..
+ make
+}
+
+package_specific_install () {
+ mkdir -p ${INSTALL_PATH}/include/suitesparse
+ ln -sf `find ${PWD} -name '*.h' | grep -vi demo | xargs` ${INSTALL_PATH}/include/suitesparse
+ ln -sf `find ${PWD} -name 'lib*.a' | xargs` ${INSTALL_PATH}/lib
+}
+
+package_specific_register () {
+ export UMFPACK_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=3.4.0
+NAME=SuiteSparse-${VERSION}
+SOURCE=http://www.cise.ufl.edu/research/sparse/SuiteSparse/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+EXTRACTSTO=SuiteSparse
+
+package_specific_build () {
+ sed -i 's/CFLAGS = -O/CFLAGS = -fPIC -O/g' UFconfig/UFconfig.mk
+ sed -i 's/CC = cc/CC = mpicc/g' UFconfig/UFconfig.mk
+ sed -i 's/CPLUSPLUS = g++/CPLUSPLUS = mpiCC/g' UFconfig/UFconfig.mk
+ sed -i 's/F77 = f77/F77 = mpif90/g' UFconfig/UFconfig.mk
+ sed -i 's/-lg2c//g' UFconfig/UFconfig.mk
+ sed -i 's,-lblas,-L${INSTALL_PATH}/lib/ -lblas,g' UFconfig/UFconfig.mk
+ sed -i 's,begin,,g' UFconfig/UFconfig.mk
+ sed -i 's,-llapack,-L${INSTALL_PATH}/lib/ -llapack,g' UFconfig/UFconfig.mk
+ sed -i 's,XERBLA =,# XERBLA =,g' UFconfig/UFconfig.mk
+ sed -i 's,# # XERBLA = ../../UFconfig/xerbla/libxerbla.a, XERBLA = ../../UFconfig/xerbla/libxerbla.a,' UFconfig/UFconfig.mk
+ sed -i 's,-fexceptions, -fexceptions,g' UFconfig/UFconfig.mk
+
+ if [ ! -e metis-4.0.3.tar.gz ]
+ then
+ wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-4.0.3.tar.gz
+ fi
+ tar -xzf metis-4.0.3.tar.gz
+ ln -sf metis-4.0.3 metis-4.0
+ cd metis-4.0
+ perl -pi -e 's/COPTIONS =/COPTIONS = -fPIC/g' Makefile
+ make -j
+ cd ..
+ cd UFconfig/xerbla/
+ make all
+ cd ../../
+ make
+}
+
+package_specific_install () {
+ mkdir -p ${INSTALL_PATH}/include/suitesparse
+ ln -sf `find ${PWD} -name '*.h' | grep -vi demo | xargs` ${INSTALL_PATH}/include/suitesparse
+ ln -sf `find ${PWD} -name 'lib*.a' | xargs` ${INSTALL_PATH}/lib
+}
+
+package_specific_register () {
+ export UMFPACK_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=swig-2.0.3
+SOURCE=http://downloads.sourceforge.net/swig/
+PACKING=.tar.gz
+CHECKSUM=e548ea3882b994c4907d6be86bef90f2
+BUILDCHAIN=autotools
+
+package_specific_setup () {
+ if [ ! -z ${SWIG_CC} ]; then
+ export TMP_SWIG_CC=${CC}
+ export CC=${SWIG_CC}
+ fi
+ if [ ! -z ${SWIG_CXX} ]; then
+ export TMP_SWIG_CXX=${CXX}
+ export CXX=${SWIG_CXX}
+ fi
+}
+
+package_specific_register () {
+ if [ ! -z ${TMP_SWIG_CC} ]; then
+ export CC=${TMP_SWIG_CC}
+ fi
+ if [ ! -z ${TMP_SWIG_CXX} ]; then
+ export CXX=${TMP_SWIG_CXX}
+ fi
+ export SWIG_EXECUTABLE=${INSTALL_PATH}/bin/swig
+}
--- /dev/null
+NAME=swiginac-1.5.1.1
+SOURCE=http://download.berlios.de/swiginac/
+PACKING=.tgz
+BUILDCHAIN=python
+
+package_specific_setup () {
+python setup.py build
+}
--- /dev/null
+VERSION=snapshot
+NAME=syfi-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/syfi/
+PACKING=.tar.gz
--- /dev/null
+VERSION=1.0.0
+NAME=syfi-${VERSION}
+SOURCE=http://launchpad.net/fenics-syfi/1.0.x/${VERSION}/+download/
+PACKING=.tar.gz
--- /dev/null
+NAME=fenics-syfi
+SOURCE=lp:
+PACKING=bzr
+BUILDCHAIN=cmake
+
+if [ -x "${SWIG_EXECUTABLE}" ]; then
+ CONFOPTS="-D SWIG_EXECUTABLE:FILEPATH=${SWIG_EXECUTABLE}"
+fi
--- /dev/null
+NAME=sympy-0.7.1
+SOURCE=http://pypi.python.org/packages/source/s/sympy/
+PACKING=.tar.gz
+BUILDCHAIN=python
--- /dev/null
+NAME=foo-x.y.z
+SOURCE=http://foo.org/downloads/foo/
+PACKING=[.tar.gz|.tar.bz2|.tbz2|.tgz|.zip|hg|svn|git|bzr]
+BUILDCHAIN=[autotools|python|scons|cmake|custom]
+EXTRACTSTO=barnotfoo
+CONFOPTS=""
+SCONSOPTS=""
+TARGETS=('' install)
+
+package_specific_setup () {
+ # Any non-standard configuration and pre-build instructions go
+ # here.
+}
+
+package_specific_build () {
+ # Any custom build instructions go here. This function is only
+ # used if the 'custom' buildchain is defined.
+}
+
+package_specific_install () {
+ # Any non-standard installation and post-build instructions go
+ # here.
+}
+
+package_specific_register () {
+ # Any environment variables defined by this package that are
+ # required by other packages go here.
+}
--- /dev/null
+VERSION=11.8.1
+NAME=trilinos-${VERSION}-Source
+SOURCE=http://trilinos.sandia.gov/download/files/
+PACKING=.tar.gz
+CHECKSUM=3c9465b6d63d824e9dc0365ca73c3370
+BUILDCHAIN=custom
+
+package_specific_setup () {
+echo "Build ${NAME}"
+
+CONFOPTS="-D Trilinos_ENABLE_OpenMP:BOOL=OFF \
+ -D TPL_ENABLE_TBB:BOOL=OFF \
+ -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON \
+ -D Trilinos_ENABLE_Epetra:BOOL=ON \
+ -D Trilinos_ENABLE_ML:BOOL=ON \
+ -D Trilinos_ENABLE_PyTrilinos:BOOL=ON \
+ -D Trilinos_ENABLE_TESTS:BOOL=OFF \
+ -D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
+ -D Trilinos_ENABLE_Didasko:BOOL=ON \
+ -D Trilinos_ENABLE_Sacado:BOOL=ON \
+ -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
+ -D CMAKE_BUILD_TYPE:STRING=RELEASE \
+ -D CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE \
+ -D Trilinos_VERBOSE_CONFIGURE:BOOL=FALSE \
+ -D TPL_ENABLE_MPI:BOOL=ON \
+ -D TPL_ENABLE_UMFPACK:BOOL=ON \
+ -D CMAKE_INSTALL_PREFIX:PATH=${INSTALL_PATH} \
+ -D BUILD_SHARED_LIBS:BOOL=ON"
+
+GFORTRAN_EXECUTABLE=$(which gfortran)
+if [ ! -z "${GFORTRAN_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -D Trilinos_ENABLE_Fortran:BOOL=ON
+ -D CMAKE_Fortran_COMPILER:FILEPATH=mpif90"
+else
+ CONFOPTS="${CONFOPTS} -D Trilinos_ENABLE_Fortran:BOOL=OFF"
+fi
+
+if [ ! -z "${ATLAS_LIB_DIR}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -D BLAS_LIBRARY_NAMES=\"cblas;f77blas;atlas\"
+ -D BLAS_LIBRARY_DIRS=${ATLAS_LIB_DIR}
+ -D LAPACK_LIBRARY_DIRS=${ATLAS_LIB_DIR}"
+fi
+
+if [ ! -z "${UMFPACK_DIR}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -D UMFPACK_INCLUDE_DIRS=${UMFPACK_DIR}/include/suitesparse
+ -D UMFPACK_LIBRARY_DIRS=${UMFPACK_DIR}/lib
+ -D UMFPACK_LIBRARY_NAMES=\"umfpack;cholmod;camd;ccolamd;colamd;amd;suitesparseconfig\""
+elif [ ! -z "${UMFPACK_INCLUDE_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} -D UMFPACK_INCLUDE_DIRS=${UMFPACK_INCLUDE_DIR}"
+fi
+
+if [ -x "${SWIG_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS} -D SWIG_EXECUTABLE:FILEPATH=${SWIG_EXECUTABLE}"
+fi
+
+if [ ! -z "${PYTHON_INCLUDE_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_INCLUDE_DIR:PATH=${PYTHON_INCLUDE_DIR}"
+fi
+
+if [ ! -z "${PYTHON_LIBRARY}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_LIBRARY:PATH=${PYTHON_LIBRARY}"
+fi
+
+
+TRILINOS_SOURCE="${UNPACK_PATH}/${EXTRACTSTO}"
+
+# configure
+cmake ${CONFOPTS} ${TRILINOS_SOURCE}
+
+# make
+make -j${PROCS}
+make install
+}
+
+package_specific_register () {
+ export TRILINOS_DIR=${INSTALL_PATH}
+}
--- /dev/null
+NAME=trilinos-10.10.2-Source
+SOURCE=http://trilinos.sandia.gov/download/files/
+PACKING=.tar.gz
+BUILDCHAIN=cmake
+
+MKLINCLUDE="/soft/intel/mkl/10.3.6.233/composer_xe_2011_sp1.6.233/mkl/include"
+COMPILERFLAGS="'-fPIC -DMPICH_IGNORE_CXX_SEEK -m64 -DMKL_ILP64 -lpthread'"
+MKLLIBS="\"-lmkl_rt\""
+
+CONFOPTS="-D CMAKE_CXX_COMPILER:FILEPATH='mpicxx'
+ -D CMAKE_C_COMPILER:FILEPATH='mpicc'
+ -D Trilinos_INSTALL_INCLUDE_DIR:PATH=include/trilinos
+ -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON
+ -D Trilinos_ENABLE_PyTrilinos:BOOL=ON
+ -D Trilinos_ENABLE_Fortran:BOOL=OFF
+ -D Trilinos_ENABLE_TESTS:BOOL=ON
+ -D Trilinos_ENABLE_EXAMPLES:BOOL=OFF
+ -D CMAKE_BUILD_TYPE:STRING=Release
+ -D BUILD_SHARED_LIBS:BOOL=ON
+ -D TPL_ENABLE_MPI:BOOL=ON
+ -D CMAKE_CXX_FLAGS:STRING=${COMPILERFLAGS}
+ -D CMAKE_C_FLAGS:STRING=${COMPILERFLAGS}
+ -D CMAKE_SKIP_BUILD_RPATH:BOOL=ON
+ -D CMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=OFF
+ -D BLAS_INCLUDE_DIRS:PATH=${MKLINCLUDE}
+ -D LAPCK_INCLUDE_DIRS:PATH=${MKLINCLUDE}
+ -D TPL_BLAS_LIBRARIES:STRING=${MKLLIBS}
+ -D TPL_LAPACK_LIBRARIES:STRING=${MKLLIBS}"
+
+if [ -x "${SWIG_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS} -D SWIG_EXECUTABLE:FILEPATH=${SWIG_EXECUTABLE}"
+fi
+
+package_specific_register () {
+ export TRILINOS_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=snapshot
+NAME=ufc-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/ufc/
+PACKING=.tar.gz
--- /dev/null
+VERSION=2.3.0
+NAME=ufc-${VERSION}
+SOURCE=https://bitbucket.org/fenics-project/ufc-deprecated/downloads/
+PACKING=.tar.gz
+CHECKSUM=11ee6ff8b7b44705932c6ebc6ae265d3
+BUILDCHAIN=cmake
--- /dev/null
+NAME=ufc-deprecated
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=nothing
+
+if [ -x "${SWIG_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS} -D SWIG_EXECUTABLE:FILEPATH=${SWIG_EXECUTABLE}"
+fi
+
+if [ ! -z "${PYTHON_EXECUTABLE}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_EXECUTABLE:FILEPATH=${PYTHON_EXECUTABLE}"
+fi
+
+if [ ! -z "${PYTHON_INCLUDE_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_INCLUDE_DIR:PATH=${PYTHON_INCLUDE_DIR}"
+fi
+
+if [ ! -z "${PYTHON_LIBRARY}" ]; then
+ CONFOPTS="${CONFOPTS} -D PYTHON_LIBRARY:PATH=${PYTHON_LIBRARY}"
+fi
--- /dev/null
+VERSION=snapshot
+NAME=ufl-${VERSION}
+SOURCE=http://fenicsproject.org/pub/software/ufl/
+PACKING=.tar.gz
--- /dev/null
+VERSION=1.3.0
+NAME=ufl-${VERSION}
+SOURCE=https://bitbucket.org/fenics-project/ufl/downloads/
+PACKING=.tar.gz
+CHECKSUM=c57de98161c10bbbc0339ef2d1a4749d
--- /dev/null
+NAME=ufl
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=python
--- /dev/null
+NAME=uflacs
+SOURCE=https://bitbucket.org/fenics-project/
+PACKING=git
+BUILDCHAIN=python
--- /dev/null
+VERSION=1.0.0
+NAME=viper-${VERSION}
+SOURCE=http://launchpad.net/fenics-viper/1.0.x/${VERSION}/+download/
+PACKING=.tar.gz
+CHECKSUM=4aa7d37934c98e637b45eb9cc7d03cdd
--- /dev/null
+NAME=fenics-viper
+SOURCE=lp:
+PACKING=bzr
+BUILDCHAIN=python
--- /dev/null
+NAME=vtk-5.10.1
+SOURCE=http://www.vtk.org/files/release/5.10/
+PACKING=.tar.gz
+BUILDCHAIN=cmake
+EXTRACTSTO=VTK5.10.1
+
+CONFOPTS="-D CMAKE_BUILD_TYPE:STRING=Release
+ -D BUILD_TESTING:BOOL=OFF
+ -D BUILD_SHARED_LIBS:BOOL=ON
+ -D VTK_WRAP_PYTHON:BOOL=ON
+ -D VTK_USE_TK:BOOL=ON
+ -D VTK_USE_GL2PS:BOOL=ON
+ -D VTK_USE_QT:BOOL=ON"
+
+if [ -d "${VTK_DATA_ROOT}" ]; then
+ CONFOPTS="${CONFOPTS} -D VTK_DATA_ROOT:PATH=${VTK_DATA_ROOT}"
+fi
+
+package_specific_setup () {
+# chmod 600 Utilities/vtktiff/tif_fax3sm.c
+}
+
+package_specific_register () {
+ export LD_LIBRARY_PATH=${INSTALL_PATH}/lib/vtk-5.8:${LD_LIBRARY_PATH}
+ export DYLD_LIBRARY_PATH=${INSTALL_PATH}/lib/vtk-5.8:${DYLD_LIBRARY_PATH}
+}
--- /dev/null
+NAME=vtkdata-5.10.1
+SOURCE=http://www.vtk.org/files/release/5.10/
+PACKING=.tar.gz
+BUILDCHAIN=custom
+EXTRACTSTO=VTKData5.10.1
+
+package_specific_register () {
+ export VTK_DATA_ROOT=${PWD}
+}
--- /dev/null
+NAME=vtk-5.10.1
+SOURCE=http://www.vtk.org/files/release/5.10/
+PACKING=.tar.gz
+BUILDCHAIN=cmake
+EXTRACTSTO=VTK5.10.1
+
+CONFOPTS="-D CMAKE_BUILD_TYPE:STRING=Release
+ -D BUILD_TESTING:BOOL=OFF
+ -D BUILD_SHARED_LIBS:BOOL=ON
+ -D VTK_WRAP_PYTHON:BOOL=ON
+ -D VTK_USE_TK:BOOL=ON
+ -D VTK_USE_GL2PS:BOOL=ON
+ -D VTK_USE_QT=ON"
+
+if [ -d "${VTK_DATA_ROOT}" ]; then
+ CONFOPTS="${CONFOPTS} -D VTK_DATA_ROOT:PATH=${VTK_DATA_ROOT}"
+fi
+
+package_specific_setup () {
+# chmod 600 Utilities/vtktiff/tif_fax3sm.c
+}
+
+package_specific_register () {
+ export LD_LIBRARY_PATH=${INSTALL_PATH}/lib/vtk-5.8:${LD_LIBRARY_PATH}
+ export DYLD_LIBRARY_PATH=${INSTALL_PATH}/lib/vtk-5.8:${DYLD_LIBRARY_PATH}
+}
--- /dev/null
+NAME=zlib-1.2.7
+SOURCE=http://zlib.net/
+PACKING=.tar.gz
+BUILDCHAIN=autotools
--- /dev/null
+Hack to prevent Armadillo from picking up MKL when we want to build with ATLAS.
