<p>
Some other resources on the use of <acronym>deal.II</acronym> or its
- development can also be found on
+ development can also be found on
<a href="http://www.dealii.org/presentations/" target="body">a page
where we collect a few presentations</a>.
</p>
<p>
If you write a paper using results obtained with the help of
<acronym>deal.II</acronym>, please cite one or both of the following
- references:
+ references:
</p>
<ol>
<a
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, O. Kayser-Herold,
- <br>
+ <br>
<strong>Data Structures and Requirements for hp Finite Element
Software
</strong>
testsuite as a reference for compiler and hardware
optimizations. The following special issue gives a detailed
comparison with respect to many different metrics of the
- benchmarks in SPEC CPU2006, including <acronym>deal.II</acronym>:
+ benchmarks in SPEC CPU2006, including <acronym>deal.II</acronym>:
<ol>
<li value="2"> <p>
<strong>Special Issue: SPEC CPU2006 analysis (Editor: John Henning)
<h3>Publications in 2009</h3>
<!-- Please enter alphabetically by name -->
- <ol>
+ <ol>
<li> <p>
M. S. Alnæs, K.-A. Mardal
- <br>
+ <br>
<strong>Symbolic computations and code generation for finite
element methods
</strong>
<li> <p>
F. Alouges, A. DeSimoni, L. Heltai
- <br>
+ <br>
<strong>Numerical strategies for stroke optimization of
axisymmetric microswimmers
</strong>
<a
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, O. Kayser-Herold
- <br>
+ <br>
<strong>Data Structures and Requirements for hp Finite Element
Software
</strong>
<li> <p> B. Cockburn, G. Kanschat, and D. Schötzau
<br>
<strong>An equal-order DG method for the incompressible Navier-Stokes
- equations</strong>
+ equations</strong>
<br>
J. Sci. Comput., 2009. to appear.
<a href="http://dx.doi.org/10.1007/s10915-008-9261-1">DOI: 10.1007/s10915-008-9261-1</a>
</p>
-
+
<li> <p> B. Brendel, T. Nielsen
<br>
<strong>Selection of optimal wavelengths for spectral reconstruction
- in diffuse optical tomography</strong>
+ in diffuse optical tomography</strong>
<br>
J. Biomed. Optics, vol. 14, 034041/1-034041/10, 2009.
</p>
-
+
<li> <p>C. Clason, P. Hepperger
<br>
- <strong>A forward approach to numerical data assimilation</strong>
+ <strong>A forward approach to numerical data assimilation</strong>
<br>
SIAM J. Sc. Comput., vol. 31, pp. 3090-3115, 2009
</p>
-
+
<li> <p>
F. Freddi, G. Royer-Carfagni
<br>
H. Ramon, D. Roose
<br>
<strong>Multi-scale simulation of plant tissue deformation
- using a model for individual cell mechanics
+ using a model for individual cell mechanics
</strong>
<br>
Phys. Biol., vol. 6, pp. 016009/1-14, 2009
</p>
<li> <p>
- T. Jetzfellner, D. Razansky, A. Rosenthal, R. Schulz,
+ T. Jetzfellner, D. Razansky, A. Rosenthal, R. Schulz,
K.-H. Englmeier, V. Ntziachristos
<br>
<strong>Performance of iterative optoacoustic tomography with
- experimental data</strong>
+ experimental data</strong>
<br>
Appl. Phys. Lett., vol. 95, pp. 013703/1-3, 2009
</p>
S. T. Miller, F. Costanzo
<br>
<strong>A numerical verification for an unconditionally
- stable FEM for elastodynamics</strong>
+ stable FEM for elastodynamics</strong>
<br>
Comp. Mech., vol. 43, pp. 223-237, 2009
+ </p>
+
+ <li> <p>
+ S. Kim
+ <br>
+ <strong>Analysis of a PML method applied to computation of
+ resonances in open systems and acoustic scattering problems</strong>
<br>
- <a href="http://www.isc.tamu.edu/publications-reports/tr/0701.pdf">(Preprint)</a>
+ Ph.D. thesis, Texas A&M University, 2009
+ </p>
+
+ <li> <p>
+ S. Kim, J. E. Pasciak
+ <br>
+ <strong>The computation of resonances in open systems using a
+ perfectly matched layer</strong>
+ <br>
+ Math. Comp., vol. 78, pp. 1375-1398, 2009
+ </p>
+
+ <li> <p>
+ S. Kim, J. E. Pasciak
+ <br>
+ <strong>Analysis of a Cartesian PML approximation to acoustic
+ scattering problems in R<sup>2</sup></strong>
+ <br>
+ Math. Comp., submitted, 2009
</p>
<li> <p>
<br>
<strong>Fractured reservoir simulation using finite element method
with logarithmic shape functions (in Persian)
- </strong>
+ </strong>
<br>
M. Sc. thesis, Sharif University of Technology, Iran, 2009.
</p>
<br>
<strong>Diffusion restrictions surrounding mitochondria: a
mathematical model of heart muscle fibers
- </strong>
+ </strong>
<br>
Biophys. J., vol. 97, pp. 443-452, 2009.
