-# -----------------------------------------------------------------
-# Configuration and build system description for deal.II
-#
-# This file is subject to QPL and may not be distributed
-# without copyright and license information. Please refer
-# to the file deal.II/doc/license.html for the text and
-# further information on this license.
-#
-# Copyright (C) 2012 by the deal.II authors
-#
-# $Id: aclocal.m4 24924 2012-01-25 12:35:17Z kormann $
+PROJECT (deal.II)
+set (VERSION "8.0.pre")
+CMAKE_MINIMUM_REQUIRED (VERSION 2.8)
+SET (CMAKE_CXX_FLAGS "-std=c++0x -D_REENTRANT -fPIC -O2 -march=native -Wall -Wfatal-errors -pedantic")
-# ###########################################################
-# Configuration of deal.II #
-# ###########################################################
+INCLUDE_DIRECTORIES(
+ "${CMAKE_SOURCE_DIR}/contrib/tbb/tbb30_104oss/include" #TODO
+ "${CMAKE_SOURCE_DIR}/include/"
+ )
-
-message ("")
-message ("=========================================")
-message ("== Configuring deal.II ==")
-message ("=========================================")
-message ("")
-
-message ("------ Configuring the compilers")
-
-cmake_minimum_required(VERSION 2.8)
-project(deal.II)
-
-
-# -----------------------------------------------------------
-# Find a few programs that we need throughout this script and
-# deal.II.
-# -----------------------------------------------------------
-
-message ("")
-message ("------ Searching for external programs")
-find_program (perl perl)
-if (${perl} STREQUAL perl-NOTFOUND)
- message (FATAL_ERROR "** Searching for perl: not found")
-else()
- message ("-- Searching for perl: " ${perl})
-endif()
-
-find_program (doxygen doxygen)
-if (${doxygen} STREQUAL doxygen-NOTFOUND)
- message (FATAL_ERROR "** Searching for doxygen: not found")
-else()
- message ("-- Searching for doxygen: " ${doxygen})
-endif()
-
-
-
-# ###########################################################
-# Build system of deal.II #
-# ###########################################################
-
-# common defines
-include_directories(include)
-include_directories(contrib/boost-1.46.1/include)
-include_directories(contrib/tbb/tbb30_104oss/include)
-include_directories(contrib)
-
-set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DHAVE_CONFIG_H -DHAVE_ISNAN -ggdb -DBOOST_NO_HASH -DBOOST_NO_SLIST -DDEBUG -Wall -W -Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch -ftemplate-depth-128 -Wno-long-long -std=c++0x -Wa,--compress-debug-sections -pthread -D_REENTRANT -fPIC")
-
-set (BUILD_SHARED_LIBS on)
-
-
-# define what's needed for the program that builds the .inst files from
-# the .inst.in files
-set (EXPAND_INSTANTIATIONS_SOURCES common/scripts/expand_instantiations.cc)
-add_executable (expand_instantiations
- ${EXPAND_INSTANTIATIONS_SOURCES})
-get_target_property (expand_instantiations_exe
- expand_instantiations
- LOCATION)
-
-
-# we then need to describe how we can build the .inst files from the
-# .inst.in files
-file (GLOB_RECURSE inst_in_files source/*.inst.in)
-foreach (inst_file ${inst_in_files})
- add_custom_command (OUTPUT ${PROJECT_BINARY_DIR}/${inst_file}
- DEPENDS expand_instantiations ${inst_file}.in
- COMMAND ${expand_instantiations_exe}
- ARGS common/template-arguments < ${inst_file}.in
- > ${PROJECT_BINARY_DIR}/${inst_file})
- set (inst_files ${inst_files} ${PROJECT_BINARY_DIR}/${inst_file})
-endforeach()
-
-# then do the same for the .inst.pl files
-file (GLOB_RECURSE inst_pl_files source/*.inst.pl)
-foreach (inst_file ${inst_pl_files})
- add_custom_command (OUTPUT ${PROJECT_BINARY_DIR}/${inst_file}
- DEPENDS ${inst_file}.pl
- COMMAND ${perl}
- ARGS -I common ${inst_file}.pl
- > ${PROJECT_BINARY_DIR}/${inst_file})
- set (inst_files ${inst_files} ${PROJECT_BINARY_DIR}/${inst_file})
-endforeach ()
-
-
-# then define what's needed for the deal.II library
-file (GLOB_RECURSE cc_files source/*.cc)
-add_library(deal_II ${inst_files} ${cc_files})
+# ADD_SUBDIRECTORY(contrib)
+ADD_SUBDIRECTORY(source)
+++ /dev/null
-# $Id$
-# Copyright by the deal.II authors, 1998, 1999, 2000, 2001, 2002, 2010, 2011, 2012
-
-
-ifneq ($(CLEAN),yes)
-
-# deal.II top level directory
-D=..