+--- armadillo-3.2.3.orig/CMakeLists.txt 2012-12-13 11:18:32.399393689 +0100
++++ armadillo-3.2.3/CMakeLists.txt 2012-12-13 11:18:43.595393294 +0100
+@@ -72,9 +72,9 @@
+ else()
+ set(ARMA_OS unix)
+
+- include(ARMA_FindMKL)
+- include(ARMA_FindACMLMP)
+- include(ARMA_FindACML)
++ #include(ARMA_FindMKL)
++ #include(ARMA_FindACMLMP)
++ #include(ARMA_FindACML)
+
+ message(STATUS "MKL_FOUND = ${MKL_FOUND}")
+ message(STATUS "ACMLMP_FOUND = ${ACMLMP_FOUND}")
--- /dev/null
+--- src/CGAL/KDS_Log.cpp~ 2009-07-24 13:41:31.000000000 +0100
++++ src/CGAL/KDS_Log.cpp 2010-01-20 17:38:15.000000000 +0000
+@@ -23,7 +23,7 @@
+ #include <CGAL/Kinetic/internal/debug_counters.h>
+ #include <iostream>
+ CGAL_BEGIN_NAMESPACE
+-Log::State Log::state_;
++// Log::State Log::state_;
+ CGAL_END_NAMESPACE
+ CGAL_KINETIC_BEGIN_INTERNAL_NAMESPACE
+
--- /dev/null
+diff -Nru dolfin-1.0-beta.orig/cmake/modules/FindArmadillo.cmake dolfin-1.0-beta/cmake/modules/FindArmadillo.cmake
+--- dolfin-1.0-beta.orig/cmake/modules/FindArmadillo.cmake 2011-09-23 11:17:38.459186000 -0500
++++ dolfin-1.0-beta/cmake/modules/FindArmadillo.cmake 2011-09-23 11:20:56.447560000 -0500
+@@ -173,6 +173,13 @@
+ endif()
+ endif()
+
++# Armadillo test is not working, but this does not seem to be a problem,
++# so ignore a failed test
++if (NOT ARMADILLO_TEST_RUNS)
++ MESSAGE( "Warning: Armadillo test run failed. Ignoring." )
++ set(ARMADILLO_TEST_RUNS TRUE)
++endif()
++
+ # Standard package handling
+ include(FindPackageHandleStandardArgs)
+ find_package_handle_standard_args(Armadillo
\ No newline at end of file
--- /dev/null
+diff -Nru madlib-1.3.0.orig/Benchmarks/moveIt/Parameters.h madlib-1.3.0/Benchmarks/moveIt/Parameters.h
+--- madlib-1.3.0.orig/Benchmarks/moveIt/Parameters.h 2010-11-12 15:00:57.000000000 +0100
++++ madlib-1.3.0/Benchmarks/moveIt/Parameters.h 2010-11-12 15:00:57.000000000 +0100
+@@ -18,6 +18,7 @@
+ #include "SizeFieldBase.h"
+ #include "LocalSizeField.h"
+
++#include <math.h>
+ #include <string.h>
+ using std::string;
+ #include <list>
+diff -Nru madlib-1.3.0.orig/configure madlib-1.3.0/configure
+--- madlib-1.3.0.orig/configure 2010-11-12 15:00:57.000000000 +0100
++++ madlib-1.3.0/configure 2010-11-17 15:58:05.000000000 +0100
+@@ -18697,7 +18697,7 @@
+
+
+ includedir="${prefix}/include/MAdLib"
+-allincludedir="${prefix}/include_all/MAdLib"
++allincludedir="${prefix}/include/MAdLib"
+
+
+
+diff -Nru madlib-1.3.0.orig/configure.ac madlib-1.3.0/configure.ac
+--- madlib-1.3.0.orig/configure.ac 2010-11-12 15:00:57.000000000 +0100
++++ madlib-1.3.0/configure.ac 2010-11-17 15:58:14.000000000 +0100
+@@ -724,7 +724,7 @@
+ AC_CONFIG_MACRO_DIR([m4])
+
+ includedir="${prefix}/include/MAdLib"
+-allincludedir="${prefix}/include_all/MAdLib"
++allincludedir="${prefix}/include/MAdLib"
+
+ dnl Write output
+ AC_SUBST(UNAME)
+diff -Nru madlib-1.3.0.orig/Mesh/MshTags.h madlib-1.3.0/Mesh/MshTags.h
+--- madlib-1.3.0.orig/Mesh/MshTags.h 2010-11-12 15:00:57.000000000 +0100
++++ madlib-1.3.0/Mesh/MshTags.h 2010-11-12 15:00:57.000000000 +0100
+@@ -14,6 +14,7 @@
+ #ifndef MSHTAGS__H
+ #define MSHTAGS__H
+
++#include <cstdio>
+ #include <string>
+ #include <sstream>
+
--- /dev/null
+diff -Nru petsc-3.2-p6.orig/src/mat/impls/aij//mpi/mpicusp/mpiaijAssemble.cu petsc-3.2-p6/src/mat/impls/aij//mpi/mpicusp/mpiaijAssemble.cu
+--- petsc-3.2-p6.orig/src/mat/impls/aij//mpi/mpicusp/mpiaijAssemble.cu 2012-02-09 14:29:16.530465405 +0100
++++ petsc-3.2-p6/src/mat/impls/aij//mpi/mpicusp/mpiaijAssemble.cu 2012-02-09 14:51:53.720465807 +0100
+@@ -15,7 +15,7 @@
+ #include <cusp/array1d.h>
+ #include <cusp/print.h>
+ #include <cusp/coo_matrix.h>
+-#include <cusp/detail/device/reduce_by_key.h>
++//#include <cusp/detail/device/reduce_by_key.h>
+
+ #include <cusp/io/matrix_market.h>
+
+@@ -430,7 +430,8 @@
+ // the Cusp one is 2x faster, but still not optimal
+ // This could possibly be done in-place
+ ierr = PetscInfo(J, "Compressing matrices\n");CHKERRQ(ierr);
+- cusp::detail::device::reduce_by_key
++ //cusp::detail::device::reduce_by_key
++ thrust::reduce_by_key
+ (thrust::make_zip_iterator(thrust::make_tuple(diagCOO.row_indices.begin(), diagCOO.column_indices.begin())) + diagonalOffset,
+ thrust::make_zip_iterator(thrust::make_tuple(diagCOO.row_indices.end(), diagCOO.column_indices.end())),
+ diagCOO.values.begin() + diagonalOffset,
+@@ -438,7 +439,8 @@
+ A.values.begin(),
+ thrust::equal_to< thrust::tuple<IndexType,IndexType> >(),
+ thrust::plus<ValueType>());
+- cusp::detail::device::reduce_by_key
++ //cusp::detail::device::reduce_by_key
++ thrust::reduce_by_key
+ (thrust::make_zip_iterator(thrust::make_tuple(offdiagCOO.row_indices.begin(), offdiagCOO.column_indices.begin())) + offdiagonalOffset,
+ thrust::make_zip_iterator(thrust::make_tuple(offdiagCOO.row_indices.end(), offdiagCOO.column_indices.end())),
+ offdiagCOO.values.begin() + offdiagonalOffset,
+diff -Nru petsc-3.2-p6.orig/src/mat/impls/aij//seq/seqcusp/aijAssemble.cu petsc-3.2-p6/src/mat/impls/aij//seq/seqcusp/aijAssemble.cu
+--- petsc-3.2-p6.orig/src/mat/impls/aij//seq/seqcusp/aijAssemble.cu 2012-02-09 14:30:01.830465419 +0100
++++ petsc-3.2-p6/src/mat/impls/aij//seq/seqcusp/aijAssemble.cu 2012-02-09 14:51:55.470465809 +0100
+@@ -14,7 +14,7 @@
+ #include <cusp/array1d.h>
+ #include <cusp/print.h>
+ #include <cusp/coo_matrix.h>
+-#include <cusp/detail/device/reduce_by_key.h>
++//#include <cusp/detail/device/reduce_by_key.h>
+
+ #include <cusp/io/matrix_market.h>
+
+@@ -258,9 +258,10 @@
+ // sum values with the same (i,j) index
+ // XXX thrust::reduce_by_key is unoptimized right now, so we provide a SpMV-based one in cusp::detail
+ // the Cusp one is 2x faster, but still not optimal
++ // FEniCS patch: reduce_by_key is removed in Cusp 0.3, so we use the Thrust version to ensure compatiblity
+ // This could possibly be done in-place
+ ierr = PetscInfo(J, "Compressing matrix\n");CHKERRQ(ierr);
+-#if 1
++#if 0
+ cusp::detail::device::reduce_by_key
+ (thrust::make_zip_iterator(thrust::make_tuple(COO.row_indices.begin(), COO.column_indices.begin())),
+ thrust::make_zip_iterator(thrust::make_tuple(COO.row_indices.end(), COO.column_indices.end())),
--- /dev/null
+diff -Nru Python-2.7.2.orig/Makefile.pre.in Python-2.7.2/Makefile.pre.in
+--- Python-2.7.2.orig/Makefile.pre.in 2013-04-08 12:39:28.000000000 +0200
++++ Python-2.7.2/Makefile.pre.in 2013-04-08 12:40:25.000000000 +0200
+@@ -426,7 +426,7 @@
+ libpython$(VERSION).so: $(LIBRARY_OBJS)
+ if test $(INSTSONAME) != $(LDLIBRARY); then \
+ $(BLDSHARED) -Wl,-h$(INSTSONAME) -o $(INSTSONAME) $(LIBRARY_OBJS) $(MODLIBS) $(SHLIBS) $(LIBC) $(LIBM) $(LDLAST); \
+- $(LN) -f $(INSTSONAME) $@; \
++ $(LN) -fs $(INSTSONAME) $@; \
+ else \
+ $(BLDSHARED) -o $@ $(LIBRARY_OBJS) $(MODLIBS) $(SHLIBS) $(LIBC) $(LIBM) $(LDLAST); \
+ fi
+@@ -792,7 +792,7 @@
+ then rm -f $(DESTDIR)$(BINDIR)/$(PYTHON); \
+ else true; \
+ fi
+- (cd $(DESTDIR)$(BINDIR); $(LN) python$(VERSION)$(EXE) $(PYTHON))
++ (cd $(DESTDIR)$(BINDIR); $(LN) -s python$(VERSION)$(EXE) $(PYTHON))
+ -rm -f $(DESTDIR)$(BINDIR)/python-config
+ (cd $(DESTDIR)$(BINDIR); $(LN) -s python$(VERSION)-config python-config)
+ -test -d $(DESTDIR)$(LIBPC) || $(INSTALL) -d -m $(DIRMODE) $(DESTDIR)$(LIBPC)
--- /dev/null
+diff -Nru ScientificPython-2.8.orig/setup.py ScientificPython-2.8/setup.py
+--- ScientificPython-2.8.orig/setup.py 2008-10-28 14:31:44.000000000 +0100
++++ ScientificPython-2.8/setup.py 2010-08-20 09:29:16.000000000 +0200
+@@ -40,13 +40,17 @@
+ extra_compile_args.append("-DNUMARRAY=1")
+ else :
+ extra_compile_args.append("-DNUMPY=1")
+- if sys.platform == 'win32':
+- arrayobject_h_include = [os.path.join(sys.prefix,
+- "Lib/site-packages/numpy/core/include")]
+- else:
+- arrayobject_h_include = [os.path.join(sys.prefix,
+- "lib/python%s.%s/site-packages/numpy/core/include"
+- % sys.version_info [:2])]
++ try:
++ import numpy
++ arrayobject_h_include = [numpy.get_include()]
++ except ImportError:
++ if sys.platform == 'win32':
++ arrayobject_h_include = [os.path.join(sys.prefix,
++ "Lib/site-packages/numpy/core/include")]
++ else:
++ arrayobject_h_include = [os.path.join(sys.prefix,
++ "lib/python%s.%s/site-packages/numpy/core/include"
++ % sys.version_info [:2])]
+
+ math_libraries = []
+ if sys.platform != 'win32':
--- /dev/null
+diff -Nru slepc-3.4.1.orig/config/configure.py slepc-3.4.1/config/configure.py
+--- slepc-3.4.1.orig/config/configure.py 2013-08-14 10:14:04.157596562 +0200
++++ slepc-3.4.1/config/configure.py 2013-08-14 10:14:37.341561962 +0200
+@@ -297,8 +297,8 @@
+ pkgconfig = open(os.sep.join([pkgconfigdir,'SLEPc.pc']),'w')
+ except:
+ sys.exit('ERROR: cannot create pkgconfig file in ' + pkgconfigdir)
+-if prefixinstall and os.path.isfile(os.sep.join([prefixdir,'include','slepc.h'])):
+- sys.exit('ERROR: prefix directory ' + prefixdir + ' contains files from a previous installation')
++#if prefixinstall and os.path.isfile(os.sep.join([prefixdir,'include','slepc.h'])):
++# sys.exit('ERROR: prefix directory ' + prefixdir + ' contains files from a previous installation')
+
+ # Create temporary directory and makefile for running tests
+ try:
--- /dev/null
+diff -Nru trilinos-11.0.3-Source.orig/cmake/TPLs/FindTPLUMFPACK.cmake trilinos-11.0.3-Source/cmake/TPLs/FindTPLUMFPACK.cmake
+--- trilinos-11.0.3-Source.orig/cmake/TPLs/FindTPLUMFPACK.cmake 2012-11-21 10:00:57.966984315 +0100
++++ trilinos-11.0.3-Source/cmake/TPLs/FindTPLUMFPACK.cmake 2012-11-21 10:08:21.946968616 +0100
+@@ -55,7 +55,14 @@
+
+ INCLUDE(TribitsTplDeclareLibraries)
+
+-TRIBITS_TPL_DECLARE_LIBRARIES( UMFPACK
+- REQUIRED_HEADERS umfpack.h amd.h UFconfig.h
+- REQUIRED_LIBS_NAMES umfpack amd
+- )
++IF (APPLE)
++ TRIBITS_TPL_DECLARE_LIBRARIES( UMFPACK
++ REQUIRED_HEADERS umfpack.h amd.h UFconfig.h
++ REQUIRED_LIBS_NAMES umfpack amd SuiteSparse
++ )
++ELSE()
++ TRIBITS_TPL_DECLARE_LIBRARIES( UMFPACK
++ REQUIRED_HEADERS umfpack.h amd.h UFconfig.h
++ REQUIRED_LIBS_NAMES umfpack amd
++ )
++ENDIF()
+diff -Nru trilinos-11.0.3-Source.orig/packages/PyTrilinos/src/CMakeLists.txt trilinos-11.0.3-Source/packages/PyTrilinos/src/CMakeLists.txt
+--- trilinos-11.0.3-Source.orig/packages/PyTrilinos/src/CMakeLists.txt 2012-11-21 10:00:58.226984311 +0100
++++ trilinos-11.0.3-Source/packages/PyTrilinos/src/CMakeLists.txt 2012-11-21 10:09:24.498966402 +0100
+@@ -195,6 +195,10 @@
+ PROPERTIES LINK_FLAGS "${EXTRA_LINK_ARGS}"
+ )
+
++if (APPLE)
++ TARGET_LINK_LIBRARIES(pytrilinos ${PYTHON_LIBRARIES})
++endif()
++
+ #
+ # Define the PyTrilinos swig setup
+ SET(CMAKE_SWIG_FLAGS "")
--- /dev/null
+# Fedora 19
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y redhat-lsb bzr bzrtools subversion \
+# libxml2-devel gcc gcc-c++ openmpi-devel openmpi numpy swig wget \
+# atlas-devel suitesparse-devel blas-devel \
+# lapack-devel cln-devel ginac-devel python-devel cmake \
+# ScientificPython mpfr-devel armadillo-devel gmp-devel CGAL-devel \
+# cppunit-devel flex bison bzip2-devel python-ply eigen3 scotch scotch-devel \
+# vtk vtkdata vtk-devel vtk-python tk tk-devel tcl tcl-devel \
+# sphinx python-sphinx python-numpydoc'
+#
+# If you have multiple MPI libraries installed, make sure the
+# appropriate version is selected. For this, on a 32-bit operating
+# system, run:
+#
+# module load openmpi-i386
+#
+# or on a 64-bit operating system, run:
+#
+# module load openmpi-x86_64
+#
+# After Dorsal has completed, please make sure the following
+# environment variable is set before running any Python DOLFIN
+# programs:
+#
+# export BOOST_DIR=${INSTALL_PATH}
+#
+# Also, if you are using SELinux, you may need to disable it to run
+# DOLFIN programs.
