//----------------------------------------------------------------------//
// For a given patch, compute the node interpolating the corner nodes linearly
// at the point (xstep, ystep, zstep)*1./n_subdivisions. If the points are
- // saved in the patch.data member, return the saved point instead
+ // saved in the patch.data member, return the saved point instead.
template <int dim, int spacedim>
inline Point<spacedim>
- compute_node(const DataOutBase::Patch<dim, spacedim> &patch,
- const unsigned int xstep,
- const unsigned int ystep,
- const unsigned int zstep,
- const unsigned int n_subdivisions)
+ compute_hypercube_node(const DataOutBase::Patch<dim, spacedim> &patch,
+ const unsigned int xstep,
+ const unsigned int ystep,
+ const unsigned int zstep,
+ const unsigned int n_subdivisions)
{
Point<spacedim> node;
if (patch.points_are_available)
return node;
}
+ // For a given patch, compute the nodes for arbitrary (non-hypercube) cells.
+ // If the points are saved in the patch.data member, return the saved point
+ // instead.
+ template <int dim, int spacedim>
+ inline Point<spacedim>
+ compute_arbitrary_node(const DataOutBase::Patch<dim, spacedim> &patch,
+ const unsigned int point_no)
+ {
+ Point<spacedim> node;
+
+ if (patch.points_are_available)
+ {
+ for (unsigned int d = 0; d < spacedim; ++d)
+ node[d] = patch.data(patch.data.size(0) - spacedim + d, point_no);
+ return node;
+ }
+ else
+ {
+ AssertDimension(patch.n_subdivisions, 1);
+ Assert(
+ patch.reference_cell != ReferenceCells::Pyramid,
+ ExcMessage(
+ "Pyramids need different ordering of the vertices, which is not implemented yet here."));
+
+ node = patch.vertices[point_no];
+ }
+
+ return node;
+ }
+
/**
* Given (i,j,k) coordinates within the Lagrange quadrilateral, return an
* offset into the local connectivity array.
for (const auto &patch : patches)
{
- // special treatment of simplices since they are not subdivided, such
- // that no new nodes have to be created, but the precomputed ones can be
- // used
+ // special treatment of non-hypercube cells
if (patch.reference_cell != ReferenceCells::get_hypercube<dim>())
{
- Point<spacedim> node;
-
for (unsigned int point_no = 0; point_no < patch.data.n_cols();
++point_no)
- {
- for (unsigned int d = 0; d < spacedim; ++d)
- node[d] =
- patch.data(patch.data.size(0) - spacedim + d, point_no);
-
- out.write_point(count++, node);
- }
+ out.write_point(count++, compute_arbitrary_node(patch, point_no));
}
else
{
for (unsigned int i2 = 0; i2 < n2; ++i2)
for (unsigned int i1 = 0; i1 < n1; ++i1)
out.write_point(
- count++, compute_node(patch, i1, i2, i3, n_subdivisions));
+ count++,
+ compute_hypercube_node(patch, i1, i2, i3, n_subdivisions));
}
}
out.flush_points();
for (unsigned int i1 = 0; i1 < n1; ++i1)
{
// compute coordinates for this patch point
- out << compute_node(patch, i1, i2, 0, n_subdivisions)
+ out << compute_hypercube_node(
+ patch, i1, i2, 0, n_subdivisions)
<< ' ';
for (unsigned int data_set = 0; data_set < n_data_sets;
{
// compute coordinates for this patch point
this_point =
- compute_node(patch, i1, i2, i3, n_subdivisions);
+ compute_hypercube_node(patch, i1, i2, i3, n_subdivisions);
// line into positive x-direction if possible
if (i1 < n_subdivisions)
{
out << '\n';
// write point there and its data
- out << compute_node(
+ out << compute_hypercube_node(
patch, i1 + 1, i2, i3, n_subdivisions);
for (unsigned int data_set = 0; data_set < n_data_sets;
out << '\n';
// write point there and its data
- out << compute_node(
+ out << compute_hypercube_node(
patch, i1, i2 + 1, i3, n_subdivisions);
for (unsigned int data_set = 0; data_set < n_data_sets;
out << '\n';
// write point there and its data
- out << compute_node(
+ out << compute_hypercube_node(
patch, i1, i2, i3 + 1, n_subdivisions);
for (unsigned int data_set = 0; data_set < n_data_sets;
{
// compute coordinates for this patch point, storing in ver
ver[i1 * d1 + i2 * d2] =
- compute_node(patch, i1, i2, 0, n_subdivisions);
+ compute_hypercube_node(patch, i1, i2, 0, n_subdivisions);
}
for (unsigned int i1 = 0; i1 < n_subdivisions; ++i1)
{
Point<spacedim> points[4];