-
-
-# get options which hold for all files of the project
-include $D/common/Make.global_options
-
-# top level targets
-default all: debug optimized
-
-
-# list the directories and the various kinds of files, the ones with the
-# largest compile jobs first so that 'make -j N' saturates many processors
-# also towards the end of compiling (e.g. numerics/vectors.cc takes several
-# minutes to compile...)
-all-dirs := numerics fe dofs lac base grid hp multigrid distributed
-
-cc-files := $(shell for i in $(all-dirs) ; do echo $D/source/$$i/*.cc ; done)
-h-files := $(sort $(shell echo $D/include/deal.II/*/*.h))
-
-# build unique object file names
-tmp1 := $(shell echo $(cc-files) | $(PERL) -pi -e 's,$D/source/,,g; s,/,_,g;')
-o-files := $(addprefix $(LIBDIR)/optimized/, $(tmp1:.cc=.$(OBJEXT)) )
-go-files := $(addprefix $(LIBDIR)/debug/, $(tmp1:.cc=.$(OBJEXT)))
-
-
-debug: $(LIBDIR)/libdeal_II.g$(lib-suffix)
-optimized: $(LIBDIR)/libdeal_II$(lib-suffix)
-
-
-
-# rules how to generate object files from source files.
-$(LIBDIR)/debug/%.$(OBJEXT) :
- @echo "======================debug======$(MT)== $(<:$D/source/%=%)"
- @$(CXX) $(CXXFLAGS.g) -c $< -o $@
-$(LIBDIR)/optimized/%.$(OBJEXT) :
- @echo "======================optimized==$(MT)== $(<:$D/source/%=%)"
- @$(CXX) $(CXXFLAGS.o) -c $< -o $@
-
-
-
-%.inst : %.inst.in $D/common/template-arguments
- @echo "======================instantiate==== $(@F)"
- @$D/common/scripts/expand_instantiations $D/common/template-arguments < $< > $@ || exit 1
-
-%.inst : %.inst.pl $D/common/dealiitemplates.pm
- @echo "======================instantiate==== $(@F)"
- @perl -I $D/common/ $< > $@ || exit 1
-
-#Todo: remove this target after renaming files
-%.inst : %.pl $D/common/dealiitemplates.pm
- @echo "======================instantiate==== $(@F)"
- @perl -I $D/common/ $< > $@ || exit 1
-
-
-
-# there are extra .o file for the function parser and umfpack that we
-# need to link into out library
-ifeq ($(enable-parser),yes)
- extra-o-files := $(LIBDIR)/contrib/functionparser/fparser.$(OBJEXT)
- extra-g.o-files := $(LIBDIR)/contrib/functionparser/fparser.$(OBJEXT)
-endif
-
-ifeq ($(USE_CONTRIB_UMFPACK),yes)
- umfpack-files := $(sort $(shell echo $(LIBDIR)/contrib/umfpack/*.$(OBJEXT)))
- extra-o-files += $(umfpack-files)
- extra-g.o-files += $(umfpack-files)
-endif
-
-
-
-# in general, when linking shared libraries, we will want to link with
-# the underlying libs as well. AIX even requires this. on the other
-# hand, on DEC OSF with CXX this will fail with duplicate symbols, so
-# make sure that it doesn't happen on that system and that compiler
-ifneq ($(GXX-VERSION),compaq_cxx)
- # if we use HSL, then we need to link against libhsl.so.
