year={2014},
institution={Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States)}
}
+
+@BOOK{slug,
+ AUTHOR = {Blackford, L. S. and Choi, J. and Cleary, A. and
+ D'Azevedo, E. and Demmel, J. and Dhillon, I. and
+ Dongarra, J. and Hammarling, S. and Henry, G. and
+ Petitet, A. and Stanley, K. and Walker, D. and
+ Whaley, R. C.},
+ TITLE = {{ScaLAPACK} Users' Guide},
+ PUBLISHER = {Society for Industrial and Applied Mathematics},
+ YEAR = {1997},
+ ADDRESS = {Philadelphia, PA},
+ ISBN = {0-89871-397-8 (paperback)}
+}
+
+@article{geuzaine2009gmsh,
+ title={Gmsh: A 3-D finite element mesh generator with built-in pre-and post-processing facilities},
+ author={Geuzaine, Christophe and Remacle, Jean-Fran{\c{c}}ois},
+ journal={International journal for numerical methods in engineering},
+ volume={79},
+ number={11},
+ pages={1309--1331},
+ year={2009},
+ publisher={Wiley Online Library}
+}
and Coverity Scan \cite{coverity} static analysis tools for detecting bugs
and other issues in the code. For example, around 260 issues were detected and
fixed using the latter tool.
- %% > Is there somewhere we can cite for either of these tools? It would
- %% > be nice to recognize the department of homeland security for offering
- %% The contract with homeland security was completed in 2009.
\item
\texttt{LinearOperator}, a flexible template class that implements the action of a
\item New non-standard quadrature rules:
A number of non-standard, special-purpose quadrature rules have been
implemented. Among these are ones for
-(i) truncating standard formulas to simplical domains (\texttt{Qsimplex});
+(i) truncating standard formulas to simplical domains (\texttt{QSimplex});
(ii) singular transformations of the unit cell to the unit simplex
(\texttt{QDuffy});
(iii) composition of simplical quadrature rules to a combined rule on the
packages is given in Section~\ref{sec:cite}.) As part of the current
release, we have written several new interfaces as discussed in the following.
-\marginpar{Add references to all of these libraries.}
+\paragraph*{Assimp, the Open Asset Import Library.}
+ Assimp \cite{assimp} can be used to read about 40 different 3D
+ graphics formats. A subset of these formats can be now be read from
+ within \dealii to generate two-dimensional meshes, possibly embedded in
+ a three-dimensional space.
+
+% \paragraph*{Gmsh.}
+% \marginpar{Do we actually provide any functionality with the GMSH
+% executable yet? If so, complete this part}
+% Gmsh \cite{geuzaine2009gmsh}
+% The only thing we currently do is to define DEAL_II_GMSH_EXECUTABLE_PATH
+
+\paragraph*{nanoflann, a library for building and querying
+ $k$-d trees of datasets.} Operations such as finding the vertex or cell
+ closest to a given evaluation point occur frequently in many applications
+ that use unstructured meshes. While the naive algorithm is linear in the
+ number of vertices or cells, many such operations can be made significantly
+ faster by building a $k$-d tree data structure that recursively subdivides
+ a $k$ dimensional space. The nanoflann library \cite{nanoflann} provides
+ such a data structure and allows querying it, either for closest points
+ (e.g., when finding the closest vertex) or for searching the points that
+ fall within a radius of a target point. This functionality is now available
+ via \dealii interfaces.
+
+\paragraph*{ROL, a Rapid Optimization Library.}
+ ROL \cite{ridzal2014rapid} is a package for large-scale optimization.
+ \marginpar{Can we add a sentence or two about the ROL interface here?}
\paragraph*{ScaLAPACK, a parallel dense linear algebra library.}
- ScaLAPACK provides block-cyclic matrix distribution over 2D process
- grid. The functionality and interface of our wrappers is similar to
- the LAPACK wrappers for serial dense linear algebra, namely
+ ScaLAPACK \cite{slug} provides block-cyclic matrix distribution over 2D
+ process grid. The functionality and interface of our wrappers is similar
+ to the LAPACK wrappers for serial dense linear algebra, namely
matrix-matrix multiplication, Cholesky and LU factorizations,
eigensolvers, SVD, pseudoinverses, and save/load operations using
the HDF5 format. All of this functionality is available even in
Equation Solvers.}
Solving nonlinear algebraic and differential equations is both a
common task and one that often requires sophisticated globalization
- algorithms for efficiency and reliability. SUNDIALS provides these
- in a widely used format, both sequentially and in parallel.
+ algorithms for efficiency and reliability. SUNDIALS \cite{sundials}
+ provides these in a widely used format, both sequentially and in parallel.
\dealii now has interfaces to SUNDIALS's ARKode, IDA, and KINSOL sub-packages.
ARKode is a solver library that provides adaptive-step time
equations systems in the form $F(t,y,y')=0$. KINSOL is solver for nonlinear
algebraic systems.
-\paragraph*{ROL, a Rapid Optimization Library.}
-ROL is a package for large-scale optimization.
-\marginpar{Can we add a sentence or two about the ROL interface here?}
-
-\paragraph*{nanoflann, a library for building and querying
- $k$-d trees of datasets.} Operations such as finding the vertex
-or cell closest
-to a given evaluation point occur frequently in many applications that
-use unstructured meshes. While the naive algorithm is linear in the
-number of vertices or cells, many such operations can be made
-significantly faster by building a $k$-d tree data structure that
-recursively subdivides a $k$ dimensional space. The nanoflann library
-provides such a data structure and allows querying it, either for
-closest points (e.g., when finding the closest vertex) or for
-searching the points that fall within a radius of a target point. This
-functionality is now available via \dealii interfaces.
-
-\paragraph*{Assimp, the Open Asset Import Library.}
- Assimp can be used to read about 40 different 3D graphics formats. A
- subset of these formats can be now be read from within \dealii to
- generate two-dimensional meshes, possibly embedded in a
- three-dimensional space.
-
-\paragraph*{Gmsh.}
- \marginpar{Do we actually provide any functionality with the GMSH
- executable yet? If so, complete this part}
-
-
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\subsection{Use of C++11}
\label{sec:cxx11}
\item ARPACK \cite{arpack}
\item Assimp \cite{assimp}
\item BLAS and LAPACK
-\item Gmsh \cite{...}
+\item Gmsh \cite{geuzaine2009gmsh}
\item GSL \cite{gsl2016}
\item HDF5 \cite{hdf5}
\item METIS \cite{karypis1998fast}
\item p4est \cite{p4est}
\item PETSc \cite{petsc-user-ref,petsc-web-page}
\item ROL \cite{ridzal2014rapid}
-\item ScaLAPACK
+\item ScaLAPACK \cite{slug}
\item SLEPc \cite{Hernandez:2005:SSF}
\item SUNDIALS \cite{sundials}
\item TBB \cite{Rei07}
projects / release-papers.git / commitdiff