</p>
<br>
<strong>A robust a-posteriori error estimator for discontinuous
Galerkin methods for convection-diffusion equations
- </strong>
+ </strong>
<br>
Appl. Numer. Math., vol. 59, pp. 2236-2255, 2009
</p>
B. Turcksin, J. C. Ragusa, W. Bangerth
<br>
<strong>Goal-oriented h-adaptivity for the multigroup SP<sub>N</sub>
- equations
- </strong>
+ equations
+ </strong>
<br>
IAMCS preprint 2009-068, submitted to Nucl. Sc. Engrg., 2009
</p>
<li> <p>
M. Vdroljak
- <br>
+ <br>
<strong>On Hashin-Shtrikman bounds for mixtures of two isotropic materials
</strong>
<br>
- Nonlinear Analysis: Real world applications, in press, 2009
+ Nonlinear Analysis: Real world applications, in press, 2009
</p>
-
+
<li> <p>
Y. Wang, W. Bangerth, J. Ragusa
- <br>
+ <br>
<strong>Three-dimensional h-adaptivity for the multigroup neutron
diffusion equations
</strong>
<br>
- Progress in Nuclear Energy, vol. 51, pp. 543-555, 2009
+ Progress in Nuclear Energy, vol. 51, pp. 543-555, 2009
</p>
-
+
<li> <p>
J. Willems
- <br>
+ <br>
<strong>Numerical upscaling for multiscale flow problems
</strong>
<br>
- Ph.D. thesis, University of Kaiserslautern, Germany, 2009
+ Ph.D. thesis, University of Kaiserslautern, Germany, 2009
</p>
-
+
<li> <p>
<a href="http://www.ippt.gov.pl/~tyoung"
target="_top">T. D. Young</a>, E. Romero, and J. E. Roman
- <Br>
+ <Br>
<strong>Finite element solution of the stationary schrodinger
equation using standard computational tools
</strong>
<li> <p>
<a href="http://www.ippt.gov.pl/~tyoung"
target="_top">T. D. Young</a>
- <br>
+ <br>
<strong>Exemplifying quantum systems in a finite element
basis
</strong>
<li> <p>
R. Ziegler, B. Brendel, A. Schipper, R. Harbers, M. van Beek,
- H. Rinneberg, T. Nielsen
- <br>
+ H. Rinneberg, T. Nielsen
+ <br>
<strong>Investigation of detection limits for diffuse optical
tomography systems: I. Theory and experiment
</strong>
<li> <p>
R. Ziegler, B. Brendel,
- H. Rinneberg, T. Nielsen
- <br>
+ H. Rinneberg, T. Nielsen
+ <br>
<strong>Investigation of detection limits for diffuse optical
tomography systems: II. Analysis of slab and cup geometry for
- breast imaging
+ breast imaging
</strong>
<br>
Phys. Med. Biol., vol. 54, pp. 413-431, 2009
<h3>Publications in 2008</h3>
<!-- Please enter alphabetically by name -->
- <ol>
+ <ol>
<li> <p>
<a
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>
- <br>
- <strong>A framework for the adaptive finite element solution of
+ <br>
+ <strong>A framework for the adaptive finite element solution of
large-scale inverse problems
</strong>
<br>
<a
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, A. Joshi
- <br>
+ <br>
<strong>Adaptive finite element methods for the solution of
inverse problems in optical tomography
</strong>
<li> <p>
E. Bängtsson, B. Lund
- <br>
+ <br>
<strong>A comparison between two solution techniques to solve
the equations of glacially induced deformation of an elastic
Earth
<a
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>
- <br>
+ <br>
<strong>Post-image acquisition excitation light mitigation in NIR
fluorescent tomography
</strong>
<li> <p>
B. Brendel, R. Ziegler, T. Nielsen
- <br>
- <strong>Algebraic reconstruction techniques for spectral
+ <br>
+ <strong>Algebraic reconstruction techniques for spectral
reconstruction in diffuse optical tomography
</strong>
<br>
href="http://www-dimat.unipv.it/heltai/"
target="_top">L. Heltai</a>,
C. S. Peskin
- <br>
+ <br>
<strong>On the hyper-elastic formulation of
the immersed boundary method
</strong>
Computer Methods in Applied Mechanics and Engineering,
vol. 197, pp. 2210-2231, 2008
</p>
-
+
<li> <p>
B. Carnes, G. F. Carey
- <br>
+ <br>
<strong>Local boundary value problems for the error in FE
approximation of non-linear diffusion systems
</strong>
<li> <p>
N. Djilali, P. C. Sui
- <br>
+ <br>
<strong>Transport phenomena in fuel cells: from microscale to
macroscale
</strong>
<li> <p>
R. Fosdick, F. Freddi, G. Royer-Carfagni
- <br>
+ <br>
<strong>Bifurcation instability in
linear elasticity with the constraint of local injectivity
</strong>
</p>
<li> <p>
- P. Ghysels, G. Samaey, B. Tijskens,
+ P. Ghysels, G. Samaey, B. Tijskens,
H. Ramon, D. Roose
<br>
<strong>Multi-scale simulation of plant tissue deformation
<li> <p>
C. Giavarini, M. L. Santarelli, R. Natalini, F. Freddi
- <br>
+ <br>
<strong>A non linear model of
sulphation of porous stones: numerical simulations and preliminary
laboratory assessments
<a href="http://www.math.unibas.ch/~grote/" target="_top">M. Grote</a>, <a
href="http://www.math.unibas.ch/~schneeba/" target="_top">A.