- ifeq ($(USE_CONTRIB_HSL),yes)
- deplibs.g += $(lib-contrib-hsl)
- deplibs.o += $(lib-contrib-hsl)
- endif
-
- # same with PETSC
- ifeq ($(USE_CONTRIB_PETSC),yes)
- deplibs.g += $(lib-contrib-petsc.g) \
- $(call DEAL_II_RPATH,$(DEAL_II_PETSC_LIBDIR))
- deplibs.o += $(lib-contrib-petsc.o) \
- $(call DEAL_II_RPATH,$(DEAL_II_PETSC_LIBDIR))
- endif
-
- # same with SLEPC
- ifeq ($(USE_CONTRIB_SLEPC),yes)
- deplibs.g += $(lib-contrib-slepc) \
- $(call DEAL_II_RPATH,$(DEAL_II_SLEPC_LIBDIR))
- deplibs.o += $(lib-contrib-slepc) \
- $(call DEAL_II_RPATH,$(DEAL_II_SLEPC_LIBDIR))
- endif
-
- # same with TRILINOS
- ifeq ($(USE_CONTRIB_TRILINOS),yes)
- deplibs.g += $(lib-contrib-trilinos) \
- $(call DEAL_II_RPATH,$(DEAL_II_TRILINOS_LIBDIR))
- deplibs.o += $(lib-contrib-trilinos) \
- $(call DEAL_II_RPATH,$(DEAL_II_TRILINOS_LIBDIR))
- endif
-
- # same with MUMPS
- ifeq ($(USE_CONTRIB_MUMPS),yes)
- deplibs.g += $(lib-contrib-mumps)
- deplibs.o += $(lib-contrib-mumps)
- endif
-
- # and METIS
- ifeq ($(USE_CONTRIB_METIS),yes)
- deplibs.g += $(lib-contrib-metis)
- deplibs.o += $(lib-contrib-metis)
- endif
-
- # also link with TBB
- ifeq ($(enable-threads),yes)
- deplibs.g += $D/lib/libtbb_debug$(shared-lib-suffix)
- deplibs.o += $D/lib/libtbb$(shared-lib-suffix)
- endif
-
- # and p4est
- ifeq ($(USE_CONTRIB_P4EST),yes)
- deplibs.g += $(DEAL_II_P4EST_DIR)/DEBUG/$(DEAL_II_P4EST_LIBDIR_NAME)/libp4est$(shared-lib-suffix) \
- $(DEAL_II_P4EST_DIR)/DEBUG/$(DEAL_II_P4EST_LIBDIR_NAME)/libsc$(shared-lib-suffix) \
- $(call DEAL_II_RPATH,$(DEAL_II_P4EST_DIR)/DEBUG/$(DEAL_II_P4EST_LIBDIR_NAME))
- deplibs.o += $(DEAL_II_P4EST_DIR)/FAST/$(DEAL_II_P4EST_LIBDIR_NAME)/libp4est$(shared-lib-suffix) \
- $(DEAL_II_P4EST_DIR)/FAST/$(DEAL_II_P4EST_LIBDIR_NAME)/libsc$(shared-lib-suffix) \
- $(call DEAL_II_RPATH,$(DEAL_II_P4EST_DIR)/FAST/$(DEAL_II_P4EST_LIBDIR_NAME))
- endif
-
- # for cygwin and darwin, also llapack and such are necessary
- # we better link all libraries mentioned in $(LIBS)
- ifneq ($(findstring cygwin,$(TARGET))$(findstring darwin,$(TARGET)),)
- deplibs.g += $(LIBS)
- deplibs.o += $(LIBS)
- endif
-
-else
- deplibs.g =
- deplibs.o =
-endif
-
-
-# rules for static libraries
-$(LIBDIR)/libdeal_II.g$(static-lib-suffix): $(go-files) $(extra-g.o-files)
- @echo "=====deal.II==========debug======$(MT)== Linking library: $(@F)"
- @$(AR) ru $@ $(go-files) $(extra-g.o-files)
- @$(RANLIB) $@
-$(LIBDIR)/libdeal_II$(static-lib-suffix): $(o-files) $(extra-o-files)
- @echo "=====deal.II==========optimized==$(MT)== Linking library: $(@F)"
- @$(AR) ru $@ $(o-files) $(extra-o-files)
