deal.II: v8.2.0 deprecated for old (Makefile based) applications

diff --git a/deal.II-toolchain/packages/superlu_dist.package b/deal.II-toolchain/packages/superlu_dist.package
index 68834a785ddfd0846b4c23b076fad05a80a0c44b..34fdb37f46f777323633455883aa40cdcd506ce9 100644 (file)
--- a/deal.II-toolchain/packages/superlu_dist.package
+++ b/deal.II-toolchain/packages/superlu_dist.package
@@ -1,9 +1,11 @@
-VERSION=4.1
+#VERSION=4.1
+VERSION=3.3
 NAME=superlu_dist_${VERSION}
 EXTRACTSTO=SuperLU_DIST_${VERSION}
 SOURCE=http://crd-legacy.lbl.gov/~xiaoye/SuperLU/
 PACKING=.tar.gz
-CHECKSUM=4edee38cc29f687bd0c8eb361096a455
+#CHECKSUM=4edee38cc29f687bd0c8eb361096a455
+CHECKSUM=f4805659157d93a962500902c219046b
 BUILDCHAIN=custom
 
 INSTALL_PATH=${INSTALL_PATH}/${NAME}
@@ -11,7 +13,8 @@ INSTALL_PATH=${INSTALL_PATH}/${NAME}
 package_specific_build() {
     cp -rf ${UNPACK_PATH}/${EXTRACTSTO}/* .
 
-    patch -p1 --forward < ${ORIG_DIR}/${PROJECT}/patches/SuperLU_DIST_4.1.patch || true
+#    patch -p1 --forward < ${ORIG_DIR}/${PROJECT}/patches/SuperLU_DIST_4.1.patch || true
+    patch -p1 --forward < ${ORIG_DIR}/${PROJECT}/patches/SuperLU_DIST_3.3.patch || true
 
     mv make.inc make.inc.bak
     #create make.inc

diff --git a/deal.II-toolchain/packages/trilinos.package b/deal.II-toolchain/packages/trilinos.package
index 9068a71f6898ba3a704242451c5a82c0eb5e4205..aad69e4475b330166157b2bc624cc944e6d01247 100644 (file)
--- a/deal.II-toolchain/packages/trilinos.package
+++ b/deal.II-toolchain/packages/trilinos.package
@@ -9,8 +9,10 @@ if [ ${TRILINOS_MAJOR_VERSION} = "AUTO" ] || [ ${TRILINOS_MAJOR_VERSION} = "12"
 
 elif [ ${TRILINOS_MAJOR_VERSION} = "11" ]; then
     SOURCE=https://trilinos.org/oldsite/download/files/
-    VERSION=11.14.3
-    CHECKSUM=b6e5d6b71f6e554de220aeda51794ffb
+#    VERSION=11.14.3
+#    CHECKSUM=b6e5d6b71f6e554de220aeda51794ffb
+    VERSION=11.12.1
+    CHECKSUM=13ec45c895d1c12b87f2d2286b27e09a
     
     #Note: For Trilinos v11 we need to force SuperLUDist=OFF,
     #      since only the deprecated SuperLUDist v3.3 together with an Amesos patch
@@ -19,8 +21,8 @@ elif [ ${TRILINOS_MAJOR_VERSION} = "11" ]; then
     #Note: This issue is resolved by setting
     #          -D HAVE_SUPERLUDIST_LUSTRUCTINIT_2ARG
     #      for Trilinos v12; this is neglegted by Trilinos v11 since it is unknown.
-    cecho ${BAD} "trilinos: warning: forcing unset SUPERLU_DIR (not supported)"
-    unset SUPERLU_DIR
+#    cecho ${BAD} "trilinos: warning: forcing unset SUPERLU_DIR (not supported)"
+#    unset SUPERLU_DIR
 
 else
     cecho ${BAD} "Unknown Trilinos version ${TRILINOS_MAJOR_VERSION} forced, please use AUTO|12|11."
@@ -131,13 +133,21 @@ CONFOPTS="${TRILINOS_CONFOPTS} \
           -D Trilinos_ENABLE_Sacado:BOOL=ON \
           -D Trilinos_ENABLE_Stratimikos:BOOL=ON \
           -D Trilinos_ENABLE_Belos:BOOL=ON \
-          -D Trilinos_ENABLE_MueLu:BOOL=ON \
-          -D Trilinos_ENABLE_Amesos2:BOOL=ON \
+          -D Trilinos_ENABLE_MueLu:BOOL=OFF \
+          -D Trilinos_ENABLE_Amesos2:BOOL=OFF \
           -D CMAKE_BUILD_TYPE:STRING=RELEASE \
           -D CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE \
           -D Trilinos_VERBOSE_CONFIGURE:BOOL=FALSE \
           -D BUILD_SHARED_LIBS:BOOL=ON"
 