Schneebeli</a>, <a href="http://www.math.ubc.ca/~schoetzau/" target="_top">D. Schötzau</a>
- <br>
+ <br>
<strong>Interior penalty discontinuous Galerkin method for
Maxwell's equations: optimal L<sup>2</sup>-norm estimates
</strong>
</strong>
<br>
SIAM J. Sci. Comput., vol. 31, no. 1, pp. 708-731, 2008
- </p>
+ </p>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
<li> <p><a
href="http://www-dimat.unipv.it/heltai/"
target="_top">L. Heltai</a>
- <br>
+ <br>
<strong>On the stability of the finite element immersed
boundary method,</strong>
<br>
A. Joshi, <a
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, E. Sevick
- <br>
+ <br>
<strong>Non-Contact Fluorescence Optical Tomography with
Adaptive Finite Element Methods
</strong>
target="_top">G. Kanschat, <a
href="http://www.math.ubc.ca/~schoetzau/"
target="_top">D. Schötzau</a>
- <br>
+ <br>
<strong>Energy norm a-posteriori error estimation for divergence-free
discontinuous Galerkin approximations of the Navier-Stokes
equations
<li> <p>
D. K. Khalmanova, F. Costanzo
- <br>
+ <br>
<strong>A space-time discontinuous Galerkin finite element method for
fully coupled linear thermo-elasto-dynamic problems with strain and
heat flux discontinuities
<li> <p>
L. Khasina
- <br>
+ <br>
<strong>Mathematische Behandlung von Mischungen
elastoplastischer Substanzen
</strong>
</strong>
<br>
Proceedings of the 1st European Conference on Microfluidics, accepted
- for publication. Microfluidics 2008, Bologna, Italy, December
+ for publication. Microfluidics 2008, Bologna, Italy, December
10–12, 2008.
</p>
</strong>
<br>
Int. J. Numer. Meth. Fluids, vol. 56, no. 11, pp. 2111-2138, 2008
- </p>
+ </p>
<li> <p>
M. Neytcheva and E. Bängtsson
<li> <p>
M. Secanell, K. Karan, A. Suleman, N. Djilali
- <br>
+ <br>
<strong>Optimal design of ultralow-platinum PEMFC anode electrodes
</strong>
<br>
<li> <p>
M. Secanell, R. Songprakorp, A. Suleman, N. Djilali
- <br>
+ <br>
<strong>Multi-objective optimization of a polymer electrolyte
fuel cell membrane electrode assembly
</strong>
<li> <p>
J. A. White, R. I. Borja
- <br>
+ <br>
<strong>Stabilized low-order finite elements for coupled
solid-deformation/fluid-diffusion and their application to
fault zone transients
<br>
Comput. Meth. Appl. Mech. Engrg., vol. 197, pp. 4353-4366, 2008
</p>
-
+
<li> <p>
T. Wick
- <br>
+ <br>
<strong>Untersuchung von Kopplungsmechanismen von
- Fluid-Struktur-Interaktion
+ Fluid-Struktur-Interaktion
</strong>
<br>
Master's thesis, Universität Siegen, Germany, 2008
<h3>Publications in 2007</h3>
<!-- Please enter alphabetically by name -->
<ol>
-
+
<li> <p>
P. F. Antonietti,
<a href="http://www-dimat.unipv.it/heltai" >L. Heltai</a>
discontinuous Galerkin methods for Darcy flow
</strong>
<br>
- Computer Methods in Applied Mechanics and Engineering,
+ Computer Methods in Applied Mechanics and Engineering,
vol. 196, pp. 4505-4520, 2007
</li>
<li> <p>
<a
href="http://www.math.tamu.edu/~bangerth"
- target="_top">W. Bangerth</a>,
+ target="_top">W. Bangerth</a>,
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
target="_top">R. Hartmann</a>,
<a href="http://www.math.tamu.edu/~kanschat"
target="_top">G. Kanschat</a>
- <br>
+ <br>
<strong>deal.II — a general-purpose object-oriented finite
element library
</strong>
<a
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, A. Joshi, E. Sevick
- <br>
- <strong>Inverse biomedical imaging using separately adapted meshes
+ <br>
+ <strong>Inverse biomedical imaging using separately adapted meshes
for parameters and forward model variables
</strong>
<br>
<li> <p>
E. Bängtsson, M. Neytcheva
- <br>
+ <br>
<strong>Finite Element Block-Factorized Preconditioners
</strong>
<br>
<li> <p>
D. Boffi, L. Gastaldi, <a
href="http://www-dimat.unipv.it/heltai/" target="_top">L. Heltai</a>
- <br>
+ <br>
<strong>On the CFL condition for the finite element immersed
boundary method</strong>
<br>
Computers & Structures, vol. 85, pp. 775-783, 2007
- (<a href="http://dx.doi.org/10.1016/j.compstruc.2007.01.009" >DOI</a>)
+ (<a href="http://dx.doi.org/10.1016/j.compstruc.2007.01.009" >DOI</a>)
</p>
<li> <p>
D. Boffi, L. Gastaldi, <a
href="http://www-dimat.unipv.it/heltai/"
target="_top">L. Heltai</a>
- <br>
+ <br>
<strong>Numerical stability of the finite element immersed boundary method</strong>
<br>
Mathematical Models and Methods in Applied Sciences, vol. 17,
<li> <p>
M. Calhoun-Lopez, M. D. Gunzburger
- <br>
+ <br>
<strong>The efficient implementation of a finite element,
multi-resolution viscosity method for hyperbolic conservation
laws
<li> <p>
B. Carnes, G. F. Carey
- <br>
+ <br>
