> Adaptivity in 3d Elastoplasticity Problems".
> International Journal of Fracture. Accepted. 2016.
+
+### Running the code
+
+The code contains several examples consisting of the three examples presented in the aforementioned paper. To run each of them you can switch to them, e.g.
+```
+git checkout Thick_tube_internal_pressure
+
+git checkout Perforated_strip_displacement_3d
+
+git checkout Cantiliver_II_beam_3d
+```
+
+Then by compiling it using the following commands
+```
+cmake -DDEAL_II_DIR=/path/to/deal.II .
+make
+```
+you can run it by typing
+```
+./elastoplastic Thick_tube_internal_pressure.prm
+```
+or
+```
+./elastoplastic Perforated_strip_displacement_3d.prm
+```
+or
+```
+./elastoplastic Cantiliver_II_beam_3d.prm
+```
+
+The three named input files are already in the current directory, and
+have the following options:
+```
+set polynomial degree [defines the polynomial order of
+ the (primal) problem]
+
+set number of initial refinements [defines how many times the mesh
+ is globally refined to construct
+ the initial mesh]
+
+set refinement strategy [can be chosen as global for
+ global refinement or percentage
+ in order to mesh adaptation with
+ the assumption of refinement of
+ 30% of the elements with higher
+ errors and coarsening of 3% of
+ element with the least errors
+ (these percentages can be
+ changed inside the code)]
+
+set error estimation strategy [can be set kelly_error or
+ residual_error or
+ weighted_residual_error to apply
+ different error estimation
+ methods (see the paper for more
+ information)]
+
+set maximum relative error [set a criterion value for
+ perfoming the mesh adaptivity]
+
+set output directory [determine a directory to save
+ the output results]
+
+set transfer solution [by assuming true, the solution
+ variables at each step are
+ transferred to the next
+ load/displacement step]
+
+set base mesh [determines the problem:
+ Timoshenko beam /
+ Thick_tube_internal_pressure /
+ Perforated_strip_tension /
+ Cantiliver_beam_3d]
+
+set elasticity modulus
+
+set Poissons ratio
+
+set yield stress
+
+set isotropic hardening parameter
+
+set show stresses [by setting true or false,
+ determines if the stress results
+ be saved or not (to save the
+ analysis time, we can set it as
+ false when we do not need to
+ illustrate them)]
+```