#include <deal.II/base/point.h>
#include <iostream>
+#include <map>
#include <string>
#include <vector>
std::to_string(arg1) + " lines and " + std::to_string(arg2) +
" facets (surface triangles or quadrilaterals).");
+ /**
+ * Return a map containing field data. The format of the returned map is as
+ * follows:
+ * - std::string stores the name of the field data (identifier) as specified
+ * in the external mesh
+ * - std::vector<double> stores value for the given identifier in each cell.
+ * To access the value use field_data[name_field][cell_id].
+ */
+ const std::map<std::string, std::vector<double>> &
+ get_field_data() const;
+
protected:
/**
* Store address of the triangulation to be fed with the data read in.
* Input format used by read() if no format is given.
*/
Format default_format;
+
+ /**
+ * Data member that stores cell data. The format is as follows:
+ * - std::string stores the name of the field data (identifier) as specified
+ * in the external mesh
+ * - std::vector<double> stores value for the given identifier in each
+ * cell_id. To access the value use field_data[name_field][cell_id].
+ */
+ std::map<std::string, std::vector<double>> field_data;
};
/* -------------- declaration of explicit specializations ------------- */
{
std::string line;
- // verify that the first, third and fourth lines match
- // expectations. the second line of the file may essentially be
- // anything the author of the file chose to identify what's in
- // there, so we just ensure that we can read it
+ // verify that the third and fourth lines match
+ // expectations. the first line is not checked to allow use of
+ // different vtk versions and the second line of the file may
+ // essentially be anything the author of the file chose to
+ // identify what's in there, so we just ensure that we can read it.
{
std::string text[4];
text[0] = "# vtk DataFile Version 3.0";
for (unsigned int i = 0; i < 4; ++i)
{
getline(in, line);
- if (i != 1)
+ if (i == 2 || i == 3)
AssertThrow(
line.compare(text[i]) == 0,
ExcMessage(
for (unsigned int i = 0; i < n_ints; ++i)
in >> tmp_int;
+
+ // Processing the CELL_DATA and FIELD_DATA sections
+
// Ignore everything up to CELL_DATA
while (in >> keyword)
- if (keyword == "CELL_DATA")
- {
- unsigned int n_ids;
- in >> n_ids;
-
- AssertThrow(n_ids == n_geometric_objects,
- ExcMessage("The VTK reader found a CELL_DATA statement "
- "that lists a total of " +
- Utilities::int_to_string(n_ids) +
- " cell data objects, but this needs to "
- "equal the number of cells (which is " +
- Utilities::int_to_string(cells.size()) +
- ") plus the number of quads (" +
- Utilities::int_to_string(
- subcelldata.boundary_quads.size()) +
- " in 3d or the number of lines (" +
- Utilities::int_to_string(
- subcelldata.boundary_lines.size()) +
- ") in 2d."));
-
- const std::vector<std::string> data_sets{"MaterialID",
- "ManifoldID"};
-
- for (unsigned int i = 0; i < data_sets.size(); ++i)
- {
- // Ignore everything until we get to a SCALARS data set
- while (in >> keyword)
+ {
+ if (keyword == "CELL_DATA")
+ {
+ unsigned int n_ids;
+ in >> n_ids;
+
+ AssertThrow(
+ n_ids == n_geometric_objects,
+ ExcMessage(
+ "The VTK reader found a CELL_DATA statement "
+ "that lists a total of " +
+ Utilities::int_to_string(n_ids) +
+ " cell data objects, but this needs to "
+ "equal the number of cells (which is " +
+ Utilities::int_to_string(cells.size()) +
+ ") plus the number of quads (" +
+ Utilities::int_to_string(subcelldata.boundary_quads.size()) +
+ " in 3d or the number of lines (" +
+ Utilities::int_to_string(subcelldata.boundary_lines.size()) +
+ ") in 2d."));
+
+ const std::vector<std::string> data_sets{"MaterialID",
+ "ManifoldID"};
+
+ in >> keyword;
+ for (unsigned int i = 0; i < data_sets.size(); ++i)
+ {
+ // Ignore everything until we get to a SCALARS data set
+
+ std::cout << "keyword: " << keyword << std::endl;
if (keyword == "SCALARS")
{
// Now see if we know about this type of data set,
}
}
}
- }
- }
+ // check if a second SCALAR exists. If so, read the new
+ // keyword SCALARS, otherwise, return to the bookmarked
+ // position.