<strong>Estimating spatial and parameter error in
parameterized nonlinear reaction-diffusion equations
</strong>
<li> <p>
C. C. Douglas, M. J. Cole, P. Dostert, Y. Efendiev, R. E. Ewing,
G. Haase, J. Hatcher, M. Iskandarani, C. R. Johnson, R. A. Lodder
- <br>
+ <br>
<strong>Dynamically identifying and tracking contaminants in water
bodies
</strong>
<li> <p>
F. Freddi, M. Frémond
- <br>
+ <br>
<strong>Collision and Fractures: a predictive theory
</strong>
<br>
<li> <p>
P.K. Galenko, S. Reutzel, D. M. Herlach, D. Danilov, B. Nestler
- <br>
+ <br>
<strong>Modelling of dendritic solidification in undercooled
dilute Ni-Zr melts
</strong>
<li> <p>
T. Ha, C. Shin
- <br>
+ <br>
<strong>Magnetotelluric inversion via reverse time migration
algorithm of seimic data
</strong>
</strong>
<br>
SIAM J. Numer. Anal., vol. 45, no. 6, pp. 2671-2696, 2007
- </p>
+ </p>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
</strong>
<br>
Int. J. Computing Science and Mathematics, vol. 1, pp. 207-220, 2007
- </p>
+ </p>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
In R. Rannacher, E. Süli, and R. Verführt, eds.,
Adaptive Numerical Methods for PDEs, Mathematisches
Forschungsinstitut Oberwolfach Report 29/2007, pp. 26-30, 2007
- </p>
+ </p>
<li> P. Hepperger
<br>
<a
href="http://www.hsph.harvard.edu/research/bernd-oliver-kayserherold/index.html"
target="_top">O. Kayser-Herold</a>, H.G. Matthies
- <br>
+ <br>
<strong>A unified least-squares formulation for fluid-structure interaction
problems
</strong>
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, R. Sharma, J. Rasmussen, W. Wang,
E. Sevick
- <br>
- <strong>Molecular tomographic imaging of lymph nodes with
+ <br>
+ <strong>Molecular tomographic imaging of lymph nodes with
NIR fluorescence
</strong>
<br>
<li> <p>
B. Nestler, D. Danilov, A. Bracchi,
Y.-L. Huang, T. Niermann, M. Seibt and S. Schneider
- <br>
+ <br>
<strong>A metallic glass composite: Phase-field simulations
and experimental analysis of microstructure evolution
</strong>
<li> <p>
P. J. Phillips and M. F. Wheeler
- <br>
+ <br>
<strong>A coupling of mixed and continuous Galerkin finite
element methods for poroelasticity II: the discrete-in-time case
</strong>
<li> <p>
H.-J. Reinhardt, D. N. Hào, J. Frohne and F.-T. Suttmeier
- <br>
+ <br>
<strong>Numerical solution of Inverse Heat Conduction
- Problems in two spatial dimensions
+ Problems in two spatial dimensions
</strong>
<br>
J. Inverse and Ill-Posed Problems, vol. 5, pp. 19-36, 2007
<li> <p>
M. Schmidt
- <br>
+ <br>
<strong>Systematic discretization of input/output maps and
other contributions to the control of distributed parameter
systems
<li> <p>
M. Secanell, B. Carnes, A. Suleman, N. Djilali
- <br>
+ <br>
<strong>Numerical optimization of proton exchange membrane fuel cell
cathodes
</strong>
<li> <p>
M. Secanell, K. Karan, A. Suleman, N. Djilali
- <br>
+ <br>
<strong>Multi-variable optimization of PEMFC cathodes using
an agglomerate model
</strong>
<li> <p>
R. Ziegler, T. Nielsen, T. Koehler, D. Grosenick,
O. Steinkellner, A. Hagen, R. Macdonald, H. Rinneberg
- <br>
+ <br>
<strong>Reconstruction of absorption and fluorescence
contrast for scanning time-domain fluorescence mammography
</strong>
<li> <p>
M. Allmaras
- <br>
+ <br>
<strong>Optimal Design of Periodic Microstructures by the
Inverse Homogenization Method
</strong>
<li> <p>
N. Antonic, M. Vrdoljak
- <br>
+ <br>
<strong>Sequential laminates in multiple state optimal design problems
</strong>
<br>
<li> <p>
E. Bängtsson, B. Lund
- <br>
+ <br>
<strong>A comparison between two approaches to solve the equations of
isostasy
</strong>
<li> <p>
E. Bängtsson, B. Lund
- <br>
+ <br>
<strong>A comparison between two approaches to solve the equations of
isostasy
</strong>
<li> <p>
E. Bängtsson, M. Neytcheva
- <br>
+ <br>
<strong>Numerical simulations of glacial rebound using
preconditioned iterative solution methods
</strong>
<li> <p>
E. Bängtsson, M. Neytcheva
- <br>
+ <br>
<strong>An agglomerate multilevel preconditioner for linear
- isostasy saddle point problems
+ isostasy saddle point problems
</strong>
<br>
Proceedings of Large-Scale Scientific Computing: 5th
<li> <p>
B. Carnes, N. Djilali
- <br>
+ <br>
<strong>Analysis of coupled proton and water transport in a
PEM fuel cell using the binary friction membrane model
</strong>
<li> <p>
D. Danilov, B. Nestler
- <br>
+ <br>
<strong>Phase-field simulations of eutectic solidification
using an adaptive finite element method
</strong>
<a href="http://www.math.unibas.ch/~grote/" target="_top">M. Grote</a>, <a
href="http://www.math.unibas.ch/~schneeba/" target="_top">A.