+package_specific_setup() {
+    if [ ${TRILINOS_MAJOR_VERSION} = "11" ]; then
+        # Apply patch to let Trilinos/Amesos work with SuperLUDist_3.3
+        cd ${UNPACK_PATH}/${EXTRACTSTO}/packages/amesos/src
+        patch --forward Amesos_Superludist.cpp < ${ORIG_DIR}/${PROJECT}/patches/Trilinos-v11-Amesos_Superludist-v3.3.cpp.patch || true
+    fi
+}
+
 package_specific_register () {
     export TRILINOS_DIR=${INSTALL_PATH}
 }

diff --git a/deal.II-toolchain/patches/SuperLU_DIST_3.3.patch b/deal.II-toolchain/patches/SuperLU_DIST_3.3.patch
new file mode 100644 (file)
index 0000000..6e03ed0
--- /dev/null
+++ b/deal.II-toolchain/patches/SuperLU_DIST_3.3.patch
@@ -0,0 +1,264 @@
+diff -u -r -N SuperLU_DIST_3.3/SRC/dreadMM.c SuperLU_DIST_3.3.patched/SRC/dreadMM.c
+--- SuperLU_DIST_3.3/SRC/dreadMM.c     2013-04-01 02:25:32.000000000 +0200
++++ SuperLU_DIST_3.3.patched/SRC/dreadMM.c     2014-07-11 00:50:25.225586000 +0200
+@@ -8,6 +8,7 @@
+  */
+ #include <stdio.h>
+ #include "superlu_ddefs.h"
++#include "dreadrhs.h"
+ 
+ #undef EXPAND_SYM
+ 
+@@ -211,22 +212,3 @@
+ #endif
+ 
+ }
+-
+-
+-void dreadrhs(int m, double *b)
+-{
+-    FILE *fp, *fopen();
+-    int i, j;
+-
+-    if ( !(fp = fopen("b.dat", "r")) ) {
+-        fprintf(stderr, "dreadrhs: file does not exist\n");
+-      exit(-1);
+-    }
+-    for (i = 0; i < m; ++i)
+-      fscanf(fp, "%lf\n", &b[i]);
+-      /*fscanf(fp, "%d%lf\n", &j, &b[i]);*/
+-    /*        readpair_(j, &b[i]);*/
+-    fclose(fp);
+-}
+-
+-
+diff -u -r -N SuperLU_DIST_3.3/SRC/dreadrhs.c SuperLU_DIST_3.3.patched/SRC/dreadrhs.c
+--- SuperLU_DIST_3.3/SRC/dreadrhs.c    1970-01-01 01:00:00.000000000 +0100
++++ SuperLU_DIST_3.3.patched/SRC/dreadrhs.c    2014-07-11 00:50:25.220586000 +0200
+@@ -0,0 +1,17 @@
++#include "dreadrhs.h"
++
++void dreadrhs(int m, double *b)
++{
++    FILE *fp, *fopen();
++    int i, j;
++
++    if ( !(fp = fopen("b.dat", "r")) ) {
++        fprintf(stderr, "dreadrhs: file does not exist\n");
++      exit(-1);
++    }
++    for (i = 0; i < m; ++i)
++      fscanf(fp, "%lf\n", &b[i]);
++      /*fscanf(fp, "%d%lf\n", &j, &b[i]);*/
++    /*        readpair_(j, &b[i]);*/
++    fclose(fp);
++}
+diff -u -r -N SuperLU_DIST_3.3/SRC/dreadrhs.h SuperLU_DIST_3.3.patched/SRC/dreadrhs.h
+--- SuperLU_DIST_3.3/SRC/dreadrhs.h    1970-01-01 01:00:00.000000000 +0100
++++ SuperLU_DIST_3.3.patched/SRC/dreadrhs.h    2014-07-11 00:50:25.215586000 +0200
+@@ -0,0 +1,10 @@
++#ifndef _dreadrhs_h
++#define _dreadrhs_h
++
++#include <stdio.h>
++#include "superlu_ddefs.h"
++
++#undef EXPAND_SYM
++
++void dreadrhs(int m, double *b);
++#endif
+diff -u -r -N SuperLU_DIST_3.3/SRC/dreadtriple.c SuperLU_DIST_3.3.patched/SRC/dreadtriple.c
+--- SuperLU_DIST_3.3/SRC/dreadtriple.c 2013-04-01 02:25:31.000000000 +0200
++++ SuperLU_DIST_3.3.patched/SRC/dreadtriple.c 2014-07-11 00:50:25.219586000 +0200
+@@ -6,6 +6,7 @@
+  */
+ #include <stdio.h>