+##
+
+# Platform specific variables
+default PETSC_ARCH=linux-gnu-cxx-opt
+default SCOTCH_ARCH=pc_linux2
+default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse
+
+# Define the packages this platform needs
+PACKAGES=(
+skip:FEniCS-prepare
+once:hdf5
+once:boost
+once:parmetis
+once:trilinos
+once:petsc
+once:slepc
+once:vtkwithqt
+# swiginac
+# once:scotch
+fiat
+ferari
+ufc
+ufl
+ffc
+# syfi
+viper
+instant
+dolfin
+skip:FEniCS
+)
--- /dev/null
+# Fedora 20
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y redhat-lsb bzr bzrtools subversion \
+# libxml2-devel gcc gcc-c++ openmpi-devel openmpi numpy swig wget \
+# atlas-devel suitesparse-devel blas-devel \
+# lapack-devel cln-devel ginac-devel python-devel cmake \
+# ScientificPython mpfr-devel armadillo-devel gmp-devel CGAL-devel \
+# cppunit-devel flex bison bzip2-devel python-ply eigen3 scotch scotch-devel \
+# vtk vtkdata vtk-devel vtk-python tk tk-devel tcl tcl-devel \
+# sphinx python-sphinx python-numpydoc'
+#
+# If you have multiple MPI libraries installed, make sure the
+# appropriate version is selected. For this, on a 32-bit operating
+# system, run:
+#
+# module load openmpi-i386
+#
+# or on a 64-bit operating system, run:
+#
+# module load openmpi-x86_64
+#
+# After Dorsal has completed, please make sure the following
+# environment variable is set before running any Python DOLFIN
+# programs:
+#
+# export BOOST_DIR=${INSTALL_PATH}
+#
+# Also, if you are using SELinux, you may need to disable it to run
+# DOLFIN programs.
+##
+
+# Platform specific variables
+default PETSC_ARCH=linux-gnu-cxx-opt
+default SCOTCH_ARCH=pc_linux2
+default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse
+
+# Define the packages this platform needs
+PACKAGES=(
+skip:FEniCS-prepare
+#once:hdf5
+once:boost
+once:parmetis
+once:trilinos
+once:petsc
+once:slepc
+#once:sphinx
+# swiginac
+# once:scotch
+fiat
+ferari
+ufc
+ufl
+ffc
+# syfi
+viper
+instant
+dolfin
+skip:FEniCS
+)
--- /dev/null
+# RHEL 6
+
+# This build script assumes that you have several packages already
+# installed via RHEL's yum using the following command:
+#
+# su -c 'yum install -y redhat-lsb bzr bzrtools subversion \
+# libxml2-devel gcc gcc-c++ openmpi-devel openmpi numpy swig wget \
+# vtk-python atlas-devel suitesparse-devel blas-devel \
+# lapack-devel cln-devel ginac-devel python-devel cmake \
+# ScientificPython mpfr-devel armadillo-devel gmp-devel CGAL-devel \
+# cppunit-devel flex bison bzip2-devel python-ply eigen3 scotch scotch-devel'
+#
+# If you have multiple MPI libraries installed, make sure the
+# appropriate version is selected. For this, on a 32-bit operating
+# system, run:
+#
+# module load openmpi-i386
+#
+# or on a 64-bit operating system, run:
+#
+# module load openmpi-x86_64
+#
+# After Dorsal has completed, please make sure the following
+# environment variable is set before running any Python DOLFIN
+# programs:
+#
+# export BOOST_DIR=${INSTALL_PATH}
+#
+# Also, if you are using SELinux, you may need to disable it to run
+# DOLFIN programs.
+##
+
+# Platform specific variables
+default PETSC_ARCH=linux-gnu-cxx-opt
+default SCOTCH_ARCH=pc_linux2
+default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse
+
+# Define the packages this platform needs
+PACKAGES=(
+skip:FEniCS-prepare
+once:boost
+once:pcre
+once:scientificpython
+once:cgal
+once:bazaar
+once:scons
+once:mtl
+once:hdf5
+once:parmetis
+once:swig
+once:trilinos
+once:petsc
+once:slepc
+once:armadillo
+once:scotch
+fiat
+ferari
+ufc
+ufl
+ffc
+# syfi
+viper
+instant
+dolfin
+skip:FEniCS
+)
--- /dev/null
+# Ubuntu 13.10 (Saucy Salamander)
+
+# This build script assumes that you have several packages already
+# installed via Ubuntu's apt-get using the following commands:
+#
+# sudo apt-get install bzr bzrtools cmake flex g++ gfortran \
+# libarmadillo-dev libatlas-base-dev libboost-dev \
+# libboost-{filesystem,iostreams,mpi,program-options,thread,math,timer,chrono}-dev \
+# libcln-dev libcppunit-dev libginac-dev \
+# liblapack-dev libmpfr-dev libopenmpi-dev libptscotch-dev \
+# libsuitesparse-dev libxml2-dev openmpi-bin pkg-config \
+# python-dev python-numpy python-scientific python-vtk subversion swig \
+# wget bison libhwloc-dev python-ply libvtk5-dev python-netcdf \
+# libhdf5-openmpi-dev libeigen3-dev
+#
+# Also, if you have multiple MPI libraries installed, make sure
+# "sudo update-alternatives --config mpi" is set to openmpi.
+##
+
+# Platform specific variables
+default PETSC_ARCH=linux-gnu-cxx-opt
+default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse
+
+# Define the packages this platform needs
+PACKAGES=(
+skip:FEniCS-prepare
+cgal
+parmetis
+trilinos
+petsc
+slepc
+fiat
+#ferari
+ufc
+ufl
+ffc
+instant
+dolfin
+skip:FEniCS
+)
--- /dev/null
+Copyright (C) 2007 -- 2013
+Harish Narayanan (<hnarayanan@gmail.com>)
+
+Licensing information follows a little later in this file.
+
+# Dorsal
+
+This directory tree holds Dorsal, a set of simple scripts to build
+components of the FEniCS Project (as well as their dependencies) for
+various platforms. Currently, Dorsal supports the following
+environments:
+
+* Fedora 13, 14, 15
+* Ubuntu 12.04 LTS, 12.10, 13.04
+* openSUSE 11.3, 11.4, 12.1
+* Red Hat Enterprise Linux 6
+* Debian GNU/Linux 6.0, Unstable
+* Mac OS X 10.6, 10.7 (with MacPorts)
+
+If your favourite platform is not on the list above, let us know about
+it, and we can work together toward adding it.
+
+Please refer to the file USAGE for details on compiling and installing
+the FEniCS Project with the help of Dorsal. USAGE demonstrates how
+Dorsal comes in handy under common usage scenarios. The file also
+provides a brief overview of the underlying structure of Dorsal, so
+you may want to go through it if you are interested in extending
+Dorsal to suit your needs.
+
+If you run into any problems, ensure that you've installed all the
+preliminary dependencies for your platform (usually from the system
+package manager) that Dorsal assumes you already have. An incomplete
+list of this is provided in the .platform file for each platform,
+along with platform-specific tips. In most cases, these should solve
+your problem. If you're having further difficulty, please go through
+the file USAGE for detailed usage and troubleshooting instructions, or
+see http://fenicsproject.org/support for contact information.
+
+Dorsal is collaboratively developed free software. The file AUTHORS
+contains a complete list of authors and contributors to the project,
+and its evolution is catalogued in the file ChangeLog. You are free to
+redistribute Dorsal and/or modify it under the terms of the GNU Lesser
+General Public License as published by the Free Software Foundation;
+either version 3, or (at your option) any later version. If you are
+interested in contributing to the project, please take a look at the
+file TODO for some ideas.
+
+This software is distributed in the hope that it will be useful, but
+WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+Lesser General Public License for more details.
+
+You should have received a copy of the GNU Lesser General Public
+License along with this software; see the file COPYING.lesser. If not,
+write to the Free Software Foundation, 59 Temple Place - Suite 330,
+Boston, MA 02111-1307, USA.
--- /dev/null
+* Introduce automatic dependency resolution.
+ Difficulty: High Urgency: Low
+
+* Test Dorsal on supported platforms and correct the package lists if
+ necessary. Feel free to contribute information for other platforms
+ as well.
+ Difficulty: Low Urgency: High
+
+* Add (MD5/SHA1) check summing mechanism to the downloading routine
+ (and corresponding hashes to the package files) to verify if
+ downloaded files are sane.
+ Difficulty: Moderate Urgency: Moderate
+
+* Sniff out 32/64 bit-ness of machines automatically to suitably set
+ GMP_ARCH, SCOTCH_ARCH etc.
+ Difficulty: Moderate Urgency: High
+
+* Insert download links somewhere in the documentation.
+ Difficulty: Trivial Urgency: Moderate
+
+* Introduce mechanism to update package lists.
+ Difficulty: Moderate Urgency: Low
+
+* Add the ability to "clean" a build. This could be as simple as
+ cleaning the dorsal_build folder, or something more complex.
+ Difficulty: Moderate Urgency: Low
--- /dev/null
+Using, troubleshooting and extending Dorsal
+
+ This document contains instructions for compiling and installing the
+ FEniCS Project with the help of Dorsal. It contains the following
+ sections, which catalogue common use cases, provide information on
+ troubleshooting common problems, and present a brief look at the
+ design of Dorsal, should you want to extend it.
+
+ Basic usage
+ Repeated builds
+ Coexisting stable and development builds
+ Mixed stable and development builds
+ Troubleshooting and getting help
+ Elements of Dorsal's design
+
+
+ Basic usage
+
+ The simplest scenario is setting up everything for the first time on
+ a supported platform. In order to do this, you:
+
+ 1. First tweak dorsal.cfg to your liking. This file lets you
+ specify some key information to Dorsal, including where you'd
+ like to download and install the FEniCS Project components, and
+ whether you'd like to install stable releases or (potentially
+ unstable) development versions of projects.
+
+ 2. Invoke the build script by running:
+
+ ./dorsal.sh
+
+ 3. At this point, Dorsal attempts to guess your operating
+ environment (platform) and provides a list of instructions to
+ ensure your system is ready for installing FEniCS. Go through
+ these carefully, and copy and paste appropriate commands into
+ another terminal window to prepare your system.
+
+ If Dorsal fails to recognise your platform, or you want to
+ specify a known platform you are interested in (myplatform),
+ invoke Dorsal via:
+
+ ./dorsal.sh FEniCS/platforms/supported/myplatform.platform
+
+ 4. Once you've completed these steps, hit enter to begin the
+ installation!
+
+ If all goes according to plan, you should see a lot of
+ compilation-related text scroll past your screen and eventually end
+ up with a complete, up-to-date installation of various FEniCS
+ projects and their corresponding dependencies.
+
+ Don't forget to follow any post-build instructions before rushing
+ off to try the demos!
+
+
+ Repeated builds
+
+ The FEniCS Project is under active development. If you are
+ interested in keeping up with the development versions of its
+ components, you will want to frequently rerun dorsal.sh (with
+ STABLE_BUILD set to false in dorsal.cfg).
+
+ Unfortunately, Dorsal is not currently smart enough to automatically
+ figure out what it has previously installed. It will insist on
+ rebuilding all projects and their dependencies, even though you are
+ probably only interested in tracking a few fast-changing FEniCS
+ Project components.
+
+ In order to get around this limitation, Dorsal has a package
+ skipping mechanism which you can use to manually specify packages
+ you would like it to skip on subsequent rebuilds. The following
+ steps describe how you use this mechanism to rebuild just the
+ projects you want to track.
+
+ 1. Ensure that STABLE_BUILD set to false in dorsal.cfg. This makes
+ sure Dorsal knows to fetch and build development versions of
+ projects.
+
+ 2. Create a new copy of your system's platform file
+ (system.platform) in the platforms folder. Call it, say,
+ myplatform.platform.
+
+ cd FEniCS/platforms/supported
+ cp system.platform myplatform.platform
+
+ 3. Open myplatform.platform in your favourite text editor, and
+ prepend the string `skip:' (without the quotes) before every
+ package on the list PACKAGES you would like Dorsal to skip on
+ subsequent builds. So now, your list might look something like
+ the following:
+
+ PACKAGES=(
+ skip:parmetis
+ skip:petsc
+ skip:slepc
+ skip:gmp
+ skip:mtl
+ skip:trilinos
+ skip:scotch
+ fiat
+ ferari
+ ufc
+ ufl
+ ffc
+ viper
+ instant
+ dolfin
+ )
+
+ See the file fenics.platform for an example of what I use on my
+ (Mac OS X Snow Leopard) machine. Notice that this file is
+ identical to snowleopard.platform, with a few packages 'skip:'ped.
+
+ 4. Now, every time you wish to rebuild just the few packages you
+ want to track, invoke Dorsal via:
+
+ ./dorsal.sh FEniCS/platforms/supported/myplatform.platform
+
+ Using Dorsal in this manner should save you a lot of time if you
+ need to rebuild FEniCS often.
+
+
+ Coexisting stable and development builds
+
+ Another common requirement is tracking both stable releases (to get
+ actual work done!) and development versions (to check out and
+ contribute to new functionality) of FEniCS Project components.
+
+ In order to achieve this, you:
+
+ 1. Modify the variables in dorsal.cfg to build stable releases of
+ FEniCS Project components and install them in some convenient
+ location. e.g.,
+
+ DOWNLOAD_PATH=${HOME}/Work/FEniCS/stable/src
+ INSTALL_PATH=${HOME}/Work/FEniCS/stable
+ STABLE_BUILD=true
+
+ 2. Invoke the build script by running:
+
+ ./dorsal.sh
+
+ 3. Modify the variables in dorsal.cfg to build development versions
+ of FEniCS Project components and install them in another
+ location. e.g.,
+
+ DOWNLOAD_PATH=${HOME}/Work/FEniCS/unstable/src
+ INSTALL_PATH=${HOME}/Work/FEniCS/unstable
+ STABLE_BUILD=false
+
+ 4. Invoke the build script once more by running:
+
+ ./dorsal.sh
+
+
+ Mixed stable and development builds
+
+ A final use case is tracking an arbitrary mix of stable releases and
+ development versions of FEniCS Project components. It is sometimes
+ necessary to do this when you want to follow bleeding edge versions
+ of some FEniCS projects, but some others are simultaneously broken.