Schneebeli</a>, <a href="http://www.math.ubc.ca/~schoetzau/" target="_top">D. Schötzau</a>
- <br>
- <strong> Discontinuous Galerkin Finite Element Method for the Wave Equation
+ <br>
+ <strong> Discontinuous Galerkin Finite Element Method for the Wave Equation
</strong>
<br>
SIAM J. Numer. Anal, vol. 44, pp. 2408-2431, 2006
<li> <p>
T. Ha, C. Shin
- <br>
+ <br>
<strong>Two dimensional magnetotelluric inversion via reverse
time migration algorithm
</strong>
In P. Wesseling, E. Onate, J. Periaux, eds.,
Proceedings of the ECCOMAS CFD 2006, Sept. 5-8, Egmond aan Zee,
The Netherlands, 2006
- </p>
+ </p>
<li> <p>
<br>
In G. Lube and G. Rapin, eds.,
Proceedings of the BAIL 2006 Conference, 2006
- </p>
+ </p>
<li> <p>
</strong>
<br>
Int. J. Numer. Meth. Fluids, vol. 51, pp. 1131-1156, 2006
- </p>
+ </p>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
</strong>
<br>
Int. J. Numer. Anal. Model., vol. 3, pp. 1-20, 2006.
- </p>
+ </p>
<li> <p>
</strong>
<br>
Int. J. Numer. Anal. Model., vol. 3, pp. 141-162, 2006
- </p>
+ </p>
<li> <a href="http://www-dimat.unipv.it/heltai/">L. Heltai</a>
<br>
href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>,
E. Sevick-Muraca
- <br>
+ <br>
<strong>Influence of excitation light rejection on forward model
mismatch in optical tomography
</strong>
<li> <p>
A. Joshi, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, E. Sevick-Muraca
- <br>
+ <br>
<strong>Non-contact fluorescence optical tomography with scanning
patterned illumination
</strong>
A. Joshi, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, K. Hwang, J. C. Rasmussen,
E. Sevick-Muraca
- <br>
+ <br>
<strong>Fully adaptive FEM based fluorescence optical tomography from
time-dependent measurements with area illumination and detection
</strong>
<li> <p>
A. Joshi, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, E. Sevick-Muraca
- <br>
+ <br>
<strong>Non-contact fluorescence optical tomography with scanning
illumination
</strong>
A. Joshi, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, K. Hwang, J. C. Rasmussen,
E. Sevick-Muraca
- <br>
+ <br>
<strong>Plane wave fluorescence tomography with adaptive finite
elements
</strong>
<a
href="http://www.hsph.harvard.edu/research/bernd-oliver-kayserherold/index.html"
target="_top">O. Kayser-Herold</a>
- <br>
+ <br>
<strong>Least-Squares Methods for the Solution of Fluid-Structure
Interaction Problems
</strong>
Available online through <a
href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/publications/publications.html#supervised"
target="_top">this link</a>
- </p>
+ </p>
<li> <p>
D. Oeltz
- <br>
+ <br>
<strong>Ein Raum-Zeit Dünngitterverfahren zur Diskretisierung
parabolischer Differentialgleichungen
</strong>
<li> <p>
M. Schmidt
- <br>
+ <br>
<strong>Low-dimensional I/O modeling of distributed parameter
systems
</strong>
M. Anderson, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, <a
href="http://www.cfdlab.ae.utexas.edu/labstaff/carey.php"
- target="_top">G. Carey</a>
- <br>
+ target="_top">G. Carey</a>
+ <br>
<strong>Analysis of parameter sensitivity and experimental
design for a class of nonlinear partial differential
equations
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, A. Joshi, E. Sevick-Muraca
- <br>
+ <br>
<strong>Adaptive finite element methods for increased
- resolution in fluorescence optical tomography
+ resolution in fluorescence optical tomography
</strong>
<br>
Progress in Biomedical Optics and Imaging, vol. 6,
<li> <p>
D. Boffi, L. Gastaldi, <a
href="http://www-dimat.unipv.it/heltai/" target="_top">L. Heltai</a>
- <br>
+ <br>
<strong>The finite element immersed boundary method: model, stability, and numerical
results</strong>
<br>
In Schrefler Papadrakakis, Onate, eds., Computational Methods for
Coupled Problems in Science and Engineering, 2005<p /></li>
-
+
<li> <p>
D. Boffi, L. Gastaldi, <a
href="http://www-dimat.unipv.it/heltai/" target="_top">L. Heltai</a>
- <br>
+ <br>
<strong>Stability results and algorithmic strategies for the finite
element approach to the immersed boundary method
</strong>
Proceeding of the Sixth European Conference on Numerical Mathematics
and Advanced Applications (ENUMATH 2005), pages 557-566, 2005
</p>
-
+
<li> <p>
M. Calhoun-Lopez, M. D. Gunzburger
- <br>
+ <br>
<strong>A Finite Element, Multiresolution Viscosity Method
for Hyperbolic Conservation Laws
</strong>
<li> <p>
B. Carnes, N. Djilali
- <br>
+ <br>
<strong>Systematic parameter estimation for PEM fuel cell models
</strong>
<br>
November 14-18, 2005, Rhode Saint Genese, Belgium.