- points[0] = compute_node(patch, i1, i2, 0, n_subdivisions);
- points[1] = compute_node(patch, i1 + 1, i2, 0, n_subdivisions);
- points[2] = compute_node(patch, i1, i2 + 1, 0, n_subdivisions);
- points[3] =
- compute_node(patch, i1 + 1, i2 + 1, 0, n_subdivisions);
+ points[0] =
+ compute_hypercube_node(patch, i1, i2, 0, n_subdivisions);
+ points[1] =
+ compute_hypercube_node(patch, i1 + 1, i2, 0, n_subdivisions);
+ points[2] =
+ compute_hypercube_node(patch, i1, i2 + 1, 0, n_subdivisions);
+ points[3] = compute_hypercube_node(
+ patch, i1 + 1, i2 + 1, 0, n_subdivisions);
switch (spacedim)
{
Point<2> projection_decomposition;
std::array<Point<2>, 4> projection_decompositions;
- projected_point = compute_node(first_patch, 0, 0, 0, n_subdivisions);
+ projected_point =
+ compute_hypercube_node(first_patch, 0, 0, 0, n_subdivisions);
if (first_patch.data.n_rows() != 0)
{
for (unsigned int i1 = 0; i1 < n_subdivisions; ++i1)
{
projected_points[0] =
- compute_node(patch, i1, i2, 0, n_subdivisions);
+ compute_hypercube_node(patch, i1, i2, 0, n_subdivisions);
projected_points[1] =
- compute_node(patch, i1 + 1, i2, 0, n_subdivisions);
+ compute_hypercube_node(patch, i1 + 1, i2, 0, n_subdivisions);
projected_points[2] =
- compute_node(patch, i1, i2 + 1, 0, n_subdivisions);
- projected_points[3] =
- compute_node(patch, i1 + 1, i2 + 1, 0, n_subdivisions);
+ compute_hypercube_node(patch, i1, i2 + 1, 0, n_subdivisions);
+ projected_points[3] = compute_hypercube_node(
+ patch, i1 + 1, i2 + 1, 0, n_subdivisions);
x_min = std::min(x_min, projected_points[0][0]);
x_min = std::min(x_min, projected_points[1][0]);
Point<3> point;
- projected_point = compute_node(first_patch, 0, 0, 0, n_subdivisions);
+ projected_point =
+ compute_hypercube_node(first_patch, 0, 0, 0, n_subdivisions);
if (first_patch.data.n_rows() != 0)
{
for (unsigned int i1 = 0; i1 < n_subdivisions; ++i1)
{
const std::array<Point<spacedim>, 4> projected_vertices{
- {compute_node(patch, i1, i2, 0, n_subdivisions),
- compute_node(patch, i1 + 1, i2, 0, n_subdivisions),
- compute_node(patch, i1, i2 + 1, 0, n_subdivisions),
- compute_node(patch, i1 + 1, i2 + 1, 0, n_subdivisions)}};
+ {compute_hypercube_node(patch, i1, i2, 0, n_subdivisions),
+ compute_hypercube_node(patch, i1 + 1, i2, 0, n_subdivisions),
+ compute_hypercube_node(patch, i1, i2 + 1, 0, n_subdivisions),
+ compute_hypercube_node(
+ patch, i1 + 1, i2 + 1, 0, n_subdivisions)}};
Assert((flags.height_vector < patch.data.n_rows()) ||
patch.data.n_rows() == 0,
for (unsigned int i1 = 0; i1 < n_subdivisions; ++i1)
{
const std::array<Point<spacedim>, 4> projected_vertices = {
- {compute_node(patch, i1, i2, 0, n_subdivisions),
- compute_node(patch, i1 + 1, i2, 0, n_subdivisions),
- compute_node(patch, i1, i2 + 1, 0, n_subdivisions),
- compute_node(patch, i1 + 1, i2 + 1, 0, n_subdivisions)}};
+ {compute_hypercube_node(patch, i1, i2, 0, n_subdivisions),
+ compute_hypercube_node(patch, i1 + 1, i2, 0, n_subdivisions),
+ compute_hypercube_node(patch, i1, i2 + 1, 0, n_subdivisions),
+ compute_hypercube_node(
+ patch, i1 + 1, i2 + 1, 0, n_subdivisions)}};
Assert((flags.height_vector < patch.data.n_rows()) ||
patch.data.n_rows() == 0,
data_names.emplace_back("level_subdomain");
data_names.emplace_back("proc_writing");
- const unsigned int n_q_points = GeometryInfo<dim>::vertices_per_cell;
+ const auto reference_cells = tria.get_reference_cells();
+
+ AssertDimension(reference_cells.size(), 1);
+
+ const auto &reference_cell = reference_cells[0];
+
+ const unsigned int n_q_points = reference_cell.n_vertices();
for (const auto &cell : tria.cell_iterators())
{
DataOutBase::Patch<dim, spacedim> patch;
patch.data.reinit(n_datasets, n_q_points);
patch.points_are_available = false;
+ patch.reference_cell = reference_cell;
for (unsigned int vertex = 0; vertex < n_q_points; ++vertex)
{
patch.data(3, vertex) = tria.locally_owned_subdomain();
}
- for (auto f : GeometryInfo<dim>::face_indices())
+ for (auto f : reference_cell.face_indices())
patch.neighbors[f] = numbers::invalid_unsigned_int;
patches.push_back(patch);
}
--- /dev/null
+// This file is part of the deal.II library.