+
+ In order to achieve this, you:
+
+ 1. Ensure STABLE_BUILD=false in dorsal.cfg to make sure Dorsal
+ knows to go and fetch development versions of packages by
+ default.
+
+ 2. Create a new copy of your system's platform file
+ (system.platform) in the platforms folder. Call it, say,
+ myplatform.platform.
+
+ cd platforms
+ cp system.platform myplatform.platform
+
+ 3. Open myplatform.platform in your favourite text editor, and
+ append the string `-stable' to all the packages you want stable
+ versions of. So now, your list might look something like the
+ following:
+
+ PACKAGES=(
+ ...
+ fiat
+ ferari
+ ufc-stable
+ ufl
+ ffc-stable
+ viper
+ instant
+ dolfin
+ )
+
+ 4. Now, invoke Dorsal via:
+
+ ./dorsal.sh FEniCS/platforms/supported/myplatform.platform
+
+ Installing FEniCS with CUDA support
+
+ Dorsal can build PETSc with support for CUDA, using the Cusp and Thrust
+ libraries. This enables DOLFIN to use PETSc's interfacing to Cusp for GPU
+ acceleration of the solution of linear systems. Before builing with Dorsal,
+ you must manually install CUDA and verify the installation. Instructions
+ are provided at NVIDIA's webpages: www.nvidia.com.
+
+ After instaling CUDA, do the following to have Dorsal build PETSc
+ with CUDA support:
+
+ 1. Set the variable CUDA_DIR, either in your environment:
+
+ export CUDA_DIR=<path to cuda install> (default /usr/local/cuda)
+
+ or in the .platform file corresponding to your system:
+
+ default CUDA_DIR=<path to cuda install>
+
+ 2. Add "cusp" to the list of packages to install in your the .platform-file
+ corresponding to your system. It's important to add "cusp" before "petsc",
+ like this:
+
+ PACKAGES=(
+ cusp
+ ...
+ petsc
+ ...
+ dolfin
+ )
+
+ 3. Invoke dorsal.sh as usual.
+
+
+ Troubleshooting and getting help
+
+ If you run into any problems, ensure that you've installed all the
+ preliminary dependencies for your platform (usually from the system
+ package manager) that Dorsal assumes you already have. An incomplete
+ list of this is provided in the .platform file for each platform,
+ along with platform-specific tips. In most cases, these should solve
+ your problem.
+
+ If you know Dorsal supports your platform but it fails to
+ automatically recognise it, try invoking Dorsal by specifying your
+ platform manually:
+
+ ./dorsal.sh FEniCS/platforms/supported/myplatform.platform
+
+ If you're having further difficulty, please see
+ http://fenicsproject.org/support for contact information. We will
+ try to help.
+
+
+ Elements of Dorsal's design
+
+ Dorsal is written in bash and its design is based on a simplified
+ version of the FreeBSD Ports system. The main Dorsal script
+ (dorsal.sh) can be a bit magic in a few places (mostly thanks to ace
+ bash hacker Joachim Berdal Haga), but at the level a user interacts
+ with it, Dorsal is pretty uncomplicated.
+
+ Here is the entire story.
+
+ Platform files are files specific to a given platform. These files
+ live in the `platforms' folder and have the suffix
+ `.platform'. These files contain any system specific variables,
+ build instructions, and contains a list of packages that Dorsal
+ needs to build. Usually, the more packages that your system package
+ manager can handle, the smaller this list will be.
+
+ If you are interested in adding support for a new platform, you
+ should look for an existing platform that is similar to yours, make
+ a copy of it, and try to modify it to suit your needs.
+
+ In order to inform Dorsal how to build each package, we introduce
+ package files. Not surprisingly, package files have the suffix
+ `.package' and live in the `packages' folder. These files specify
+ several package details, including where the package should be
+ downloaded from, how it is packed, what buildchain it uses, any
+ package-specific build instructions if needed, etc. A superset of
+ these attributes are documented in packages/template.package.
+
+ If you are interested in adding support for a new package, take a
+ look at packages/template.package, as well as other related packages
+ for ideas.
+
+ A majority of the package files are only 3--4 lines long, but some
+ highly-specialised ones (e.g. dolfin.package) are significantly
+ bigger. Through needing to support a large number of varied
+ packages, Dorsal has evolved a fairly flexible package definition
+ structure. In my opinion, this is what gives Dorsal its
+ versatility.
+
+ When you invoke Dorsal via:
+
+ ./dorsal.sh FEniCS/platforms/supported/myplatform.platform
+
+ the build script sets any platform specific variables defined in
+ myplatform.platform, and attempts to build and install each package
+ in the list PACKAGES. For each package in the list, it looks at the
+ corresponding package file for hints on how to treat the package.
+
+ Furthermore, when Dorsal is invoked without any arguments:
+
+ ./dorsal.sh
+
+ it tries to do an additional step. Dorsal first tries to guess an
+ appropriate platform file for your system (by probing your operating
+ system for something specific to it), and then proceeds to work on
+ that platform file.
+
+ That completes the story.
--- /dev/null
+# Global configuration variables go here. You will want to tweak this
+# file to suit your needs. If you want to keep local changes that are
+# not overwritten by repository updates, those can be written
+# to local.cfg instead (entries there will override those in this file).
+
+# Meta-project to build
+PROJECT=deal.II
+CLEAN_BUILD=false
+
+#########################################################################
+#Choose components of deal.II
+DEAL_CONFOPTS=" \
+-D CMAKE_BUILD_TYPE=DebugRelease \
+-D DEAL_II_COMPONENT_DOCUMENTATION:BOOL=OFF \
+-D DEAL_II_WITH_ARPACK:BOOL=OFF \
+-D DEAL_II_WITH_BOOST:BOOL=ON \
+-D DEAL_II_WITH_FUNCTIONPARSER:BOOL=ON \
+-D DEAL_II_WITH_LAPACK:BOOL=ON \
+-D DEAL_II_WITH_METIS:BOOL=OFF \
+-D DEAL_II_WITH_MUMPS:BOOL=OFF \
+-D DEAL_II_WITH_MPI:BOOL=ON \
+-D DEAL_II_WITH_NETCDF:BOOL=OFF \
+-D DEAL_II_WITH_P4EST:BOOL=ON \
+-D DEAL_II_WITH_PETSC:BOOL=ON \
+-D DEAL_II_WITH_SLEPC:BOOL=ON \
+-D DEAL_II_WITH_THREADS:BOOL=OFF \
+-D DEAL_II_WITH_TRILINOS:BOOL=ON \
+-D DEAL_II_WITH_UMFPACK:BOOL=ON \
+-D DEAL_II_WITH_ZLIB:BOOL=ON \
+-D DEAL_II_WITH_HDF5:BOOL=ON \
+"
+
+# Please add the following path(es) to DEAL_CONFOPTS ahead,
+# if you wish to use (self-compiled) versions of them together
+# with deal.II.
+# Make sure, that the coinciding option is setted to "ON".
+# If you want to use the packages from your system, you
+# may not set the variables (usually deal.II is smart enough
+# to recognise them automatically).
+# If you want to install the packages using CANDI,
+# simply set the option to ON and do NOT specify the path,
+# this will be done automatically elsewhere.
+#
+#-D ARPACK_DIR= \
+#-D METIS_DIR= \
+#-D MUMPS_DIR= \
+#-D P4EST_DIR= \
+#-D TRILINOS_DIR= \
+#-D HDF5_DIR= \
+
+#########################################################################
+# Prefix directory
+PREFIX_PATH=${HOME}/apps/candi
+COMPILER=native-openmpi
+
+# Where do you want the downloaded source files to go?
+DOWNLOAD_PATH=${PREFIX_PATH}/src
+
+# Where do you want to unpack source files to go?
+UNPACK_PATH=${PREFIX_PATH}/unpack
+
+# Where do you want the build files to go?
+BUILD_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}-build
+
+# Where do you want the compiled software installed?
+INSTALL_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}
+
+# How many processes would you like to build using?
+PROCS=1
+
+# Would you like to build stable versions of projects?
+# If STABLE_BUILD=false, then the development version of deal.II will be
+# installed.
+STABLE_BUILD=true
+
--- /dev/null
+#!/usr/bin/env bash
+set -a
+
+# Copyright (C) 2013-2014 by Uwe Koecher #
+# AND by the DORSAL Authors, cf. the file AUTHORS for details #
+# #
+# This file is part of CANDI. #
+# #
+# CANDI is free software: you can redistribute it and/or modify #
+# it under the terms of the GNU Lesser General Public License as #
+# published by the Free Software Foundation, either #
+# version 2.1 of the License, or (at your option) any later version. #
+# #
+# CANDI is distributed in the hope that it will be useful, #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
+# GNU Lesser General Public License for more details. #
+# #
+# You should have received a copy of the GNU Lesser General Public License #
+# along with CANDI. If not, see <http://www.gnu.org/licenses/>. #
+
+# REMARK: CANDI (Compile & Install) is a majorly tweaked and extended #
+# software based on DORSAL. #
+# The origin is DORSAL (also licensed under the LGPL): #
+# https://bitbucket.org/fenics-project/dorsal/src #
+# master c667be2 2013-11-27 #
+
+# The Unix date command does not work with nanoseconds, so use
+# the GNU date instead. This is available in the 'coreutils' package
+# from MacPorts.
+if builtin command -v gdate > /dev/null; then
+ DATE_CMD=$(which gdate)
+else
+ DATE_CMD=$(which date)
+fi
+
+# Start global timer
+TIC_GLOBAL="$(${DATE_CMD} +%s%N)"
+
+# Colours for progress and error reporting
+BAD="\033[1;31m"
+GOOD="\033[1;32m"
+WARN="\033[1;34m"
+BOLD="\033[1m"
+
+### Define helper functions ###
+
+prettify_dir() {
+ # Make a directory name more readable by replacing homedir with "~"
+ echo ${1/#$HOME\//~\/}
+}
+
+cecho() {
+ # Display messages in a specified colour
+ COL=$1; shift
+ echo -e "${COL}$@\033[0m"
+}
+
+default () {
+ # Export a variable, if it is not already set
+ VAR="${1%%=*}"
+ VALUE="${1#*=}"
+ eval "[[ \$$VAR ]] || export $VAR='$VALUE'"
+}
+
+quit_if_fail() {
+ # Exit with some useful information if something goes wrong
+ STATUS=$?
+ if [ ${STATUS} -ne 0 ]; then
+ cecho ${BAD} 'Failure with exit status:' ${STATUS}
+ cecho ${BAD} 'Exit message:' $1
+ exit ${STATUS}
+ fi
+}
+
+package_fetch () {
+ # First, make sure we're in the right directory before downloading
+ cd ${DOWNLOAD_PATH}
+
+ cecho ${GOOD} "Fetching ${NAME}"
+
+ # Fetch the package appropriately from its source
+ if [ ${PACKING} = ".tar.bz2" ] || [ ${PACKING} = ".tar.gz" ] || [ ${PACKING} = ".tbz2" ] || [ ${PACKING} = ".tgz" ] || [ ${PACKING} = ".tar.xz" ] || [ ${PACKING} = ".zip" ]; then
+ # Only download archives that do not exist
+ if [ ! -e ${NAME}${PACKING} ]; then
+ if [ ${STABLE_BUILD} = false ] && [ ${USE_SNAPSHOTS} = true ]; then
+ wget --retry-connrefused --no-check-certificate --server-response -c ${SOURCE}${NAME}${PACKING} -O ${NAME}${PACKING}
+ else
+ wget --retry-connrefused --no-check-certificate -c ${SOURCE}${NAME}${PACKING} -O ${NAME}${PACKING}
+ fi
+ fi
+
+ # Download again when using snapshots and unstable packages, but
+ # only when the timestamp has changed
+ if [ ${STABLE_BUILD} = false ] && [ ${USE_SNAPSHOTS} = true ]; then
+ wget --timestamping --retry-connrefused --no-check-certificate ${SOURCE}${NAME}${PACKING}
+ fi
+ elif [ ${PACKING} = "hg" ]; then
+ cd ${UNPACK_PATH}
+ # Suitably clone or update hg repositories
+ if [ ! -d ${NAME} ]; then
+ hg clone ${SOURCE}${NAME}
+ else
+ cd ${NAME}
+ hg pull --update
+ cd ..
+ fi
+ elif [ ${PACKING} = "svn" ]; then
+ cd ${UNPACK_PATH}
+ # Suitably check out or update svn repositories
+ if [ ! -d ${NAME} ]; then
+ svn co ${SOURCE} ${NAME}
+ else
+ cd ${NAME}
+ svn up
+ cd ..
+ fi
+ elif [ ${PACKING} = "git" ]; then
+ cd ${UNPACK_PATH}
+ # Suitably clone or update git repositories
+ if [ ! -d ${NAME} ]; then
+ git clone ${SOURCE}${NAME}
+ else
+ cd ${NAME}
+ git pull
+ cd ..
+ fi
+ elif [ ${PACKING} = "bzr" ]; then
+ cd ${UNPACK_PATH}
+ # Suitably branch or update bzr repositories
+ if [ ! -d ${NAME} ]; then
+ bzr branch ${SOURCE}${NAME}
+ else
+ cd ${NAME}
+ bzr pull
+ cd ..
+ fi
+ fi
+
+ # Quit with a useful message if something goes wrong
+ quit_if_fail "Error fetching ${NAME}."
+}
+
+package_verify() {
+ # First make sure we're in the right directory before verifying checksum
+ cd ${DOWNLOAD_PATH}
+
+ # Only need to verify archives
+ if [ ${PACKING} = ".tar.bz2" ] || [ ${PACKING} = ".tar.gz" ] || [ ${PACKING} = ".tbz2" ] || ${PACKING} = ".tgz" ] || [ ${PACKING} = ".tar.xz" ] || [ ${PACKING} = ".zip" ]; then
+ cecho ${GOOD} "Verifying ${NAME}${PACKING}"
+
+ # Check checksum has been specified for the package
+ if [ -z "${CHECKSUM}" ]; then
+ cecho ${WARN} "No checksum for ${NAME}${PACKING}"
+ return 1
+ fi
+
+ # Skip checksum if asked to ignore
+ if [ "${CHECKSUM}" = "ignore" ]; then
+ cecho ${WARN} "Skipped checksum check for ${NAME}${PACKING}"
+ return 1
+ fi
+
+ # Make sure the archive was downloaded
+ if [ ! -e ${NAME}${PACKING} ]; then
+ cecho ${BAD} "${NAME}${PACKING} does not exist. Please download first."
+ exit 1
+ fi
+
+ # Verify checksum using md5/md5sum
+ if builtin command -v md5 > /dev/null; then
+ test "${CHECKSUM}" = "$(md5 -q ${NAME}${PACKING})" && echo "${NAME}${PACKING}: OK"
+ elif builtin command -v md5sum > /dev/null; then
+ echo "${CHECKSUM} ${NAME}${PACKING}" | md5sum --check -
+ else
+ cecho ${BAD} "Neither md5 nor md5sum were found in the PATH"
+ return 1
+ fi
+ fi
+
+ # Quit with a useful message if something goes wrong
+ quit_if_fail "Error verifying checksum for ${NAME}${PACKING}"
+}
+
+
+package_unpack() {
+ # First make sure we're in the right directory before unpacking
+ cd ${UNPACK_PATH}
+ FILE_TO_UNPACK=${DOWNLOAD_PATH}/${NAME}${PACKING}
+
+ # Only need to unpack archives
+ if [ ${PACKING} = ".tar.bz2" ] || [ ${PACKING} = ".tar.gz" ] || [ ${PACKING} = ".tbz2" ] || [ ${PACKING} = ".tgz" ] || [ ${PACKING} = ".tar.xz" ] || [ ${PACKING} = ".zip" ]; then
+ cecho ${GOOD} "Unpacking ${NAME}"
+ # Make sure the archive was downloaded
+ if [ ! -e ${FILE_TO_UNPACK} ]; then
+ cecho ${BAD} "${FILE_TO_UNPACK} does not exist. Please download first."