<br>
von Karman Institute for Fluid Dynamics (2005)
- </p>
+ </p>
<li> <p>
A. Joshi
- <br>
+ <br>
<strong>Adaptive finite element methods for fluorescence enhanced
optical tomography
</strong>
<li> <p>
A. Joshi, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, A. B. Thompson, E. Sevick-Muraca
- <br>
+ <br>
<strong>Experimental fluorescence optical tomography using
adaptive finite elements and planar illumination with
modulated excitation light
<a
href="http://www.hsph.harvard.edu/research/bernd-oliver-kayserherold/index.html"
target="_top">O. Kayser-Herold</a>, H. G. Matthies
- <br>
+ <br>
<strong>Least squares finite element methods for fluid-structure
interaction problems
</strong>
<li> <p>
R. Li
- <br>
+ <br>
<strong>On multi-mesh h-adaptive methods</strong>
<br>
J. Sci. Comput., vol. 24, pp. 321-341, 2005
<li> <p>
M. Mu
- <br>
+ <br>
<strong>PDE.MART: A network-based problem-solving environment
for PDEs
</strong>
<li> <p>
B. Nestler, D. Danilov, P. Galenko
- <br>
+ <br>
<strong>Crystal growth of pure substances: Phase-field simulations in
comparison with analytical and experimental results
</strong>
<li> <p>
Q. Ouyang, K. Xiu
- <br>
+ <br>
<strong>Simulation Study of Reduced Self-Heating in Novel
Thin-SOI Vertical Bipolar Transistors
</strong>
<li> <p>
M. Polner
- <br>
+ <br>
<strong>Galerkin least-squares stabilization operators for the
Navier-Stokes equations, A unified approach
</strong>
<a href="http://www.dkfz-heidelberg.de/en/medphysrad/ect/team/rschulz.html"
target="_top">R. B. Schulz</a>, G. Echner, H. Ruehle,
W. Stroh, J. Vierling, T. Vogt, J. Peter, W. Semmler
- <br>
+ <br>
<strong>Development of a fully rotational non-contact fluorescence tomographer
for small animals
</strong>
<li> <p>
<a href="http://www.dkfz-heidelberg.de/en/medphysrad/ect/team/rschulz.html" target="_top">R. B. Schulz</a>, J. Peter, W. Semmler, C. D'andrea, G. Valentini, R. Cubeddu
- <br>
+ <br>
<strong>Quantifiability and Image Quality in Noncontact Fluorescence Tomography
</strong>
<br>
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>,
- <br>
+ <br>
<strong>A framework for the adaptive finite element solution
of large inverse problems. I. Basic techniques
</strong>
target="_top">W. Bangerth</a>, <a
href="http://www.math.unibas.ch/~grote/"
target="_top">M. Grote</a>, C. Hohenegger
- <br>
+ <br>
<strong>Finite Element Method For Time Dependent Scattering:
Nonreflecting Boundary Condition, Adaptivity, and Energy
Decay
<li> <p>
D. Boffi, L. Gastaldi, <a
href="http://www-dimat.unipv.it/heltai/" target="_top">L. Heltai</a>
- <br>
+ <br>
<strong> A finite element approach to the immersed boundary method
</strong>
<br>
<li> <p>
<a href="http://www.cfdlab.ae.utexas.edu/labstaff/carey.php"
target="_top">G. Carey</a>, M. Anderson, B. Carnes, B. Kirk
- <br>
+ <br>
<strong>Some aspects of adaptive grid technology related to
- boundary and interior layers
+ boundary and interior layers
</strong>
<br>
Journal of Computational and Applied Mathematics, vol. 166,
target="_top">G. Carey</a>, W. Barth, J. A. Woods, B. Kirk,
M. Anderson, S. Chow, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>
- <br>
+ <br>
<strong>Modeling error and constitutive relations in
simulation of flow and transport
</strong>
<li> <p>
S. Chow, G. F. Carey, M. L. Anderson
- <br>
+ <br>
<strong>Finite element approximations of a glaciology problem.
</strong>
<br>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
target="_top">R. Hartmann</a> and P. Houston
- <br>
+ <br>
<strong> Goal-Oriented A Posteriori Error Estimation
for Multiple Target Functionals
</strong>
Schneebeli</a>, <a
href="http://www.math.ubc.ca/~schoetzau/" target="_top">D.