- @$(RANLIB) $@
-
-
-# Rules for shared libraries. these are much more difficult to link
-# because the linker has to update relocations etc. This requires
-# seeking back and forth in memory mapped files and is excruciatingly
-# slow on remotely mounted file systems. Consequently, we link in a
-# local file in the $TMPDIR directory, and only after the fact move
-# them to their final location
-$(LIBDIR)/libdeal_II.g$(shared-lib-suffix): $(go-files) $(extra-g.o-files)
- @echo "=====deal.II==========debug======$(MT)== Linking library: $(@F)"
- @rm -f $@
- @WORKFILE=`mktemp $${TMPDIR:-/tmp}/tmp.XXXXXXXXXX` && \
- $(SHLIBLD) $(LDFLAGS) $(SHLIBFLAGS) -o $$WORKFILE $(call DEAL_II_ADD_SONAME,deal_II.g) $(go-files) $(extra-g.o-files) $(deplibs.g) && \
- mv $$WORKFILE $(LIBDIR)/$(call DEAL_II_SHLIB_NAME,deal_II.g)
- @ln -f -s $(call DEAL_II_SHLIB_NAME,deal_II.g) $@
-
-$(LIBDIR)/libdeal_II$(shared-lib-suffix): $(o-files) $(extra-o-files)
- @echo "=====deal.II==========optimized==$(MT)== Linking library: $(@F)"
- @rm -f $@
- @WORKFILE=`mktemp $${TMPDIR:-/tmp}/tmp.XXXXXXXXXX` && \
- $(SHLIBLD) $(LDFLAGS) $(SHLIBFLAGS) -o $$WORKFILE $(call DEAL_II_ADD_SONAME,deal_II) $(o-files) $(extra-o-files) $(deplibs.o) && \
- mv $$WORKFILE $(LIBDIR)/$(call DEAL_II_SHLIB_NAME,deal_II)
- @ln -f -s $(call DEAL_II_SHLIB_NAME,deal_II) $@
-
-
-
-# generate a file that contains prototypes for BLAS and LAPACK functions
-../include/deal.II/lac/lapack_templates.h: ../include/deal.II/lac/lapack_templates.h.in \
- $D/common/scripts/lapack_templates.pl
- @echo ===================================== Remaking $@
- @$(PERL) $D/common/scripts/lapack_templates.pl ../include/deal.II/lac/lapack_templates.h.in > $@
-
-
-# A rule to make sure the various */Makefile.dep files have the right
-# dependencies on their source files. Use the opportunity to also ensure that
-# .inst and the lapack file are built before everything else
-Makefile.dep: ../include/deal.II/lac/lapack_templates.h \
- $(cc-files)
- @echo "===================================== Remaking $@"
- @for i in $(all-dirs) ; do \
- echo $$i/Makefile.dep: $$i/*.cc \
- $(h-files) \
- Makefile \
- $D/common/Make.global_options ; \
- done >> $@
- @echo "lac/Makefile.dep: $D/include/deal.II/lac/lapack_templates.h.in \
- $D/include/deal.II/lac/lapack_templates.h.in" \
- >> $@
-include Makefile.dep
-
-
-# Rule to generate the dependency files, one for each source
-# directory. These file are automagically remade whenever needed,
-# i.e. whenever one of the cc-/h-files changed. Make detects whether
-# to remake this file upon inclusion below.