+ exit 1
+ fi
+
+ # Unpack the archive only if it isn't already or when using
+ # snapshots and unstable packages
+ if [ ${STABLE_BUILD} = false ] && [ ${USE_SNAPSHOTS} = true ] || [ ! -d "${EXTRACTSTO}" ]; then
+ # Unpack the archive in accordance with its packing
+ if [ ${PACKING} = ".tar.bz2" ] || [ ${PACKING} = ".tbz2" ]; then
+ tar xjf ${FILE_TO_UNPACK}
+ elif [ ${PACKING} = ".tar.gz" ] || [ ${PACKING} = ".tgz" ]; then
+ tar xzf ${FILE_TO_UNPACK}
+ elif [ ${PACKING} = ".tar.xz" ]; then
+ tar xJf ${FILE_TO_UNPACK}
+ elif [ ${PACKING} = ".zip" ]; then
+ unzip ${FILE_TO_UNPACK}
+ fi
+ fi
+ fi
+
+ unset FILE_TO_UNPACK
+
+ # Quit with a useful message if something goes wrong
+ quit_if_fail "Error unpacking ${NAME}."
+}
+
+package_build() {
+ # Get things ready for the compilation process
+ cecho ${GOOD} "Building ${NAME}"
+ if [ ! -d "${EXTRACTSTO}" ]; then
+ cecho ${BAD} "${EXTRACTSTO} does not exist -- please unpack first."
+ exit 1
+ fi
+
+ # Set the BUILDDIR if nothing else was specified
+ default BUILDDIR=${BUILD_PATH}/${NAME}
+
+ # Clean the build directory if specified
+ if [ -d ${BUILDDIR} ] && [ ${CLEAN_BUILD} = "true" ]; then
+ rm -rf ${BUILDDIR}
+ fi
+
+ # Create build directory if it does not exist
+ if [ ! -d ${BUILDDIR} ]; then
+ mkdir -p ${BUILDDIR}
+ fi
+
+ # Move to the build directory
+ cd ${BUILDDIR}
+
+ # Carry out any package-specific setup
+ package_specific_setup
+ quit_if_fail "There was a problem in build setup for ${NAME}."
+
+ # Use the appropriate build system to compile and install the
+ # package
+ for cmd_file in candi_configure candi_build; do
+ echo "#!/usr/bin/env bash" >${cmd_file}
+ chmod a+x ${cmd_file}
+
+ # Write variables to files so that they can be run stand-alone
+ declare -x| grep -v "!::"| grep -v "ProgramFiles(x86)" >>${cmd_file}
+
+ # From this point in candi_*, errors are fatal
+ echo "set -e" >>${cmd_file}
+ done
+
+ if [ ${BUILDCHAIN} = "autotools" ]; then
+ if [ -f ${UNPACK_PATH}/${EXTRACTSTO}/configure ]; then
+ echo ${UNPACK_PATH}/${EXTRACTSTO}/configure ${CONFOPTS} --prefix=${INSTALL_PATH} >>candi_configure
+ fi
+
+ for target in "${TARGETS[@]}"; do
+ echo make ${MAKEOPTS} -j ${PROCS} $target >>candi_build
+ done
+ elif [ ${BUILDCHAIN} = "python" ]; then
+ echo cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* . >>candi_configure
+ echo python setup.py install --prefix=${INSTALL_PATH} >>candi_build
+ elif [ ${BUILDCHAIN} = "scons" ]; then
+ echo cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* . >>candi_configure
+ for target in "${TARGETS[@]}"; do
+ echo scons -j ${PROCS} ${SCONSOPTS} prefix=${INSTALL_PATH} $target >>candi_build
+ done
+ elif [ ${BUILDCHAIN} = "cmake" ]; then
+ echo cmake ${CONFOPTS} -DCMAKE_INSTALL_PREFIX=${INSTALL_PATH} ${UNPACK_PATH}/${EXTRACTSTO} >>candi_configure
+ for target in "${TARGETS[@]}"; do
+ echo make ${MAKEOPTS} -j ${PROCS} $target >>candi_build
+ done
+# for target in "${TARGETS[@]}"; do
+# echo make -C ${BUILDDIR} ${MAKEOPTS} -j ${PROCS} $target >>candi_build
+# done
+ elif [ ${BUILDCHAIN} = "custom" ]; then
+ # Write the function definition to file
+ declare -f package_specific_build >>candi_build
+ echo package_specific_build >>candi_build
+ fi
+ echo "touch candi_successful_build" >> candi_build
+
+ # Run the generated build scripts
+ if [ ${BASH_VERSINFO} -ge 3 ]; then
+ set -o pipefail
+ ./candi_configure 2>&1 | tee candi_configure.log
+ else
+ ./candi_configure
+ fi
+ quit_if_fail "There was a problem configuring ${NAME}."
+
+ if [ ${BASH_VERSINFO} -ge 3 ]; then
+ set -o pipefail
+ ./candi_build 2>&1 | tee candi_build.log
+ else
+ ./candi_build
+ fi
+ quit_if_fail "There was a problem building ${NAME}."
+
+ # Carry out any package-specific post-build instructions
+ package_specific_install
+ quit_if_fail "There was a problem in post-build instructions for ${NAME}."
+}
+
+package_register() {
+ # Set any package-specific environment variables
+ package_specific_register
+ quit_if_fail "There was a problem setting environment variables for ${NAME}."
+}
+
+package_conf() {
+ # Write any package-specific environment variables to a config file,
+ # i.e. e.g. a modulefile or source-able *.conf file
+ package_specific_conf
+ quit_if_fail "There was a problem creating the configfiles for ${NAME}."
+}
+
+guess_platform() {
+ # Try to guess the name of the platform we're running on
+ if [ -f /usr/bin/cygwin1.dll ]
+ then
+ echo cygwin
+ elif [ -f /etc/fedora-release ]
+ then
+ local FEDORANAME=`gawk '{if (match($0,/\((.*)\)/,f)) print f[1]}' /etc/fedora-release`
+ case ${FEDORANAME} in
+ "Schrödinger’s Cat"*) echo fedora19;;
+ Heisenbug*) echo fedora20;;
+ esac
+ elif [ -x /usr/bin/sw_vers ]
+ then
+ local MACOSVER=$(sw_vers -productVersion)
+ case ${MACOSVER} in
+ 10.4*) echo tiger;;
+ 10.5*) echo leopard;;
+ 10.6*) echo snowleopard;;
+ 10.7*) echo lion;;
+ 10.8*) echo mountainlion;;
+ esac
+ elif [ -x /usr/bin/lsb_release ]; then
+ local DISTRO=$(lsb_release -i -s)
+ local CODENAME=$(lsb_release -c -s)
+ local DESCRIPTION=$(lsb_release -d -s)
+ case ${DISTRO}:${CODENAME}:${DESCRIPTION} in
+ *:*:*Ubuntu*\ 13*) echo ubuntu13;;
+ *:Tikanga*:*) echo rhel5;;
+ *:Santiago*:*) echo rhel6;;
+ Scientific:Carbon*:*) echo rhel6;;
+ *:*:*CentOS*\ 5*) echo rhel5;;
+ *:*:*CentOS*\ 6*) echo rhel6;;
+ *:*:*openSUSE\ 12*) echo opensuse12;;
+ *:*:*openSUSE\ 13*) echo opensuse13;;
+ esac
+ fi
+}
+
+guess_architecture() {
+ # Try to guess the architecture of the platform we are running on
+ ARCH=unknown
+ if [ -x /usr/bin/uname -o -x /bin/uname ]
+ then
+ ARCH=`uname -m`
+ fi
+}
+
+###############################################################################
+# Start the build process
+
+export ORIG_DIR=`pwd`
+
+# Read configuration variables from candi.cfg
+source candi.cfg
+
+# For changes specific to your local setup or for debugging, use local.cfg
+if [ -f local.cfg ]; then
+ source local.cfg
+fi
+
+# If any variables are missing, revert them to defaults
+default PROJECT=deal.II
+default DOWNLOAD_PATH=${HOME}/apps/candi/${PROJECT}/src
+default UNPACK_PATH=${HOME}/apps/candi/${PROJECT}/unpack
+default BUILD_PATH=${HOME}/apps/candi/${PROJECT}/build
+default CLEAN_BUILD=false
+default INSTALL_PATH=${HOME}/apps/candi/${PROJECT}
+default PROCS=1
+default STABLE_BUILD=true
+default USE_SNAPSHOTS=false
+
+# Check if project was specified correctly
+if [ -d ${PROJECT} ]; then
+ if [ -d ${PROJECT}/platforms -a -d ${PROJECT}/packages ]; then
+ cecho ${GOOD} "Found configuration for project ${PROJECT}."
+ else
+ cecho ${BAD} "No subdirectories 'platforms' and 'packages' in ${PROJECT}."
+ echo "Please make sure there exists proper project configuration directory."
+ exit 1
+ fi
+else
+ cecho ${BAD} "Error: No project configuration directory found for project ${PROJECT}."
+ echo "Please check if you have specified right project name in candi.cfg"
+ echo "Please check if you have directory called ${PROJECT}"
+ echo "with subdirectories ${PROJECT}/platforms and ${PROJECT}/packages"
+ exit 1
+fi
+
+# Check if candi.sh was invoked correctly
+if [ $# -eq 0 ]; then
+ PLATFORM_SUPPORTED=${PROJECT}/platforms/supported/`guess_platform`.platform
+ PLATFORM_CONTRIBUTED=${PROJECT}/platforms/contributed/`guess_platform`.platform
+ PLATFORM_DEPRECATED=${PROJECT}/platforms/deprecated/`guess_platform`.platform
+ if [ -e ${PLATFORM_SUPPORTED} ]; then
+ PLATFORM=${PLATFORM_SUPPORTED}
+ cecho ${GOOD} "Building ${PROJECT} using ${PLATFORM}."
+ elif [ -e ${PLATFORM_CONTRIBUTED} ]; then
+ PLATFORM=${PLATFORM_CONTRIBUTED}
+ cecho ${GOOD} "Building ${PROJECT} using ${PLATFORM}."
+ cecho ${BOLD} "Warning: Platform is not officially supported but may still work!"
+ elif [ -e ${PLATFORM_DEPRECATED} ]; then
+ PLATFORM=${PLATFORM_DEPRECATED}
+ cecho ${GOOD} "Building ${PROJECT} using ${PLATFORM}."
+ cecho ${BAD} "Warning: Platform is deprecated and will be removed shortly but may still work!"
+ else
+ cecho ${BAD} "Error: Platform to build for not specified (and not automatically recognised)."
+ echo "If you know the platform you are interested in (myplatform), please specify it directly, as:"
+ echo "./candi.sh ${PROJECT}/platforms/myplatform.platform"
+ echo "If you'd like to learn more, refer to the file USAGE for detailed usage instructions."
+ exit 1
+ fi
+ echo "-------------------------------------------------------------------------------"
+ # Show the initial comments in the platform file, as it often
+ # contains instructions about packages that should be installed
+ # first, etc. Remove first field '#' so that cut-and-paste of
+ # e.g. apt-get commands is easy.
+ awk '/^##/ {exit} {$1=""; print}' <${PLATFORM}
+ echo
+ echo "Downloading files to: $(prettify_dir ${DOWNLOAD_PATH})"
+ echo "Unpacking files to: $(prettify_dir ${UNPACK_PATH})"
+ echo "Building projects in: $(prettify_dir ${BUILD_PATH})"
+ echo "Installing projects in: $(prettify_dir ${INSTALL_PATH})"
+ echo
+ if [ ${STABLE_BUILD} = true ]; then
+ echo "Building stable point-releases of ${PROJECT} projects."
+ else
+ if [ ${USE_SNAPSHOTS} = true ]; then
+ echo "Building development versions of ${PROJECT} projects (using snapshots)."
+ else
+ echo "Building development versions of ${PROJECT} projects."
+ fi
+ fi
+ echo "-------------------------------------------------------------------------------"
+ cecho ${GOOD} "Please make sure you've read the instructions above and your system"
+ cecho ${GOOD} "is ready for installing ${PROJECT}. We find it easiest to copy and paste"
+ cecho ${GOOD} "these instructions in another terminal window."
+
+ if builtin command -v module > /dev/null; then
+ echo ""
+ echo "-------------------------------------------------------------------------------"
+ cecho ${GOOD} "$(module list)"
+ echo "-------------------------------------------------------------------------------"
+ fi
+
+ echo ""
+ cecho ${GOOD} "Once ready, hit enter to continue!"
+ read
+elif [ $# -eq 1 ]; then
+ PLATFORM=${1}
+elif [ $# -eq 2 ]; then
+ # Check if the user wants to install a single package
+ if [ ${1} == "install-package" ]; then
+ PACKAGE=${2}
+ # Check if the package exists
+ if [ ! -e ${PROJECT}/packages/${PACKAGE}.package ]; then
+ cecho ${BAD} "${PROJECT}/packages/${PACKAGE}.package does not exist yet. Please create it."
+ exit 1
+ fi
+ PACKAGES=(${PACKAGE})
+ PLATFORM="${PROJECT}/platforms/.single"
+ else
+ echo "If you'd like to install a single package, please use the syntax:"
+ echo "./candi.sh install-package foo"
+ exit 1
+ fi
+fi
+
+# Make sure the requested platform exists
+if [ -e "${PLATFORM}" ]; then
+ source ${PLATFORM}
+else
+ cecho ${BAD} "Platform set '${PLATFORM}' not found. Refer to the file README to check if your platform is supported."
+ exit 1
+fi
+
+# If the platform doesn't override the system python by installing its
+# own, figure out the version of the existing python
+default PYTHONVER=`python -c "import sys; print sys.version[:3]"`
+
+# Create necessary directories and set appropriate variables
+mkdir -p ${DOWNLOAD_PATH}
+mkdir -p ${UNPACK_PATH}
+mkdir -p ${BUILD_PATH}
+mkdir -p ${INSTALL_PATH}
+
+ORIG_INSTALL_PATH=${INSTALL_PATH}
+ORIG_PROCS=${PROCS}
+guess_architecture
+
+# Reset timings
+TIMINGS=""
+
+# Fetch and build individual packages
+for PACKAGE in ${PACKAGES[@]}; do
+ # Start timer
+ TIC="$(${DATE_CMD} +%s%N)"
+
+ # Return to the main CANDI directory
+ cd ${ORIG_DIR}
+
+ # Skip building this package if the user requests it
+ SKIP=false
+ case ${PACKAGE} in
+ skip:*) SKIP=true; PACKAGE=${PACKAGE#*:};;
+ once:*) SKIP=maybe; PACKAGE=${PACKAGE#*:};;
+ esac
+
+ # Check if the package exists
+ if [ ! -e ${PROJECT}/packages/${PACKAGE}.package ]; then
+ cecho ${BAD} "${PROJECT}/packages/${PACKAGE}.package does not exist yet. Please create it."
+ exit 1
+ fi
+
+ # Reset package-specific variables
+ unset NAME
+ unset VERSION
+ unset SOURCE
+ unset PACKING
+ unset EXTRACTSTO
+ unset CHECKSUM
+ unset BUILDCHAIN
+ unset BUILDDIR
+ unset CONFOPTS
+ unset MAKEOPTS
+ unset SCONSOPTS
+ unset CONFIG_FILE
+ TARGETS=('' install)
+ PROCS=${ORIG_PROCS}
+ INSTALL_PATH=${ORIG_INSTALL_PATH}
+
+ # Reset package-specific functions
+ package_specific_setup () { true; }
+ package_specific_build () { true; }
+ package_specific_install () { true; }
+ package_specific_register () { true; }
+ package_specific_conf() { true; }
+
+ # Fetch information pertinent to the package
+ source ${PROJECT}/packages/${PACKAGE}.package
+
+ # Turn to a stable version of the package if that's what the user
+ # wants and it exists
+ if [ ${STABLE_BUILD} = true ] && [ -e ${PROJECT}/packages/${PACKAGE}-stable.package ]; then
+ source ${PROJECT}/packages/${PACKAGE}-stable.package
+ elif [ ${STABLE_BUILD} = false ] && [ ${USE_SNAPSHOTS} = true ] && [ -e ${PROJECT}/packages/${PACKAGE}-snapshot.package ]; then
+ source ${PROJECT}/packages/${PACKAGE}-snapshot.package
+ fi
+
+ # Ensure that the package file is sanely constructed
+ if [ ! "${BUILDCHAIN}" ]; then
+ cecho ${BAD} "${PACKAGE}.package is not properly formed. Please check that all necessary variables are defined."