Schötzau</a>
- <br>
+ <br>
<strong>Mixed finite element approximation of incompressible
- MHD problems based on weighted regularization
+ MHD problems based on weighted regularization
</strong>
<br>
Applied Numerical Mathematics, vol. 51, pp. 19-45, 2004
<li> <p>
A. Joshi, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, E. Sevick-Muraca
- <br>
+ <br>
<strong>Adaptive finite element modeling of optical
fluorescence-enhanced tomography
</strong>
<li> <p>
A. Joshi, A. B. Thompson, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, E. Sevick-Muraca
- <br>
+ <br>
<strong>Adaptive finite element methods for forward modeling
in fluorescence enhanced frequency domain optical tomography
</strong>
<li> <p>
A. Joshi, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, A. B. Thompson, E. Sevick-Muraca
- <br>
+ <br>
<strong>Adaptive finite element methods for fluorescence
enhanced frequency domain optical tomography: Forward imaging
problem
<li> <p>
J. Ramirez, M. Laso
- <br>
+ <br>
<strong>Micro-macro simulations of three-dimensional plane
contraction flow
</strong>
<a
href="http://www.dkfz-heidelberg.de/en/medphysrad/ect/team/rschulz.html"
target="_top">R. B.
- Schulz</a>, <a href="http://www.math.tamu.edu/~bangerth"
+ Schulz</a>, <a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, J. Peter, W. Semmler
- <br>
+ <br>
<strong>Independent modeling of
fluorescence excitation and emission with the finite element method
</strong>
<li> <p>
E. Zander, J. R. Weimar, H. G. Mathies
- <br>
+ <br>
<strong>Simulation of High-Frequency Atmospheric Gas Discharges
</strong>
<br>
</strong>
<br>
C/C++ Users Journal, October 2003, pp. 21-24
- </p>
+ </p>
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, R. Rannacher
- <br>
+ <br>
<strong>Adaptive Finite Element Methods for Solving Differential Equations
</strong>
<br>
<li> <p>
M. Calhoun-Lopez
- <br>
+ <br>
<strong>Numerical solutions of hyperbolic conservation laws:
Incorporating multi-resolution viscosity methods into the
finite element framework
<li> <p>
B. Carnes
- <br>
+ <br>
<strong>Adaptive finite elements for nonlinear transport equations
</strong>
<br>
</p>
<li> <p>
- J. Gopalakrishnan,
+ J. Gopalakrishnan,
<a href="http://www.math.tamu.edu/~kanschat"
target="_top">G. Kanschat</a>
<br>
</strong>
<br>
in Bathe: Computational Fluid and Solid Mechanics, pp. 1943-1945, 2003
- </p>
+ </p>
<li> <p>
- J. Gopalakrishnan,
+ J. Gopalakrishnan,
<a href="http://www.math.tamu.edu/~kanschat"
target="_top">G. Kanschat</a>
<br>
<a href="2000/gk.bib" target="body">BibTeX
entry</a>,
<a href="http://www.ima.umn.edu/preprints/dec2000/1735.ps">Postscript</a>)
- </p>
+ </p>
<li> <p>
Jay Gopalakrishnan, <a href="http://www.math.tamu.edu/~kanschat"
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
target="_top">R. Hartmann</a> and P. Houston
- <br>
+ <br>
<strong> Goal-Oriented A Posteriori Error Estimation
for Multiple Target Functionals
</strong>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
target="_top">R. Hartmann</a> and P. Houston
- <br>
+ <br>
<strong>Goal-Oriented A Posteriori Error Estimation for Compressible Fluid Flows
</strong>
<br>
SIAM J. Sci. Comput., vol. 25, pp. 815-831, 2003
</p>
-
+
<li> <p>
<a
href="http://www.math.unibas.ch/~schneeba/" target="_top">A.
Schneebeli</a>, <a
href="http://www.math.ubc.ca/~schoetzau/" target="_top">D.
Schötzau</a>
- <br>
- <strong>Mixed finite elements for incompressible magneto-hydrodynamics
+ <br>
+ <strong>Mixed finite elements for incompressible magneto-hydrodynamics
</strong>
<br>
Comptes Rendus Mathematique, vol. 337, pp. 71-74, 2003
<li> <p>
M. Stadler, G. A. Holzapfel, J. Korelc
- <br>
+ <br>
<strong>C<sup>n</sup> continuous modelling of smooth contact surfaces
using NURBS and application to 2D problems
</strong>
<a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>
<br>
- <strong> Adaptive Finite Element Methods for the
- Identification of Distributed Parameters in
+ <strong> Adaptive Finite Element Methods for the
+ Identification of Distributed Parameters in
Partial Differential Equations
</strong>
<br>
(<a href="2002/bangerth-1.html" target="body">Abstract</a>,
<a href="2002/bangerth-1.bib" target="body">BibTeX
entry</a>)
- </p>
+ </p>
<li> <p>
S. Benkler
- <br>
+ <br>
<strong>Numerical solution of the nonlinear Hartree equation.
</strong>
<br>
<a href="2000/ckss.bib" target="body">BibTeX
entry</a>,
<a href="http://www.ima.umn.edu/preprints/oct2000/1728.ps">Postscript</a>)
- </p>
+ </p>
<li> <p>
B. Cockburn,
<a href="2000/ckss.bib" target="body">BibTeX
entry</a>,
<a href="http://www.ima.umn.edu/preprints/oct2000/1728.ps">Postscript</a>)
- </p>
+ </p>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann/"
(<a href="2002/hh02b.html" target="body">Abstract</a>,
<a href="2002/hh02b.bib" target="body">BibTeX
entry</a>)
- </p>
+ </p>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann"
Methods for Nonlinear Hyperbolic Conservation Laws
</strong>
<br>
- SIAM J. Sci. Comput., vol. 24, pp. 979-1004, 2002.