-#
-# If the command fails, then remove Makefile.dep again and fail
-%/Makefile.dep:
- @echo "===================================== Remaking $@"
- @$D/common/scripts/make_dependencies -n $(INCLUDE) "-B\$$(LIBDIR)" \
- $(filter $D/source/$(dir $@)%, $(cc-files)) \
- | $(PERL) -pe 's!LIBDIR\)/(debug|optimized)/(.*):!LIBDIR)/$$1/$(@:%/Makefile.dep=%)_$$2:!g;' \
- > $@
- @if test ! -s $@ ; then \
- echo "*** make_dependencies failed to produce a valid file $@" ; \
- rm $@ ; \
- false ; \
- fi
-
-
-# include all the dependencies
-include $(addsuffix /Makefile.dep, $(all-dirs))
-
-endif
-
-
-
-################### some clean-up rules
-
-clean:
- -rm -f Makefile.dep *~ */*~ */*/*~ */Makefile.dep source/*/*.inst \
- $D/lib/{debug,optimized}/*.o
-
-
-################### coverage
-# A target that creates a visual representation of which files and
-# lines are covered by the testsuite, the example programs, and
-# possible other executables. To use this rule, configure deal.II
-# as usual, then add "-fprofile-arcs -ftest-coverage" to the following
-# variables in common/Make.global_options:
-# - SHLIBFLAGS
-# - LDFLAGS
-# - CXXFLAGS.g
-# Then compile the library and run all the executables for which you
-# want it reported that. Note, however, that you can't run them in
-# parallel or they will step on each other's toes when writing output.
-# In other words, the testsuite has to be run with -j1, however long
-# that may take.
-#
-# When all of these programs have been run, the do
-# cd source
-# make coverage
-# This may take a long time: both running lcov and, in particular,
-# genhtml can take hours. In the latter case, there isn't even an
-# indication that anything is happening, but it is -- just be
-# patient, let it run overnight.
-coverage:
- for dir in $(all-dirs) ; do \
- cd $$dir ; \
- for file in *.cc ; do \
- basename=`echo $$file | perl -pi -e 's/\\.cc$$//;'` ; \
- for ext in o gcda gcno ; do \
- rm -f $${basename}.$$ext ; \
- if test -f $D/lib/debug/$${dir}_$${basename}.$$ext ; then \
- ln $D/lib/debug/$${dir}_$${basename}.$$ext $${basename}.$$ext ; \
- fi ; \
- done ; \
- done ; \
- cd .. ; \
- done
- lcov --base-directory . --directory . -c -o d2.info
- lcov --remove d2.info "/usr*" -o d2.info
- rm -rf ../coverage
- genhtml -o ../coverage -t "deal.II test coverage" --num-spaces 8 d2.info
-
-
-###################
-
-.PHONY: default all debug optimized TAGS
-.PHONY: clean
--- /dev/null
+set(SRC_BASE
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/auto_derivative_function.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/boost_serialization.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/boost_threads.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/conditional_ostream.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/config.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/convergence_table.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/data_out_base.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/event.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/exceptions.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/flow_function.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/function.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/function_derivative.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/function_lib.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/function_lib_cutoff.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/function_parser.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/function_time.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/geometry_info.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/index_set.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/job_identifier.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/logstream.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/memory_consumption.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/mpi.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/multithread_info.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/parallel.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/parameter_handler.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/parsed_function.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/partitioner.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/path_search.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomial.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomials_abf.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomials_adini.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomials_bdm.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomials_nedelec.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomial_space.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomials_p.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/polynomials_raviart_thomas.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/quadrature.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/quadrature_lib.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/quadrature_selector.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/subscriptor.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/symmetric_tensor.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/table_handler.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/tensor_function.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/tensor_product_polynomials.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/thread_management.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/timer.cc
+ ${CMAKE_CURRENT_SOURCE_DIR}/base/utilities.cc
+ )