+ exit 1
+ fi
+
+ if [ ! "${BUILDCHAIN}" = "ignore" ] ; then
+ if [ ! "${NAME}" ] || [ ! "${SOURCE}" ] || [ ! "${PACKING}" ]; then
+ cecho ${BAD} "${PACKAGE}.package is not properly formed. Please check that all necessary variables are defined."
+ exit 1
+ fi
+ fi
+
+ # Most packages extract to a directory named after the package
+ default EXTRACTSTO=${NAME}
+
+ if [ ${SKIP} = maybe ] && [ ! -f ${BUILD_PATH}/${NAME}/candi_successful_build ]; then
+ SKIP=false
+ fi
+
+ # Fetch, unpack and build package
+ if [ ${SKIP} = false ]; then
+ # Fetch, unpack and build the current package
+ package_fetch
+ package_verify
+ package_unpack
+ package_build
+ else
+ # Let the user know we're skipping the current package
+ cecho ${GOOD} "Skipping ${NAME}"
+ fi
+ package_register
+ package_conf
+
+ # Store timing
+ TOC="$(($(${DATE_CMD} +%s%N)-TIC))"
+ TIMINGS="$TIMINGS"$"\n""$PACKAGE: ""$((TOC/1000000000)) s"
+done
+
+# Stop global timer
+TOC_GLOBAL="$(($(${DATE_CMD} +%s%N)-TIC_GLOBAL))"
+
+# Display a summary
+echo
+cecho ${GOOD} "Build finished in $((TOC_GLOBAL/1000000000)) seconds."
+echo
+echo "Summary of timings:"
+echo -e "$TIMINGS"
+
--- /dev/null
+NAME=boost_1_55_0
+SOURCE=http://downloads.sourceforge.net/boost/
+PACKING=.tar.bz2
+CHECKSUM=d6eef4b4cacb2183f2bf265a5a03a354
+BUILDCHAIN=custom
+
+if [ ! -z "${BZIP2_DIR}" ]; then
+ CONFOPTS="${CONFOPTS}
+ -sNO_BZIP2=0
+ -sBZIP2_BINARY=bz2
+ -sBZIP2_INCLUDE=${BZIP2_DIR}/include
+ -sBZIP2_LIBPATH=${BZIP2_DIR}/lib"
+fi
+
+package_specific_build () {
+ cp -rf ${UNPACK_PATH}/${NAME}/* .
+ ./bootstrap.sh --prefix=${INSTALL_PATH}
+ echo "using mpi ;" > user-config.jam
+ ./b2 -j ${PROCS} --user-config=user-config.jam --build-dir=candi_build_dir link=shared install ${CONFOPTS}
+}
+
+package_specific_register () {
+ export BOOST_ROOT=${INSTALL_PATH}
+ export BOOST_INCLUDEDIR=${INSTALL_PATH}/include
+ export BOOST_LIBRARYDIR=${INSTALL_PATH}/lib
+ export BOOST_USE_MULTITHREADED=OFF
+}
--- /dev/null
+NAME=deal.II-svn
+SOURCE=https://svn.dealii.org/trunk/deal.II
+PACKING=svn
+BUILDCHAIN=custom
+
+CONFOPTS=" \
+${DEAL_CONFOPTS} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D HDF5_DIR=${HDF5_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D TRILINOS_DIR=${TRILINOS_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D PETSC_DIR=${PETSC_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D SLEPC_DIR=${SLEPC_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D CMAKE_INSTALL_PREFIX:PATH="${INSTALL_PATH}" \
+"
+
+package_specific_setup () {
+ echo "Build ${NAME} in ${BUILD_PATH}/${NAME}"
+ mkdir -p "${BUILD_PATH}/${NAME}"
+ cd "${BUILD_PATH}/${NAME}"
+
+ DEALII_SOURCE="${DOWNLOAD_PATH}/${EXTRACTSTO}"
+
+ # configure
+ cmake ${CONFOPTS} ${DEALII_SOURCE}
+
+ # make
+ make -j${PROCS}
+ make install
+}
+
+package_specific_register () {
+ export DEALII_DIR=${INSTALL_PATH}
+}
--- /dev/null
+VERSION=8.1.0
+NAME=deal.II-${VERSION}
+SOURCE=https://dealii.googlecode.com/files/
+PACKING=.tar.gz
+CHECKSUM=aa8fadc2ce5eb674f44f997461bf668d
+BUILDCHAIN=cmake
+EXTRACTSTO=deal.II
+
--- /dev/null
+VERSION=svn
+NAME=deal.II-${VERSION}
+SOURCE=https://svn.dealii.org/trunk/deal.II
+PACKING=svn
+BUILDCHAIN=cmake
+
+CONFOPTS=" \
+${DEAL_CONFOPTS} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D HDF5_DIR=${HDF5_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D TRILINOS_DIR=${TRILINOS_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D PETSC_DIR=${PETSC_DIR} \
+"
+
+CONFOPTS="${CONFOPTS} \
+-D SLEPC_DIR=${SLEPC_DIR} \
+"
+
+# **********************************************************************************
+package_specific_conf() {
+MODULEFILE_PATH=${INSTALL_PATH}/conf/modulefiles/deal.II/${COMPILER}
+CONFIG_FILE=${MODULEFILE_PATH}/${VERSION}
+CURRENT_MODULES=$(echo ${LOADEDMODULES} | sed 's/:/\ /')
+
+ # Generate modulefile
+
+ mkdir -p ${MODULEFILE_PATH}
+ rm -f $CONFIG_FILE
+ echo "#%Module 1.0
+#
+# deal.II module for use with 'environment-modules' package:
+#
+module-whatis "Provides the deal.II toolbox."
+conflict deal.II
+module load ${CURRENT_MODULES}
+
+setenv DEAL_II_DIR ${INSTALL_PATH}
+" >> $CONFIG_FILE
+
+ echo
+ echo "${NAME} has now been installed in"
+ echo
+ cecho ${GOOD} " ${INSTALL_PATH}"
+ echo
+ echo "To update your environment variables, use the created modulefile:"
+ echo
+ cecho ${GOOD} " $CONFIG_FILE"
+ echo
+
+ export DEAL_II_DIR=${INSTALL_PATH}
+}
+
--- /dev/null
+VERSION=1.8.12
+NAME=hdf5-${VERSION}
+SOURCE=http://www.hdfgroup.org/ftp/HDF5/releases/${NAME}/src/
+PACKING=.tar.gz
+CHECKSUM=d804802feb99b87fc668a90e6fa34411
+BUILDCHAIN=autotools
+
+CONFOPTS="--enable-shared --enable-parallel"
+
+package_specific_register () {
+ export HDF5_DIR=${INSTALL_PATH}
+}
+
--- /dev/null
+VERSION=1.9
+NAME=hwloc-${VERSION}
+SOURCE=http://www.open-mpi.org/software/hwloc/v${VERSION}/downloads/
+PACKING=.tar.gz
+CHECKSUM=1f9f9155682fe8946a97c08896109508
+BUILDCHAIN=autotools
+
--- /dev/null
+NAME=p4est-0.3.4.2
+SOURCE=http://www.p4est.org/tarball/
+PACKING=.tar.gz
+CHECKSUM=ef38ea3be84628b1548188106a5b01e7
+BUILDCHAIN=custom
+
+package_specific_setup () {
+ function bdie () {
+ echo "Error: $@"
+ exit 1
+ }
+
+ if test -z "$CFLAGS" -a -z "$P4EST_CFLAGS_FAST" ; then
+ export CFLAGS_FAST="-O2"
+ else
+ export CFLAGS_FAST="$CFLAGS $P4EST_CFLAGS_FAST"
+ fi
+ echo "CFLAGS_FAST: $CFLAGS_FAST"
+
+ if test -z "$CFLAGS" -a -z "$P4EST_CFLAGS_DEBUG" ; then
+ export CFLAGS_DEBUG="-O0 -g"
+ else
+ export CFLAGS_DEBUG="$CFLAGS $P4EST_CFLAGS_DEBUG"
+ fi
+ echo "CFLAGS_DEBUG: $CFLAGS_DEBUG"
+
+ # choose names for fast and debug build directories
+ BUILD_FAST="${BUILD_PATH}/${NAME}/FAST"
+ BUILD_DEBUG="${BUILD_PATH}/${NAME}/DEBUG"
+
+ # choose names for fast and debug installation directories
+ INSTALL_FAST="${INSTALL_PATH}/${NAME}/FAST"
+ INSTALL_DEBUG="${INSTALL_PATH}/${NAME}/DEBUG"
+
+ echo
+ echo "This script tries configure and build the p4est library."
+ echo "Build FAST: $BUILD_FAST"
+ echo "Build DEBUG: $BUILD_DEBUG"
+ echo "Install FAST: $INSTALL_FAST"
+ echo "Install DEBUG: $INSTALL_DEBUG"
+ echo "Checking environment: CFLAGS P4EST_CFLAGS_FAST P4EST_CFLAGS_DEBUG"
+
+ test -f "${UNPACK_PATH}/${EXTRACTSTO}/src/p4est.h" || bdie "Main header file missing"
+ test -f "${UNPACK_PATH}/${EXTRACTSTO}/configure" || bdie "Configure script missing"
+
+ echo "See output in files .../config.output and .../make.output"
+ echo
+
+ # remove old versions
+ if test -d "${BUILD_PATH}/${NAME}"; then
+ rm -rf "${BUILD_PATH}/${NAME}"
+ fi
+
+ echo "Build FAST version in $BUILD_FAST"
+ mkdir -p "$BUILD_FAST"
+ cd "$BUILD_FAST"
+ "${UNPACK_PATH}/${EXTRACTSTO}/configure" --enable-mpi --enable-shared \
+ --disable-vtk-binary --without-blas \
+ --prefix="$INSTALL_FAST" CFLAGS="$CFLAGS_FAST" \
+ CPPFLAGS="-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL" \
+ "$@" > config.output || bdie "Error in configure"
+ make -C sc -j${PROCS} > make.output || bdie "Error in make sc"
+ make -j${PROCS} >> make.output || bdie "Error in make p4est"
+ make install >> make.output || bdie "Error in make install"
+ echo "FAST version installed in $INSTALL_FAST"
+
+ echo
+ echo "Build DEBUG version in $BUILD_DEBUG"
+ mkdir -p "$BUILD_DEBUG"
+ cd "$BUILD_DEBUG"
+ "${UNPACK_PATH}/${EXTRACTSTO}/configure" --enable-debug --enable-mpi --enable-shared \
+ --disable-vtk-binary --without-blas \
+ --prefix="$INSTALL_DEBUG" CFLAGS="$CFLAGS_DEBUG" \
+ CPPFLAGS="-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL" \
+ "$@" > config.output || bdie "Error in configure"
+ make -C sc -j${PROCS} > make.output || bdie "Error in make sc"
+ make -j${PROCS} >> make.output || bdie "Error in make p4est"
+ make install >> make.output || bdie "Error in make install"
+ echo "DEBUG version installed in $INSTALL_DEBUG"
+ echo
+
+ cd "${BUILD_PATH}/${NAME}"
+ touch dorsal_successful_build
+}
+
+
+package_specific_register () {
+ export P4EST_DIR=${INSTALL_PATH}/${NAME}
+}
--- /dev/null
+VERSION=3.4.4
+NAME=petsc-${VERSION}
+SOURCE=http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
+PACKING=.tar.gz
+CHECKSUM=7edbc68aa6d8d6a3295dd5f6c2f6979d
+BUILDCHAIN=custom
+
+CONFOPTS="
+ --with-debugging=0
+ --with-shared-libraries=1
+ --with-mpi=1
+ --with-x=0
+"
+
+for external_pkg in hypre; do
+ CONFOPTS="${CONFOPTS} --download-${external_pkg}=1"
+done
+
+if [ "$CC" ]; then
+ CONFOPTS="${CONFOPTS} CC=$CC"
+fi
+
+if [ "$CXX" ]; then
+ CONFOPTS="${CONFOPTS} CXX=$CXX"
+fi
+
+if [ "$FC" ]; then
+ CONFOPTS="${CONFOPTS} FC=$FC"
+fi
+
+if [ "$F77" ]; then
+ CONFOPTS="${CONFOPTS} F77=$F77"
+fi
+
+if [ "$F90" ]; then
+ CONFOPTS="${CONFOPTS} F90=$F90"
+fi
+
+if [ "${TRILINOS_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} --with-ml=1
+ --with-ml-lib=${TRILINOS_DIR}/lib/libml.so
+ --with-ml-include=${TRILINOS_DIR}/include"
+fi
+
+if [ "${CUDA_DIR}" ] && [ "${CUSP_DIR}" ]; then
+ CONFOPTS="${CONFOPTS} --with-cuda=1 --with-cuda-dir=${CUDA_DIR}
+ --with-cusp=1 --with-cusp-dir=${CUSP_DIR}
+ --with-thrust=1 --with-thrust-dir=${CUDA_DIR}/include"
+fi
+
+package_specific_setup () {
+ cd ${BUILDDIR}
+ cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* .
+
+ ./configure --prefix=${INSTALL_PATH}/${NAME} ${CONFOPTS}
+
+ make all test install
+}
+
+package_specific_register () {
+ export PETSC_DIR=${INSTALL_PATH}/${NAME}
+}
+
--- /dev/null
+VERSION=3.4.4
+NAME=slepc-${VERSION}
+SOURCE=http://www.grycap.upv.es/slepc/download/download.php?filename=
+PACKING=.tar.gz
+CHECKSUM=329179c5139027c7b293dd5ab0bc112c
+BUILDCHAIN=custom
+
+package_specific_setup () {
+ cd ${BUILDDIR}
+ cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* .
+
+ ./configure --prefix=${INSTALL_PATH}/${NAME} ${CONFOPTS}
+ make SLEPC_DIR=$PWD PETSC_DIR=${PETSC_DIR} PETSC_ARCH=arch-installed-petsc all test install
+}
+
+package_specific_register () {
+ export SLEPC_DIR=${INSTALL_PATH}/${NAME}
+}
+
--- /dev/null
+VERSION=11.8.1
+NAME=trilinos-${VERSION}-Source
+SOURCE=http://trilinos.sandia.gov/download/files/
+PACKING=.tar.gz
+CHECKSUM=3c9465b6d63d824e9dc0365ca73c3370
+BUILDCHAIN=cmake
+
+CONFOPTS="-D Trilinos_ENABLE_OpenMP:BOOL=OFF \
+ -D TPL_ENABLE_TBB:BOOL=OFF \
+ -D Trilinos_ENABLE_OPTIONAL_PACKAGES:BOOL=ON \
+ -D Trilinos_ENABLE_Didasko:BOOL=ON \
+ -D Trilinos_ENABLE_Sacado:BOOL=ON \
+ -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
+ -D CMAKE_BUILD_TYPE:STRING=RELEASE \
+ -D CMAKE_CXX_FLAGS:STRING=-fPIC -g -O3 \
+ -D CMAKE_C_FLAGS:STRING=-fPIC -g -O3 \
+ -D CMAKE_FORTRAN_FLAGS:STRING=-g -O5 \
+ -D Trilinos_EXTRA_LINK_FLAGS:STRING=-lgfortran \
+ -D CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE \
+ -D Trilinos_VERBOSE_CONFIGURE:BOOL=FALSE \
+ -D TPL_ENABLE_MPI:BOOL=ON \
+ -D BUILD_SHARED_LIBS:BOOL=ON"
+
+package_specific_register () {
+ export TRILINOS_DIR=${INSTALL_PATH}
+}
+
--- /dev/null
+# cygwin
+#
+# This build script assumes that you have several packages already
+# installed:
+#
+# subversion, git, development-tools (gcc, g++, autoconf, automake, cmake)
+# openmpi, blas, lapack (development packages also!)