+ #include "superlu_ddefs.h"
++#include "dreadrhs.h"
+ 
+ #undef EXPAND_SYM
+ 
+@@ -149,22 +150,3 @@
+ 
+ }
+ 
+-
+-void dreadrhs(int m, double *b)
+-{
+-    FILE *fp, *fopen();
+-    int i, j;
+-
+-    if ( !(fp = fopen("b.dat", "r")) ) {
+-        fprintf(stderr, "dreadrhs: file does not exist\n");
+-      exit(-1);
+-    }
+-    for (i = 0; i < m; ++i)
+-      fscanf(fp, "%lf\n", &b[i]);
+-      /*fscanf(fp, "%d%lf\n", &j, &b[i]);*/
+-    /*        readpair_(j, &b[i]);*/
+-
+-    fclose(fp);
+-}
+-
+-
+diff -u -r -N SuperLU_DIST_3.3/SRC/Makefile SuperLU_DIST_3.3.patched/SRC/Makefile
+--- SuperLU_DIST_3.3/SRC/Makefile      2013-04-01 02:25:31.000000000 +0200
++++ SuperLU_DIST_3.3.patched/SRC/Makefile      2014-07-11 00:50:25.218586000 +0200
+@@ -43,12 +43,12 @@
+ DSLUSRC       = dlangs.o dgsequ.o dlaqgs.o dutil.o \
+         dmemory.o dmyblas2.o dsp_blas2.o dsp_blas3.o
+ ZSLUSRC       = dcomplex.o zlangs.o zgsequ.o zlaqgs.o zutil.o \
+-        zmemory.o zmyblas2.o dmemory.o zsp_blas2.o zsp_blas3.o
++        zmemory.o zmyblas2.o zsp_blas2.o zsp_blas3.o
+ 
+ #
+ # Routines for double precision parallel SuperLU
+ # DPLUSRC = dldperm.o ddistribute.o pdgstrf.o pdgstrs_Bglobal.o 
+-DPLUSRC = dldperm.o ddistribute.o pdgstrf.o pdgstrs_Bglobal.o \
++DPLUSRC = dreadrhs.o dldperm.o ddistribute.o pdgstrf.o pdgstrs_Bglobal.o \
+         pdgstrs1.o pdgssvx_ABglobal.o pdgsrfs_ABXglobal.o pdgsmv_AXglobal.o\
+         pdgssvx.o pdgstrs.o pddistribute.o pdlangs.o pdutil.o \
+         pdgsequ.o pdlaqgs.o pdgsrfs.o pdgsmv.o pdgstrs_lsum.o \
+@@ -57,23 +57,28 @@
+ #
+ # Routines for double complex parallel SuperLU
+ # ZPLUSRC = zldperm.o zdistribute.o pzgssvx_ABglobal.o pzgstrf_irecv.o
+-ZPLUSRC = zldperm.o zdistribute.o pzgssvx_ABglobal.o pzgstrf.o \
++ZPLUSRC = zreadrhs.o zldperm.o zdistribute.o pzgssvx_ABglobal.o pzgstrf.o \
+         pzgstrs1.o pzgstrs_Bglobal.o pzgsrfs_ABXglobal.o pzgsmv_AXglobal.o \
+         pzgssvx.o pzgstrs.o pzdistribute.o pzlangs.o pzutil.o \
+         pzgsequ.o pzlaqgs.o pzgsrfs.o pzgsmv.o pzgstrs_lsum.o \
+         pzsymbfact_distdata.o zreadhb.o zreadtriple.o zreadMM.o
+ 
+-all:  double complex16
++all:  double complex16 shared
+ 
+ double: $(DSLUSRC) $(DPLUSRC) $(ALLAUX) $(LAAUX)
+-      $(ARCH) $(ARCHFLAGS) $(DSUPERLULIB) \
++      $(ARCH) $(ARCHFLAGS) $(DSUPERLULIB).a \
+               $(DSLUSRC) $(DPLUSRC) $(ALLAUX) $(LAAUX)
+-      $(RANLIB) $(DSUPERLULIB)
++      $(RANLIB) $(DSUPERLULIB).a
+ 
+ complex16: $(ZSLUSRC) $(ZPLUSRC) $(ALLAUX) $(LAAUX)
+-      $(ARCH) $(ARCHFLAGS) $(DSUPERLULIB) \
+-              $(ZSLUSRC) $(ZPLUSRC) $(ALLAUX) $(LAAUX)
+-      $(RANLIB) $(DSUPERLULIB)
++      $(ARCH) $(ARCHFLAGS) $(DSUPERLULIB).a \
++              $(ZSLUSRC)  dmemory.o $(ZPLUSRC) $(ALLAUX) $(LAAUX)
++      $(RANLIB) $(DSUPERLULIB).a
++
++# link shared library
++shared: $(DSLUSRC) $(DPLUSRC) $(ZSLUSRC) $(ZPLUSRC) $(ALLAUX) $(LAAUX)