+ std::streampos oldpos = in.tellg();
+ in >> keyword;
+ if (keyword == "SCALARS")
+ continue;
+ else
+ in.seekg(oldpos);
+ }
+ }
+
+
+ // Addition of FIELD DATA:
+
+
+ else if (keyword == "FIELD")
+ {
+ unsigned int n_fields;
+ in >> keyword;
+ AssertThrow(
+ keyword == "FieldData",
+ ExcMessage(
+ "While reading VTK file, missing keyword FieldData"));
+
+ in >> n_fields;
+
+ for (unsigned int i = 0; i < n_fields; ++i)
+ {
+ std::string section_name;
+ std::string data_type;
+ unsigned int temp, n_ids;
+ double data;
+ in >> section_name;
+ in >> temp;
+ in >> n_ids;
+ AssertThrow(
+ n_ids == n_geometric_objects,
+ ExcMessage(
+ "The VTK reader found a FIELD statement "
+ "that lists a total of " +
+ Utilities::int_to_string(n_ids) +
+ " cell data objects, but this needs to equal the number of cells (which is " +
+ Utilities::int_to_string(cells.size()) +
+ ") plus the number of quads (" +
+ Utilities::int_to_string(
+ subcelldata.boundary_quads.size()) +
+ " in 3d or the number of lines (" +
+ Utilities::int_to_string(
+ subcelldata.boundary_lines.size()) +
+ ") in 2d."));
+ in >> data_type;
+ std::vector<double> temp_data;
+ temp_data.resize(n_ids);
+ for (unsigned int j = 0; j < n_ids; ++j)
+ {
+ in >> data;
+ if (j < cells.size())
+ temp_data[j] = data;
+ }
+ this->field_data[section_name] = std::move(temp_data);
+ }
+ }
+ else
+ {
+ // just ignore a line that doesn't start with any of the
+ // recognized tags
+ }
+ } // end of while loop
+ Assert(subcelldata.check_consistency(dim), ExcInternalError());
apply_grid_fixup_functions(vertices, cells, subcelldata);
tria->create_triangulation(vertices, cells, subcelldata);
"While reading VTK file, failed to find CELLS section"));
}
-
+template <int dim, int spacedim>
+const std::map<std::string, std::vector<double>> &
+GridIn<dim, spacedim>::get_field_data() const
+{
+ return this->field_data;
+}
template <int dim, int spacedim>
void
--- /dev/null
+// ---------------------------------------------------------------------
+//
+// Copyright (C) 2002 - 2018 by the deal.II authors
+//
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE.md at
+// the top level directory of deal.II.
+//
+// ---------------------------------------------------------------------
+
+
+// read a 2d file in the VTK format with field data
+
+#include <deal.II/dofs/dof_handler.h>
+
+#include <deal.II/grid/grid_generator.h>
+#include <deal.II/grid/grid_in.h>
+#include <deal.II/grid/grid_out.h>
+#include <deal.II/grid/manifold_lib.h>
+#include <deal.II/grid/tria.h>
+#include <deal.II/grid/tria_accessor.h>
+#include <deal.II/grid/tria_iterator.h>
+
+#include <boost/lexical_cast.hpp>
+#include <boost/tokenizer.hpp>
+
+#include <string>
+
+#include "../tests.h"
+
+template <int dim>
+void
+check_file(const std::string name, typename GridIn<dim>::Format format)
+{
+ Triangulation<dim> triangulation;
+ GridIn<dim> gridin;
+ GridOut gridout;
+
+ gridin.attach_triangulation(triangulation);
+ gridin.read(name, format);
+ deallog << '\t' << triangulation.n_vertices() << '\t'
+ << triangulation.n_cells() << std::endl;
+ std::map<std::string, std::vector<double>> field_data;
+
+ field_data = gridin.get_field_data();
+ if (field_data.size() > 0)
+ {
+ std::map<std::string, std::vector<double>>::const_iterator iter =
+ field_data.find("Density");
+ if (iter != field_data.end())
+ {
+ std::vector<double> cell_density = iter->second;
+ for (typename Triangulation<dim>::active_cell_iterator cell =
+ triangulation.begin_active();
+ cell != triangulation.end();
+ ++cell)
+ {
+ // store cell ID as a string
+ std::string text = boost::lexical_cast<std::string>(cell->id());
+ // Convert the string containing cell ID to an integer
+ boost::char_separator<char> sep{"_"};
+ boost::tokenizer<boost::char_separator<char>> tokens(text, sep);
+ unsigned int cell_id =
+ boost::lexical_cast<int>(*(tokens.begin()));
+ deallog << '\t' << cell_density[cell_id] << std::endl;
+ }
+ }
+ }
+
+ gridout.write_gnuplot(triangulation, deallog.get_file_stream());
+}
+
+void
+filename_resolution()
+{
+ check_file<2>(std::string(SOURCE_DIR "/grid_in_vtk_2d_field_data/mesh"),
+ GridIn<2>::vtk);
+}
+
+
+int
+main()
+{
+ initlog();
+ deallog << std::setprecision(2);
+
+ filename_resolution();
+}
--- /dev/null
+
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projects / dealii.git / commitdiff