+# Please also make sure, that in your local.cfg only the indended packages
+# are switched ON.
+#
+# Issues:
+# - p4est will NOT compile without errors
+# - boost 1.55 will NOT compile without errors
+#
+# Untested:
+# - MPI
+# - Trilinos, PetSC, Slepc
+#
+##
+
+#
+# Define the packages this platform needs
+PACKAGES=(
+#once:boost
+#once:hdf5
+#once:p4est
+#once:trilinos
+#once:petsc
+#once:slepc
+dealii
+)
+
--- /dev/null
+# Fedora 19
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y svn \
+# @development-tools gcc-c++ cmake \
+# blas blas-devel lapack lapack-devel \
+# doxygen graphviz graphviz-devel qt-devel '
+#
+# ARPACK system packages: arpack arpack-devel
+# METIS system packages: metis metis-devel
+#
+##
+
+#
+# Define the packages this platform needs
+PACKAGES=(
+#once:boost
+#once:hdf5
+once:p4est
+once:trilinos
+once:petsc
+once:slepc
+dealii
+)
+
--- /dev/null
+# Fedora 20
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y svn \
+# @development-tools gcc-c++ cmake \
+# blas blas-devel lapack lapack-devel \
+# doxygen graphviz graphviz-devel qt-devel '
+#
+# ARPACK system packages: arpack arpack-devel
+# METIS system packages: metis metis-devel
+#
+##
+
+#
+# Define the packages this platform needs
+PACKAGES=(
+#once:boost
+once:hdf5
+once:p4est
+once:trilinos
+once:petsc
+once:slepc
+dealii
+)
+
--- /dev/null
+# openSUSE 12
+#
+# This build script assumes that you have several packages already
+# installed via openSUSE's zypper using the following commands:
+#
+# > su -c 'zypper -n in -t pattern devel_basis devel_C_C++ devel_qt4'
+#
+# > su -c 'zypper -n in Modules gcc-fortran subversion git cmake \
+# openmpi openmpi-devel splint blas-devel lapack-devel \
+# doxygen graphviz graphviz-devel'
+#
+# Then reboot and run candi again.
+#
+# NOTE: There is a small "bug" in openmpi 1.6, you must set the following
+# softlink to run mpi-programs:
+# > su -c 'mkdir /usr/lib64/mpi/gcc/openmpi/etc'
+#
+# > su -c 'ln -s /etc/openmpi-default-hostfile \
+# /usr/lib64/mpi/gcc/openmpi/etc/openmpi-default-hostfile'
+##
+
+#
+# Define the packages this platform needs
+PACKAGES=(
+#once:boost
+once:hdf5
+once:p4est
+once:trilinos
+once:petsc
+once:slepc
+dealii
+)
+
--- /dev/null
+# openSUSE 13
+#
+# This build script assumes that you have several packages already
+# installed via openSUSE's zypper using the following commands:
+#
+# > su -c 'zypper -n in -t pattern devel_basis devel_C_C++ devel_qt4'
+#
+# and
+#
+# > su -c 'zypper -n in Modules gcc-fortran subversion git cmake \
+# openmpi openmpi-devel splint blas-devel lapack-devel \
+# doxygen graphviz graphviz-devel'
+#
+# Then reboot and run candi again.
+##
+
+#
+# Define the packages this platform needs
+PACKAGES=(
+#once:boost
+once:hdf5
+once:p4est
+once:trilinos
+once:petsc
+once:slepc
+dealii
+)
+
--- /dev/null
+# RHEL 6
+
+# This build script assumes that you have several packages already
+# installed via RHEL's yum using the following command:
+#
+# su -c 'yum install -y svn git wget \
+# @development-tools gcc-c++ cmake \
+# blas blas-devel lapack lapack-devel \
+# doxygen graphviz graphviz-devel qt-devel '
+#
+# ARPACK: arpack arpack-devel
+# METIS: metis metis-devel
+#
+##
+
+#
+# Define the packages this platform needs
+PACKAGES=(
+once:hdf5
+once:p4est
+once:trilinos
+once:petsc
+once:slepc
+dealii
+)
--- /dev/null
+# ubuntu 13
+#
+# This build script assumes that you have several packages already
+# installed via ubuntu's apt-get using the following commands:
+#
+# > su -c 'apt-get install build-essential automake autoconf \
+# gfortran openmpi1.6 cmake subversion git splint splint-dev \
+# blas libblas-dev lapack liblapack-dev libblas3gf liblapack3gf \
+# tcl tcl-dev environment-modules'
+#
+# Then reboot and run candi again.
+##
+
+#
+# Define the packages this platform needs
+PACKAGES=(
+#once:boost
+once:hdf5
+once:p4est
+once:trilinos
+once:petsc
+once:slepc
+dealii
+)
+
--- /dev/null
+VERSION=${GCC}
+NAME=gcc-${VERSION}
+SOURCE=ftp://ftp.fu-berlin.de/unix/languages/gcc/releases/${NAME}/
+PACKING=.tar.gz
+CHECKSUM=ignore
+BUILDCHAIN=autotools
+
+if [ ${GCC} = "4.7.3" ]; then
+ CHECKSUM=d518eace24a53aef59c2c69498ea4989
+elif [ ${GCC} = "4.8.2" ]; then
+ CHECKSUM=deca88241c1135e2ff9fa5486ab5957b
+fi
+
+MODULEFILE_PATH=${INSTALL_PATH}/conf/modulefiles/compiler/gcc
+CONFIG_FILE=${MODULEFILE_PATH}/${VERSION}
+
+# **********************************************************************************
+package_specific_conf() {
+ # Generate modulefile
+
+ mkdir -p ${MODULEFILE_PATH}
+ CONFIG_FILE=${MODULEFILE_PATH}/${NAME}
+ rm -f $CONFIG_FILE
+ echo "#%Module 1.0
+#
+# GNU/GCC ${VERSION} Compiler modulefile
+#
+
+proc ModulesHelp { } {
+ puts stderr "\tThis module adds GNU ${VERSION} Compiler."
+}
+conflict compiler
+
+module-whatis "Sets up the GNU ${VERSION} Compiler environment."
+
+prepend-path PATH ${INSTALL_PATH}/bin
+prepend-path MANPATH ${INSTALL_PATH}/share/man
+prepend-path INFOPATH ${INSTALL_PATH}/share/info
+prepend-path LD_LIBRARY_PATH ${INSTALL_PATH}/lib64
+prepend-path LD_RUN_PATH ${INSTALL_PATH}/lib64
+
+setenv LIBDIR ${INSTALL_PATH}/lib64
+setenv LDFLAGS \"-Wl,-rpath -Wl,${INSTALL_PATH}/lib64\"
+
+setenv CC ${INSTALL_PATH}/bin/gcc
+setenv CXX ${INSTALL_PATH}/bin/g++
+setenv FC ${INSTALL_PATH}/bin/gfortran
+setenv FF ${INSTALL_PATH}/bin/gfortran
+" >> $CONFIG_FILE
+
+ echo
+ echo "${NAME} has now been installed in"
+ echo
+ cecho ${GOOD} " ${INSTALL_PATH}"
+ echo
+ echo "To update your environment variables, use the created modulefile:"
+ echo
+ cecho ${GOOD} " $CONFIG_FILE"
+ echo
+}
+
--- /dev/null
+# RHEL 6
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y \
+# @development-tools gcc-c++ \
+# glibc glibc-devel glibc.i686 glibc-devel.i686 \
+# libmpc libmpc-devel mpfr mpfr-devel gmp gmp-devel \
+# gzip bzip2 '
+#
+##
+
+# Define the packages this platform needs
+PACKAGES=(
+once:gcc
+)
+
--- /dev/null
+# Global configuration variables go here. You will want to tweak this
+# file to suit your needs. If you want to keep local changes that are
+# not overwritten by repository updates, those can be written
+# to local.cfg instead (entries there will override those in this file).
+
+# Meta-project to build
+PROJECT=DTM++.toolbox
+CLEAN_BUILD=false
+COMPILER=native-openmpi
+
+# How many processes would you like to build using?
+PROCS=1
+
+# Prefix directory
+PREFIX_PATH=~/apps/candi
+
+# Where do you want the downloaded source files to go?
+DOWNLOAD_PATH=${PREFIX_PATH}/src
+
+# Where do you want to unpack source files to go?
+UNPACK_PATH=${PREFIX_PATH}/unpack
+
+# Where do you want the build files to go?
+BUILD_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}-build
+
+# Where do you want the compiled software installed?
+INSTALL_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}
+
+# Would you like to build stable versions of projects?
+# If STABLE_BUILD=false, then the development version of deal.II will be
+# installed.
+STABLE_BUILD=true
+#STABLE_BUILD=false
+
--- /dev/null
+# Global configuration variables go here. You will want to tweak this
+# file to suit your needs. If you want to keep local changes that are
+# not overwritten by repository updates, those can be written
+# to local.cfg instead (entries there will override those in this file).
+
+# Meta-project to build
+PROJECT=FEniCS
+CLEAN_BUILD=false
+COMPILER=native-openmpi
+
+PREFIX_PATH=~/apps/candi
+
+# Where do you want the downloaded source files to go?
+DOWNLOAD_PATH=${PREFIX_PATH}/src
+
+# Where do you want to unpack source files to go?
+UNPACK_PATH=${PREFIX_PATH}/unpack/${PROJECT}
+
+# Where do you want the build files to go?
+BUILD_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}-build
+
+# Where do you want the compiled software installed?
+INSTALL_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}
+
+# How many processes would you like to build using?
+PROCS=1
+
+# Would you like to build stable versions of projects?
+STABLE_BUILD=true
+# Would you like to use snapshots when using STABLE_BUILD=false?
+USE_SNAPSHOTS=false
--- /dev/null
+# Global configuration variables go here. You will want to tweak this
+# file to suit your needs. If you want to keep local changes that are
+# not overwritten by repository updates, those can be written
+# to local.cfg instead (entries there will override those in this file).
+
+# Meta-project to build
+PROJECT=deal.II
+CLEAN_BUILD=false
+
+#########################################################################
+#Choose components of deal.II
+DEAL_CONFOPTS=" \
+-D CMAKE_BUILD_TYPE=DebugRelease \
+-D DEAL_II_COMPONENT_DOCUMENTATION:BOOL=OFF \
+-D DEAL_II_WITH_ARPACK:BOOL=OFF \
+-D DEAL_II_WITH_BOOST:BOOL=ON \
+-D DEAL_II_WITH_FUNCTIONPARSER:BOOL=ON \
+-D DEAL_II_WITH_LAPACK:BOOL=ON \
+-D DEAL_II_WITH_METIS:BOOL=OFF \
+-D DEAL_II_WITH_MUMPS:BOOL=OFF \
+-D DEAL_II_WITH_MPI:BOOL=ON \
+-D DEAL_II_WITH_NETCDF:BOOL=OFF \
+-D DEAL_II_WITH_P4EST:BOOL=ON \
+-D DEAL_II_WITH_PETSC:BOOL=ON \
+-D DEAL_II_WITH_SLEPC:BOOL=ON \
+-D DEAL_II_WITH_THREADS:BOOL=OFF \
+-D DEAL_II_WITH_TRILINOS:BOOL=ON \
+-D DEAL_II_WITH_UMFPACK:BOOL=ON \
+-D DEAL_II_WITH_ZLIB:BOOL=ON \
+-D DEAL_II_WITH_HDF5:BOOL=ON \
+"
+
+# Please add the following path(es) to DEAL_CONFOPTS ahead,
+# if you wish to use (self-compiled) versions of them together
+# with deal.II.
+# Make sure, that the coinciding option is setted to "ON".
+# If you want to use the packages from your system, you
+# may not set the variables (usually deal.II is smart enough
+# to recognise them automatically).
+# If you want to install the packages using CANDI,
+# simply set the option to ON and do NOT specify the path,
+# this will be done automatically elsewhere.
+#
+#-D ARPACK_DIR= \
+#-D METIS_DIR= \
+#-D MUMPS_DIR= \
+#-D P4EST_DIR= \
+#-D TRILINOS_DIR= \
+#-D HDF5_DIR= \
+
+#########################################################################
+# Prefix directory
+PREFIX_PATH=~/apps/candi
+COMPILER=native-openmpi
+
+# Where do you want the downloaded source files to go?
+DOWNLOAD_PATH=${PREFIX_PATH}/src
+
+# Where do you want to unpack source files to go?
+UNPACK_PATH=${PREFIX_PATH}/unpack
+
+# Where do you want the build files to go?
+BUILD_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}-build
+
+# Where do you want the compiled software installed?
+INSTALL_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}
+
+# How many processes would you like to build using?
+PROCS=1
+
+# Would you like to build stable versions of projects?
+# If STABLE_BUILD=false, then the development version of deal.II will be
+# installed.
+STABLE_BUILD=true
--- /dev/null
+# Global configuration variables go here. You will want to tweak this
+# file to suit your needs. If you want to keep local changes that are
+# not overwritten by repository updates, those can be written
+# to local.cfg instead (entries there will override those in this file).
+
+# Meta-project to build
+PROJECT=gcc
+#VERSION=4.7.3
+VERSION=4.8.2
+
+# How many processes would you like to build using?
+PROCS=1
+
+PREFIX_PATH=~/appl/candi
+
+# Where do you want the downloaded source files to go?
+DOWNLOAD_PATH=${PREFIX_PATH}/src
+
+# Where do you want to unpack source files to go?
+UNPACK_PATH=${PREFIX_PATH}/unpack
+
+# Where do you want the build files to go?
+BUILD_PATH=${PREFIX_PATH}/compiler/${PROJECT}-${VERSION}-build
+
+# Where do you want the compiled software installed?
+INSTALL_PATH=${PREFIX_PATH}/compiler/${PROJECT}/${VERSION}
+
+GCC=${VERSION}
+
--- /dev/null
+# Global configuration variables go here. You will want to tweak this
+# file to suit your needs. If you want to keep local changes that are
+# not overwritten by repository updates, those can be written
+# to local.cfg instead (entries there will override those in this file).
+
+# Meta-project to build
+PROJECT=mpi
+#COMPILER=llvm
+COMPILER=gcc-4.8.2
+
+# How many processes would you like to build using?
+PROCS=1
+
+PREFIX_PATH=~/apps/candi
+
+# Where do you want the downloaded source files to go?
+DOWNLOAD_PATH=${PREFIX_PATH}/src
+
+# Where do you want the build files to go?
+BUILD_PATH=${PREFIX_PATH}/${PROJECT}/${COMPILER}-build
+
+# Where do you want to unpack source files to go?
+UNPACK_PATH=${PREFIX_PATH}/unpack
+
+# Where do you want the compiled software installed?