++      $(CC) -shared -Wl,-soname,$(DSUPERLULIBNAME).so -o $(DSUPERLULIB).so \
++              $(DSLUSRC) $(DPLUSRC) $(ZSLUSRC) $(ZPLUSRC) $(ALLAUX) $(LAAUX)
+ 
+ 
+ ##################################
+@@ -90,6 +95,6 @@
+       $(FORTRAN) $(FFLAGS) -c $< $(VERBOSE)
+ 
+ clean:        
+-      rm -f *.o $(DSUPERLULIB)
++      rm -f *.o $(DSUPERLULIB).a $(DSUPERLULIB).so
+ 
+ 
+diff -u -r -N SuperLU_DIST_3.3/SRC/zreadMM.c SuperLU_DIST_3.3.patched/SRC/zreadMM.c
+--- SuperLU_DIST_3.3/SRC/zreadMM.c     2013-04-01 02:25:31.000000000 +0200
++++ SuperLU_DIST_3.3.patched/SRC/zreadMM.c     2014-07-11 00:50:25.222586000 +0200
+@@ -7,6 +7,7 @@
+  */
+ #include <stdio.h>
+ #include "superlu_zdefs.h"
++#include "zreadrhs.h"
+ 
+ #undef EXPAND_SYM
+ 
+@@ -210,20 +211,3 @@
+ #endif
+ 
+ }
+-
+-
+-void zreadrhs(int m, doublecomplex *b)
+-{
+-    FILE *fp, *fopen();
+-    int i, j;
+-
+-    if ( !(fp = fopen("b.dat", "r")) ) {
+-        fprintf(stderr, "zreadrhs: file does not exist\n");
+-      exit(-1);
+-    }
+-    for (i = 0; i < m; ++i)
+-      fscanf(fp, "%lf\n", &b[i].r, &b[i].i);
+-    fclose(fp);
+-}
+-
+-
+diff -u -r -N SuperLU_DIST_3.3/SRC/zreadrhs.c SuperLU_DIST_3.3.patched/SRC/zreadrhs.c
+--- SuperLU_DIST_3.3/SRC/zreadrhs.c    1970-01-01 01:00:00.000000000 +0100
++++ SuperLU_DIST_3.3.patched/SRC/zreadrhs.c    2014-07-11 00:50:25.224586000 +0200
+@@ -0,0 +1,16 @@
++#include "zreadrhs.h"
++
++void zreadrhs(int m, doublecomplex *b)
++{
++    FILE *fp, *fopen();
++    int i, j;
++
++    if ( !(fp = fopen("b.dat", "r")) ) {
++        fprintf(stderr, "zreadrhs: file does not exist\n");
++      exit(-1);
++    }
++    for (i = 0; i < m; ++i)
++      fscanf(fp, "%lf%lf\n", &(b[i].r), &(b[i].i));
++
++    fclose(fp);
++}
+diff -u -r -N SuperLU_DIST_3.3/SRC/zreadrhs.h SuperLU_DIST_3.3.patched/SRC/zreadrhs.h
+--- SuperLU_DIST_3.3/SRC/zreadrhs.h    1970-01-01 01:00:00.000000000 +0100
++++ SuperLU_DIST_3.3.patched/SRC/zreadrhs.h    2014-07-11 00:50:25.226586000 +0200
+@@ -0,0 +1,10 @@
++#ifndef _zreadrhs_h
++#define _zreadrhs_h
++
++#include <stdio.h>
++#include "superlu_zdefs.h"
++
++#undef EXPAND_SYM
++
++void zreadrhs(int m, doublecomplex *b);
++#endif
+diff -u -r -N SuperLU_DIST_3.3/SRC/zreadtriple.c SuperLU_DIST_3.3.patched/SRC/zreadtriple.c
+--- SuperLU_DIST_3.3/SRC/zreadtriple.c 2013-04-01 02:25:32.000000000 +0200
++++ SuperLU_DIST_3.3.patched/SRC/zreadtriple.c 2014-07-11 00:50:25.225586000 +0200
+@@ -5,6 +5,7 @@
+  */
+ #include <stdio.h>
+ #include "superlu_zdefs.h"
++#include "zreadrhs.h"
+ 
+ #undef EXPAND_SYM
+ 
+@@ -147,21 +148,3 @@
+ #endif
+ 
+ }
+-
+-
+-void zreadrhs(int m, doublecomplex *b)
+-{
+-    FILE *fp, *fopen();
+-    int i, j;
+-
+-    if ( !(fp = fopen("b.dat", "r")) ) {
+-        fprintf(stderr, "zreadrhs: file does not exist\n");
+-      exit(-1);
+-    }
+-    for (i = 0; i < m; ++i)
+-      fscanf(fp, "%lf%lf\n", &(b[i].r), &(b[i].i));
+-
+-    fclose(fp);
+-}
+-
+-