+//
+// The deal.II library is free software; you can use it, redistribute
+// it, and/or modify it under the terms of the GNU Lesser General
+// Public License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+// The full text of the license can be found in the file LICENSE.md at
+// the top level directory of deal.II.
+//
+// ---------------------------------------------------------------------
+
+
+
+// check GriOut::write_mesh_per_processor_as_vtu()
+
+#include <deal.II/base/geometry_info.h>
+#include <deal.II/base/tensor.h>
+
+#include <deal.II/distributed/shared_tria.h>
+
+#include <deal.II/dofs/dof_accessor.h>
+#include <deal.II/dofs/dof_handler.h>
+#include <deal.II/dofs/dof_tools.h>
+
+#include <deal.II/fe/fe_q.h>
+
+#include <deal.II/grid/grid_generator.h>
+#include <deal.II/grid/grid_out.h>
+#include <deal.II/grid/tria.h>
+#include <deal.II/grid/tria_accessor.h>
+#include <deal.II/grid/tria_iterator.h>
+
+#include <deal.II/numerics/data_out.h>
+
+#include "../tests.h"
+
+
+template <int dim>
+void
+output(const Triangulation<dim> &tr,
+ const std::string & filename,
+ const bool view_levels,
+ const bool include_artificial)
+{
+ GridOut out;
+ out.write_mesh_per_processor_as_vtu(tr,
+ filename,
+ view_levels,
+ include_artificial);
+
+ // copy the .pvtu and .vtu files
+ // into the logstream
+ int myid = Utilities::MPI::this_mpi_process(MPI_COMM_WORLD);
+ if (myid == 0)
+ {
+ cat_file((std::string(filename) + ".pvtu").c_str());
+ cat_file((std::string(filename) + ".proc0000.vtu").c_str());
+ }
+ else if (myid == 1)
+ cat_file((std::string(filename) + ".proc0001.vtu").c_str());
+ else if (myid == 2)
+ cat_file((std::string(filename) + ".proc0002.vtu").c_str());
+ else
+ AssertThrow(false, ExcNotImplemented());
+}
+
+template <int dim>
+void
+test()
+{
+ unsigned int myid = Utilities::MPI::this_mpi_process(MPI_COMM_WORLD);
+ if (myid == 0)
+ deallog << "hyper_cube" << std::endl;
+
+
+ parallel::shared::Triangulation<dim> triangulation(
+ MPI_COMM_WORLD,
+ ::Triangulation<dim>::none,
+ true,
+ parallel::shared::Triangulation<dim>::Settings::partition_zorder);
+
+ Triangulation<dim> temp;
+ GridGenerator::hyper_cube(temp);
+ GridGenerator::convert_hypercube_to_simplex_mesh(temp, triangulation);
+
+ triangulation.refine_global(2);
+
+ DoFHandler<dim> dofh(triangulation);
+
+ output(triangulation, "file1", false, true);
+ output(triangulation, "file2", true, false);
+}
+
+
+int
+main(int argc, char *argv[])
+{
+ Utilities::MPI::MPI_InitFinalize mpi_initialization(argc, argv, 1);
+
+ MPILogInitAll init;
+
+ deallog.push("2d");
+ test<2>();
+ deallog.pop();
+}
--- /dev/null
+
+DEAL:0:2d::hyper_cube
+<?xml version="1.0"?>
+<!--
+#This file was generated
+-->
+<VTKFile type="PUnstructuredGrid" version="0.1" byte_order="LittleEndian">
+ <PUnstructuredGrid GhostLevel="0">
+ <PPointData Scalars="scalars">
+ <PDataArray type="Float32" Name="subdomain" format="ascii"/>
+ <PDataArray type="Float32" Name="proc_writing" format="ascii"/>
+ </PPointData>
+ <PPoints>
+ <PDataArray type="Float32" NumberOfComponents="3"/>
+ </PPoints>