+INSTALL_PATH=${PREFIX_PATH}/compiler/${PROJECT}
+
--- /dev/null
+local-DTM++.toolbox.cfg
\ No newline at end of file
--- /dev/null
+VERSION=3.0.4
+NAME=mpich-${VERSION}
+SOURCE=http://www.mpich.org/static/downloads/${VERSION}/
+PACKING=.tar.gz
+CHECKSUM=9c5d5d4fe1e17dd12153f40bc5b6dbc0
+
+BUILDCHAIN=autotools
+PROCS=1
+CONFOPTS="-q CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC FCFLAGS=-fPIC"
+INSTALL_PATH=${INSTALL_PATH}/${COMPILER}/${NAME}
+
+MODULEFILE_PATH=${INSTALL_PATH}/conf/modulefiles/compiler/mpi/${COMPILER}
+CONFIG_FILE=${MODULEFILE_PATH}/${NAME}
+
+# **********************************************************************************
+package_specific_conf() {
+ # Generate modulefile
+
+ mkdir -p ${MODULEFILE_PATH}
+ rm -f $CONFIG_FILE
+ echo "#%Module 1.0
+#
+# ${NAME} against ${COMPILER}
+#
+
+conflict compiler
+
+prepend-path PATH ${PATH}
+prepend-path MANPATH ${MANPATH}
+prepend-path INFOPATH ${INFOPATH}
+prepend-path LD_LIBRARY_PATH ${LD_LIBRARY_PATH}
+prepend-path LD_RUN_PATH ${LD_RUN_PATH}
+
+setenv LIBDIR ${LIBDIR}
+setenv LDFLAGS \"${LDFLAGS}\"
+
+prepend-path PATH ${INSTALL_PATH}/bin
+prepend-path LD_LIBRARY_PATH ${INSTALL_PATH}/lib
+prepend-path MANPATH ${INSTALL_PATH}/share/man
+
+setenv MPI_BIN ${INSTALL_PATH}/bin
+setenv MPI_SYSCONFIG ${INSTALL_PATH}/etc
+setenv MPI_INCLUDE ${INSTALL_PATH}/include
+setenv MPI_LIB ${INSTALL_PATH}/lib
+setenv MPI_MAN ${INSTALL_PATH}/share/man
+setenv MPI_COMPILER mpich-x86_64
+setenv MPI_SUFFIX _mpich
+setenv MPI_HOME ${INSTALL_PATH}
+
+setenv CC ${INSTALL_PATH}/bin/mpicc
+setenv CXX ${INSTALL_PATH}/bin/mpic++
+setenv FC ${INSTALL_PATH}/bin/mpif90
+setenv FF ${INSTALL_PATH}/bin/mpif77
+setenv F90 ${INSTALL_PATH}/mpif90
+setenv F77 ${INSTALL_PATH}/bin/mpif77
+" >> $CONFIG_FILE
+
+ echo
+ echo "${NAME} has now been installed in"
+ echo
+ cecho ${GOOD} " ${INSTALL_PATH}"
+ echo
+ echo "To update your environment variables, use the created modulefile:"
+ echo
+ cecho ${GOOD} " $CONFIG_FILE"
+ echo
+}
+
--- /dev/null
+VERSION=1.4.1p1
+NAME=mpich2-${VERSION}
+SOURCE=http://www.mpich.org/static/downloads/${VERSION}/
+PACKING=.tar.gz
+CHECKSUM=b470666749bcb4a0449a072a18e2c204
+
+BUILDCHAIN=autotools
+PROCS=1
+CONFOPTS="-q CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC FCFLAGS=-fPIC"
+INSTALL_PATH=${INSTALL_PATH}/${COMPILER}/${NAME}
+
+MODULEFILE_PATH=${INSTALL_PATH}/conf/modulefiles/compiler/mpi/${COMPILER}
+CONFIG_FILE=${MODULEFILE_PATH}/${NAME}
+
+# **********************************************************************************
+package_specific_conf() {
+ # Generate modulefile
+
+ mkdir -p ${MODULEFILE_PATH}
+ rm -f $CONFIG_FILE
+ echo "#%Module 1.0
+#
+# ${NAME} against ${COMPILER}
+#
+
+conflict compiler
+
+prepend-path PATH ${PATH}
+prepend-path MANPATH ${MANPATH}
+prepend-path INFOPATH ${INFOPATH}
+prepend-path LD_LIBRARY_PATH ${LD_LIBRARY_PATH}
+prepend-path LD_RUN_PATH ${LD_RUN_PATH}
+
+setenv LIBDIR ${LIBDIR}
+setenv LDFLAGS \"${LDFLAGS}\"
+
+prepend-path PATH ${INSTALL_PATH}/bin
+prepend-path LD_LIBRARY_PATH ${INSTALL_PATH}/lib
+prepend-path MANPATH ${INSTALL_PATH}/share/man
+
+setenv MPI_BIN ${INSTALL_PATH}/bin
+setenv MPI_SYSCONFIG ${INSTALL_PATH}/etc
+setenv MPI_INCLUDE ${INSTALL_PATH}/include
+setenv MPI_LIB ${INSTALL_PATH}/lib
+setenv MPI_MAN ${INSTALL_PATH}/share/man
+setenv MPI_COMPILER mpich-x86_64
+setenv MPI_SUFFIX _mpich
+setenv MPI_HOME ${INSTALL_PATH}
+
+setenv CC ${INSTALL_PATH}/bin/mpicc
+setenv CXX ${INSTALL_PATH}/bin/mpic++
+setenv FC ${INSTALL_PATH}/bin/mpif90
+setenv FF ${INSTALL_PATH}/bin/mpif77
+setenv F90 ${INSTALL_PATH}/mpif90
+setenv F77 ${INSTALL_PATH}/bin/mpif77
+" >> $CONFIG_FILE
+
+ echo
+ echo "${NAME} has now been installed in"
+ echo
+ cecho ${GOOD} " ${INSTALL_PATH}"
+ echo
+ echo "To update your environment variables, use the created modulefile:"
+ echo
+ cecho ${GOOD} " $CONFIG_FILE"
+ echo
+}
+
--- /dev/null
+VERSION=1.6.5
+NAME=openmpi-${VERSION}
+SOURCE=http://www.open-mpi.org/software/ompi/v1.6/downloads/
+PACKING=.tar.bz2
+CHECKSUM=03aed2a4aa4d0b27196962a2a65fc475
+
+BUILDCHAIN=autotools
+PROCS=1
+#CONFOPTS="--disable-dlopen"
+TARGETS=('' all install)
+
+MODULEFILE_PATH=${INSTALL_PATH}/conf/modulefiles/compiler/mpi/${COMPILER}
+CONFIG_FILE=${MODULEFILE_PATH}/${NAME}
+
+# **********************************************************************************
+package_specific_conf() {
+ # Generate modulefile
+
+ mkdir -p ${MODULEFILE_PATH}
+ CONFIG_FILE=${MODULEFILE_PATH}/${NAME}
+ rm -f $CONFIG_FILE
+ echo "#%Module 1.0
+#
+# ${NAME} against ${COMPILER}
+#
+
+prepend-path PATH ${PATH}
+prepend-path MANPATH ${MANPATH}
+prepend-path INFOPATH ${INFOPATH}
+prepend-path LD_LIBRARY_PATH ${LD_LIBRARY_PATH}
+prepend-path LD_RUN_PATH ${LD_RUN_PATH}
+
+setenv LIBDIR ${LIBDIR}
+setenv LDFLAGS \"${LDFLAGS}\"
+
+prepend-path PATH ${INSTALL_PATH}/${COMPILER}/${NAME}/bin
+prepend-path LD_LIBRARY_PATH ${INSTALL_PATH}/${COMPILER}/${NAME}/lib
+prepend-path MANPATH ${INSTALL_PATH}/${COMPILER}/${NAME}/share/man
+
+setenv MPI_BIN ${INSTALL_PATH}/${COMPILER}/${NAME}/bin
+setenv MPI_SYSCONFIG ${INSTALL_PATH}/${COMPILER}/${NAME}/etc
+setenv MPI_INCLUDE ${INSTALL_PATH}/${COMPILER}/${NAME}/include
+setenv MPI_LIB ${INSTALL_PATH}/${COMPILER}/${NAME}/lib
+setenv MPI_MAN ${INSTALL_PATH}/${COMPILER}/${NAME}/share/man
+setenv MPI_COMPILER openmpi-x86_64
+setenv MPI_SUFFIX _openmpi
+setenv MPI_HOME ${INSTALL_PATH}/${COMPILER}/${NAME}
+
+setenv CC ${INSTALL_PATH}/${COMPILER}/${NAME}/bin/mpicc
+setenv CXX ${INSTALL_PATH}/${COMPILER}/${NAME}/bin/mpic++
+setenv FC ${INSTALL_PATH}/${COMPILER}/${NAME}/bin/mpif90
+setenv FF ${INSTALL_PATH}/${COMPILER}/${NAME}/bin/mpif77
+setenv F90 ${INSTALL_PATH}/${COMPILER}/${NAME}/mpif90
+setenv F77 ${INSTALL_PATH}/${COMPILER}/${NAME}/bin/mpif77
+" >> $CONFIG_FILE
+
+ echo
+ echo "${NAME} has now been installed in"
+ echo
+ cecho ${GOOD} " ${INSTALL_PATH}/${COMPILER}/${NAME}"
+ echo
+ echo "To update your environment variables, use the created modulefile:"
+ echo
+ cecho ${GOOD} " $CONFIG_FILE"
+ echo
+}
+
--- /dev/null
+# Fedora 19
+
+# This build script assumes that you have several packages already
+# installed via Fedora's yum using the following command:
+#
+# su -c 'yum install -y svn \
+# @development-tools gcc-c++ cmake \
+# blas blas-devel lapack lapack-devel \
+# doxygen graphviz graphviz-devel qt-devel'
+#
+##
+
+# Define the packages this platform needs
+PACKAGES=(
+dealii
+)
--- /dev/null
+# Fedora 20
+
+# This build script assumes that you have installed
+# an appropriate C/C++ and Fortran compiler.
+#
+##
+
+# Define the packages this platform needs
+PACKAGES=(
+#mpich2
+#mpich
+openmpi
+)
--- /dev/null
+# Fedora 20
+
+# This build script assumes that you have installed
+# an appropriate C/C++ and Fortran compiler.
+#
+##
+
+# Define the packages this platform needs
+PACKAGES=(
+once:mpich2
+once:mpich
+once:openmpi
+)
--- /dev/null
+# RHEL 6
+
+# This build script assumes that you have installed
+# an appropriate C/C++ and Fortran compiler.
+#
+# su -c 'yum install -y libtool-ltdl libtool-ltdl-devel'
+##
+
+# Define the packages this platform needs
+PACKAGES=(
+once:mpich2
+#once:mpich
+#once:openmpi
+)
--- /dev/null
+#!/usr/bin/env bash
+
+# This is a utility script to clean temporary files originating from
+# Emacs and elsewhere
+
+rm `find .. -name '*~' | xargs`
\ No newline at end of file
--- /dev/null
+bzr log -n0 | grep 'committer:' | sed -e 's/^.*committer: //g' \
+| sed -e 's/<.*>//g' | sed 's/[ \t]*$//' \
+| sed -e 's/garth.*/Garth N. Wells/g' \
+| sed -e 's/gnw20.*/Garth N. Wells/g' \
+| sed -e 's/harish.*/Harish Narayanan/g' \
+| sed -e 's/hnarayan.*/Harish Narayanan/g' \
+| sed -e 's/ilmar.*/Ilmar Wilbers/g' \
+| sed -e 's/Joachim B Haga/Joachim B. Haga/g' \
+| sed -e 's/logg.*/Anders Logg/g' \
+| sort | uniq -c | sort -k 2,2n -r | gawk '{print $2" "$3" "$4}'
\ No newline at end of file
--- /dev/null
+#!/usr/bin/env bash
+
+# Set default values of some useful variables
+export VERSION="1.0-beta" # Latest released Dorsal version
+export PREFIX=${HOME}/local # Default download/install location
+export ORIG_DIR=`pwd` # Store original directory, so we can
+ # return to it when finished
+
+# Colours for progress and error reporting
+BAD="\033[1;31m"
+GOOD="\033[1;32m"
+BOLD="\033[1m"
+
+### Define helper functions ###
+
+cecho() {
+ # Display messages in a specified colour
+ COL=$1; shift
+ echo -e "${COL}$@\033[0m"
+}
+
+default () {
+ # Export a variable, if it is not already set
+ VAR="${1%%=*}"
+ VALUE="${1#*=}"
+ eval "[[ \$$VAR ]] || export $VAR='$VALUE'"
+}
+
+# Make a directory name more readable by replacing homedir with ~
+prettify_dir() {
+ echo ${1/#$HOME\//~\/}
+}
+
+# Make a directory name entered with ~ for the homedir more portable
+unprettify_dir() {
+ echo ${1/#~\//$HOME\/}
+}
+
+# Fetch the latest released version of Dorsal
+fetch_dorsal() {
+ default TMPDIR=/tmp
+ cd ${TMPDIR}
+ cecho ${GOOD} "Fetching the FEniCS installer files"
+ wget -N http://launchpad.net/dorsal/trunk/${VERSION}/+download/dorsal-${VERSION}.tar.bz2
+ if [ -d "dorsal-${VERSION}" ]
+ then
+ rm -fr dorsal-${VERSION}
+ fi
+ tar -xjf dorsal-${VERSION}.tar.bz2
+ cd dorsal-${VERSION}
+}
+
+# Set up the build configuration (using some sensible defaults)
+cfg_dorsal() {
+ echo "PROJECT=FEniCS" > dorsal.cfg
+ echo "DOWNLOAD_PATH=${PREFIX}/src" >> dorsal.cfg
+ echo "INSTALL_PATH=${PREFIX}" >> dorsal.cfg
+ echo "PROCS=2" >> dorsal.cfg
+ echo "STABLE_BUILD=true" >> dorsal.cfg
+}
+
+# Run the build script
+run_dorsal() {
+ ./dorsal.sh
+ cd ${ORIG_DIR}
+}
+
+
+while :
+do
+
+ SELECTION1="Install FEniCS"
+ SELECTION2="Change installation path [$(prettify_dir ${PREFIX})]"
+ SELECTION3="Exit installer"
+
+ if [ -x /usr/bin/zenity ]; then
+
+ SELECTION=`/usr/bin/zenity \
+ --width 350 --height 225 \
+ --title "FEniCS Installer" \
+ --text "Welcome to the FEniCS Installer" \
+ --list --radiolist \
+ --column Select \
+ --column Action \
+ True "${SELECTION1}" \
+ False "${SELECTION2}" \
+ False "${SELECTION3}"`
+
+ case ${SELECTION} in
+ "${SELECTION1}")
+ fetch_dorsal
+ cfg_dorsal
+ run_dorsal
+ ;;
+ "${SELECTION2}")
+ PREFIX=`zenity --title 'Select installation path' --file-selection --directory`
+ ;;
+ "${SELECTION3}")
+ cd ${ORIG_DIR}
+ exit 0
+ ;;
+ *)
+ echo "default"
+ ;;
+ esac
+
+ else
+
+ clear
+ echo "-------------------------------------------------------------------------------"
+ echo " Welcome to the FEniCS installer"
+ echo "-------------------------------------------------------------------------------"
+ echo ""
+ echo " [1] ${SELECTION1}"
+ echo " [2] ${SELECTION2}"
+ echo " [3] ${SELECTION3}"
+ echo ""
+ echo "-------------------------------------------------------------------------------"
+ echo ""
+ echo -n "What would you like to do? [1-3]: "
+ read OPTION
+
+ case ${OPTION} in
+ 1) fetch_dorsal
+ cfg_dorsal
+ run_dorsal
+ ;;
+ 2) echo "Please enter your preferred installation path: ";
+ read PREFIX
+ PREFIX=$(unprettify_dir ${PREFIX})
+ ;;
+ 3) cd ${ORIG_DIR}
+ exit 0
+ ;;
+ *) ;;
+ esac
+ echo ""
+
+ fi
+
+done
--- /dev/null
+#!/usr/bin/env bash
+
+# This is a utility script to check whether the numerous defined
+# packages in Dorsal are used or not. It is used sporadically to cull
+# unused packages.
+
+# Colours for progress and error reporting
+BAD="\033[1;31m"
+GOOD="\033[1;32m"
+
+cecho() {
+ # Display messages in a specified colour
+ COL=$1; shift
+ echo -e "${COL}$@\033[0m"
+}
+
+for packagefull in ../FEniCS/packages/*.package
+do
+ package=`basename ${packagefull} .package`
+ if [[ "${package}" != *stable ]]
+ then
+ grep -q ${package} ../FEniCS/platforms/*/*.platform \
+ && cecho ${GOOD} ${package} "package is used." \
+ || cecho ${BAD} ${package} "package is not used."
+ fi
+done
\ No newline at end of file
projects / candi.git / commitdiff