diff --git a/project-deal.II-toolchain.cfg b/project-deal.II-toolchain.cfg
index 4d1a7f3c54e34d1f5444a848c29a8f5bf4100861..8c331df29406b85a038f821c75f9fd4f5b0ff939 100644 (file)
--- a/project-deal.II-toolchain.cfg
+++ b/project-deal.II-toolchain.cfg
@@ -31,6 +31,7 @@ MIRROR="https://www.ces.clemson.edu/dealii/mirror/"
 #Choose configuration and components of deal.II
 DEAL_CONFOPTS=" \
 -D DEAL_II_COMPONENT_PARAMETER_GUI=OFF \
+-D DEAL_II_COMPONENT_COMPAT_FILES:BOOL=ON \
 "
 
 PACKAGES="load:dealii-prepare"
@@ -39,13 +40,13 @@ PACKAGES="${PACKAGES} once:parmetis once:superlu_dist"
 PACKAGES="${PACKAGES} once:hdf5"
 PACKAGES="${PACKAGES} once:p4est"
 PACKAGES="${PACKAGES} once:trilinos"
-PACKAGES="${PACKAGES} once:petsc once:slepc"
+#PACKAGES="${PACKAGES} once:petsc once:slepc"
 PACKAGES="${PACKAGES} dealii"
 
 #########################################################################
 
 # Install the following deal.II version:
-DEAL_II_VERSION=v8.3.0
+DEAL_II_VERSION=v8.2.0
 
 # Would you like to build stable version of deal.II?
 # If STABLE_BUILD=false, then the development version of deal.II will be
@@ -62,7 +63,7 @@ fi
 # If you want to use Trilions, decide if you want v12.x.x (AUTO) or v11.x.x
 TRILINOS_MAJOR_VERSION=AUTO
 #TRILINOS_MAJOR_VERSION=12
-#TRILINOS_MAJOR_VERSION=11
+TRILINOS_MAJOR_VERSION=11
 
 #########################################################################