+ SIAM J. Sci. Comput., vol. 24, pp. 979-1004, 2002.
<br>
(<a href="2002/hh02a.html" target="body">Abstract</a>,
<a href="2002/hh02a.bib" target="body">BibTeX
<a href="2000/ckss.bib" target="body">BibTeX
entry</a>,
<a href="http://www.ima.umn.edu/preprints/oct2000/1728.ps">Postscript</a>)
- </p>
+ </p>
<li> <p>
F. Mohamed, M. Troyer, G. Blatter
- <br>
+ <br>
<strong>Interaction of vortices in superconductors with
kappa close to 1/sqrt(2),
</strong>
<li> <p>
T. Shardlow
- <br>
+ <br>
<strong>A coupled Cahn-Hilliard particle system
</strong>
<br>
<li> <p>
M. Stadler, G. A. Holzapfel
- <br>
+ <br>
<strong>A novel approach for smooth contact surfaces using NURBS:
application to the FE simulation of stenting
</strong>
<li> <p>
A. Barinka, T. Barsch, P. Charton, A. Cohen, S. Dahlke,
W. Dahmen, K. Urban
- <br>
+ <br>
<strong>Adaptive wavelet schemes for elliptic
problems—implementation and numerical experiments
</strong>
<a href="2000/ckps.bib" target="body">BibTeX
entry</a>,
<a href="http://www.ima.umn.edu/preprints/apr2000/1695.ps">Postscript</a>)
- </p>
+ </p>
<li> <p>
T. Richter
<br>
Diploma thesis, University of Heidelberg, 2001 (in German) <br>
(<a href="2001/richter-1.html" target="body">Abstract</a>)
- </p>
+ </p>
</ol>
(<a href="2000/bangerth-1.html" target="body">Abstract</a>,
<a href="2000/bangerth-1.bib" target="body">BibTeX
entry</a>)
- </p>
+ </p>
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
<strong> Multi-threading support in deal.II
</strong>
<br>
- Preprint 2000-11 (SFB 359), IWR Heidelberg, October 1999.
+ Preprint 2000-11 (SFB 359), IWR Heidelberg, October 1999.
<br>
- This paper is also available
+ This paper is also available
<a href="../reports/multithreading/index.html" target="body">online</a>.
<br>
(<a href="2000/bangerth-2.html" target="body">Abstract</a>,
<a href="2000/bangerth-2.bib" target="body">BiBTeX entry</a>)
- </p>
+ </p>
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
Proceedings of the 16th IMACS World
Congress, Lausanne, Switzerland, 2000
<br>
- This paper is also available
+ This paper is also available
<a href="../reports/dimension-independent/index.html" target="body">online</a>.
<br>
(<a href="2000/bangerth-3.html" target="body">Abstract</a>,
<a href="2000/bangerth-3.bib" target="body">BibTeX entry</a>)
- </p>
+ </p>
<li> <p>
<a href="http://ganymed.iwr.uni-heidelberg.de/~hartmann"
(<a href="2000/hartmann-1.html" target="body">Abstract</a>,
<a href="2000/hartmann-1.bib" target="body">BibTeX
entry</a>)
- </p>
+ </p>
<li> <p>
F. Mohamed
- <br>
+ <br>
<strong>Interaction of vortices in superconductors with
kappa close to 1/sqrt(2),
</strong>
<ol>
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
- target="_top">W. Bangerth</a> and
+ target="_top">W. Bangerth</a> and
<a href="http://www.math.tamu.edu/~kanschat"
target="_top">G. Kanschat</a>
<br>
- <strong> Concepts for object-oriented finite element
+ <strong> Concepts for object-oriented finite element
software - the <CODE>deal.II</CODE> library
</strong>
<br>
(<a href="1999/bangerth-kanschat.html" target="body">Abstract</a>,
<a href="1999/bangerth-kanschat.bib" target="body">BibTeX
entry</a>)
- </p>
+ </p>
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
(<a href="1999/bangerth-rannacher-2.html" target="body">Abstract</a>,
<a href="1999/bangerth-rannacher-2.bib" target="body">BibTeX
entry</a>)
- </p>
+ </p>
<li> <p>
<a href="http://www.math.tamu.edu/~bangerth"
target="_top">W. Bangerth</a>, R. Rannacher
(<a href="1999/bangerth-rannacher-1.html" target="body">Abstract</a>,
<a href="1999/bangerth-rannacher-1.bib" target="body">BibTeX
entry</a>)
- </p>
+ </p>
<li> <p>
S. Nauber
<br>
<strong> Adaptive Finite Elemente Verfahren für
- selbstadjungierte Eigenwertprobleme
+ selbstadjungierte Eigenwertprobleme
</strong>
<br>
Diploma thesis, University of Heidelberg, 1999 (in German)
<a href="1998/bangerth.bib" target="body">BibTeX entry</a>)
</p>
</ol>
-
+
<hr>
-
+
<address>
<a href="../mail.html">The deal.II mailing list</a></address>