+ <Piece Source="file1.proc0000.vtu"/>
+ <Piece Source="file1.proc0001.vtu"/>
+ <Piece Source="file1.proc0002.vtu"/>
+ </PUnstructuredGrid>
+</VTKFile>
+
+<?xml version="1.0" ?>
+<!--
+# vtk DataFile Version 3.0
+#This file was generated
+-->
+<VTKFile type="UnstructuredGrid" version="0.1" compressor="vtkZLibDataCompressor" byte_order="LittleEndian">
+<UnstructuredGrid>
+<Piece NumberOfPoints="384" NumberOfCells="128" >
+ <Points>
+ <DataArray type="Float32" NumberOfComponents="3" format="binary">
+AQAAAAASAAAAEgAABgIAAA==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
+ </DataArray>
+ </Points>
+
+ <Cells>
+ <DataArray type="Int32" Name="connectivity" format="binary">
+AQAAAAAGAAAABgAARwIAAA==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
+ </DataArray>
+ <DataArray type="Int32" Name="offsets" format="binary">
+AQAAAAACAAAAAgAA6gAAAA==eNoNwwFEGAEAAMCvlFJKKaWUpimllFJKs5SylFJKKaWUUkoppTSbjRERERERERERETEiIiIiIiIiIiIiou64sCAIIowyxjgTTDLFNDP84ldzzLPAIksss8JvVlljnfU22myr7Xbaba/9DjrsqONOOu2s8/70t3/956JLLrviqmuuu+GmW26746577nvgoUf+99gTTz3z3AsvvfLaG2+9894HH33y2RdfffPdD0NDgiDcSKONNd5Ek0013UyzzDbXfAstttRyK/1utbX+sMEmW2yzwy577HPAIUccc8IpZ5xzwV/+8RPNizXs
+ </DataArray>
+ <DataArray type="UInt8" Name="types" format="binary">
+AQAAAIAAAACAAAAADAAAAA==eNpjZR1YAAChwAKB
+ </DataArray>
+ </Cells>
+ <PointData Scalars="scalars">
+ <DataArray type="Float32" Name="level" format="binary">
+AQAAAAAGAAAABgAAFwAAAA==eNpjYGBwYBjFo3gUj+JRPOIwALbRYAE= </DataArray>
+ <DataArray type="Float32" Name="subdomain" format="binary">
+AQAAAAAGAAAABgAAPwAAAA==eNpjYBgFowAZNNiThhkOkI9JNZ8S9ZS4kxj308J8StxAtfhyQMK4xHGpoZY5DkRgYuyixL+DDVPFnQAUpKrU </DataArray>
+ <DataArray type="Float32" Name="level_subdomain" format="binary">
+AQAAAAAGAAAABgAAFAAAAA==eNpjYBgFo2AUjIJRMBIBAAYAAAE= </DataArray>
+ <DataArray type="Float32" Name="proc_writing" format="binary">
+AQAAAAAGAAAABgAAFAAAAA==eNpjYBgFo2AUjIJRMBIBAAYAAAE= </DataArray>
+ </PointData>
+ </Piece>
+ </UnstructuredGrid>
+</VTKFile>
+
+<?xml version="1.0"?>
+<!--
+#This file was generated
+-->
+<VTKFile type="PUnstructuredGrid" version="0.1" byte_order="LittleEndian">
+ <PUnstructuredGrid GhostLevel="0">
+ <PPointData Scalars="scalars">
+ <PDataArray type="Float32" Name="subdomain" format="ascii"/>
+ <PDataArray type="Float32" Name="proc_writing" format="ascii"/>
+ </PPointData>
+ <PPoints>
+ <PDataArray type="Float32" NumberOfComponents="3"/>
+ </PPoints>
+ <Piece Source="file2.proc0000.vtu"/>
+ <Piece Source="file2.proc0001.vtu"/>
+ <Piece Source="file2.proc0002.vtu"/>
+ </PUnstructuredGrid>
+</VTKFile>
+
+<?xml version="1.0" ?>
+<!--
+# vtk DataFile Version 3.0
+#This file was generated
+-->
+<VTKFile type="UnstructuredGrid" version="0.1" compressor="vtkZLibDataCompressor" byte_order="LittleEndian">
+<UnstructuredGrid>
+<Piece NumberOfPoints="504" NumberOfCells="168" >
+ <Points>
+ <DataArray type="Float32" NumberOfComponents="3" format="binary">
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+ </DataArray>
+ </Points>
+
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+
projects / dealii.git / commitdiff