From: Jiaqi Zhang Date: Sun, 27 Mar 2022 17:16:43 +0000 (-0400) Subject: fix negative measure on a tri mesh X-Git-Tag: v9.4.0-rc1~336^2~2 X-Git-Url: https://gitweb.dealii.org/cgi-bin/gitweb.cgi?a=commitdiff_plain;h=385b83989b910c97a2c8129753e4cfb3b54c8781;p=dealii.git fix negative measure on a tri mesh --- diff --git a/source/grid/grid_in.cc b/source/grid/grid_in.cc index 69203c35f4..d249afc9de 100644 --- a/source/grid/grid_in.cc +++ b/source/grid/grid_in.cc @@ -2691,6 +2691,11 @@ GridIn::read_msh(std::istream &in) GridTools::invert_cells_with_negative_measure(vertices, cells); GridTools::consistently_order_cells(cells); } + else if (is_tria_or_tet_mesh) + { + if (dim == spacedim) + GridTools::invert_cells_with_negative_measure(vertices, cells); + } tria->create_triangulation(vertices, cells, subcelldata); // in 1d, we also have to attach boundary ids to vertices, which does not diff --git a/source/grid/grid_tools.cc b/source/grid/grid_tools.cc index c0961adac3..d294c10e08 100644 --- a/source/grid/grid_tools.cc +++ b/source/grid/grid_tools.cc @@ -872,34 +872,60 @@ namespace GridTools std::size_t n_negative_cells = 0; for (auto &cell : cells) { - Assert(cell.vertices.size() == - ReferenceCells::get_hypercube().n_vertices(), - ExcNotImplemented()); - const ArrayView vertices(cell.vertices); - if (GridTools::cell_measure(all_vertices, vertices) < 0) + if (cell.vertices.size() == + ReferenceCells::get_hypercube().n_vertices()) { - ++n_negative_cells; - - // TODO: this only works for quads and hexes - if (dim == 2) + const ArrayView vertices(cell.vertices); + if (GridTools::cell_measure(all_vertices, vertices) < 0) { - // flip the cell across the y = x line in 2D - std::swap(cell.vertices[1], cell.vertices[2]); + ++n_negative_cells; + + // TODO: this only works for quads and hexes + if (dim == 2) + { + // flip the cell across the y = x line in 2D + std::swap(cell.vertices[1], cell.vertices[2]); + } + else if (dim == 3) + { + // swap the front and back faces in 3D + std::swap(cell.vertices[0], cell.vertices[2]); + std::swap(cell.vertices[1], cell.vertices[3]); + std::swap(cell.vertices[4], cell.vertices[6]); + std::swap(cell.vertices[5], cell.vertices[7]); + } + + // Check whether the resulting cell is now ok. + // If not, then the grid is seriously broken and + // we just give up. + AssertThrow(GridTools::cell_measure(all_vertices, vertices) > 0, + ExcInternalError()); } - else if (dim == 3) + } + else if (cell.vertices.size() == + ReferenceCells::get_simplex().n_vertices()) + { + const ArrayView vertices(cell.vertices); + if (GridTools::cell_measure(all_vertices, vertices) < 0) { - // swap the front and back faces in 3D - std::swap(cell.vertices[0], cell.vertices[2]); - std::swap(cell.vertices[1], cell.vertices[3]); - std::swap(cell.vertices[4], cell.vertices[6]); - std::swap(cell.vertices[5], cell.vertices[7]); + ++n_negative_cells; + if (dim == 2) + { + // Triangular mesh, swap any two vertices + std::swap(cell.vertices[1], cell.vertices[2]); + AssertThrow(GridTools::cell_measure(all_vertices, + vertices) > 0, + ExcInternalError()); + } + else + { + Assert(false, ExcNotImplemented()); + } } - - // Check whether the resulting cell is now ok. - // If not, then the grid is seriously broken and - // we just give up. - AssertThrow(GridTools::cell_measure(all_vertices, vertices) > 0, - ExcInternalError()); + } + else + { + Assert(false, ExcNotImplemented()); } } return n_negative_cells; diff --git a/source/grid/grid_tools_nontemplates.cc b/source/grid/grid_tools_nontemplates.cc index 38f9d14cc2..03e867d3cc 100644 --- a/source/grid/grid_tools_nontemplates.cc +++ b/source/grid/grid_tools_nontemplates.cc @@ -57,8 +57,8 @@ namespace GridTools all_vertices[vertex_indices[1]](1), all_vertices[vertex_indices[2]](1)}; - return 0.5 * std::abs((x[0] - x[2]) * (y[1] - y[0]) - - (x[0] - x[1]) * (y[2] - y[0])); + return 0.5 * + ((x[0] - x[2]) * (y[1] - y[0]) - (x[1] - x[0]) * (y[0] - y[2])); } AssertDimension(vertex_indices.size(), GeometryInfo<2>::vertices_per_cell); diff --git a/tests/grid/grid_in_gmsh_03.cc b/tests/grid/grid_in_gmsh_03.cc new file mode 100644 index 0000000000..e9ccacfad5 --- /dev/null +++ b/tests/grid/grid_in_gmsh_03.cc @@ -0,0 +1,89 @@ +// --------------------------------------------------------------------- +// +// Copyright (C) 2016 - 2022 by the deal.II authors +// +// This file is part of the deal.II library. +// +// The deal.II library is free software; you can use it, redistribute +// it, and/or modify it under the terms of the GNU Lesser General +// Public License as published by the Free Software Foundation; either +// version 2.1 of the License, or (at your option) any later version. +// The full text of the license can be found in the file LICENSE.md at +// the top level directory of deal.II. +// +// --------------------------------------------------------------------- + +// Test loading a .msh file from gmsh with some triangular cells having +// negative volume + +#include +#include +#include +#include +#include +#include +#include +#include + +#include +#include +#include + +#include "../tests.h" + +using namespace dealii; + + +template +void +print_mesh_info(const Triangulation &triangulation, + const std::string & filename) +{ + deallog << "Mesh info:" << std::endl + << " dimension: " << dim << std::endl + << " no. of cells: " << triangulation.n_active_cells() << std::endl; + + { + std::map boundary_count; + for (const auto &face : triangulation.active_face_iterators()) + if (face->at_boundary()) + boundary_count[face->boundary_id()]++; + + deallog << " boundary indicators: "; + for (const std::pair &pair : + boundary_count) + { + deallog << pair.first << "(" << pair.second << " times) "; + } + deallog << std::endl; + } + + // Finally, produce a graphical representation of the mesh to an output + // file: + std::ofstream out(filename); + GridOut grid_out; + grid_out.write_vtu(triangulation, out); + deallog << " written to " << filename << std::endl << std::endl; +} + + +void +grid() +{ + Triangulation<2> triangulation; + + GridIn<2> gridin; + gridin.attach_triangulation(triangulation); + std::ifstream f(SOURCE_DIR "/grid_in_gmsh_03.msh"); + gridin.read_msh(f); + + print_mesh_info(triangulation, "grid.vtu"); +} + + +int +main() +{ + initlog(); + grid(); +} diff --git a/tests/grid/grid_in_gmsh_03.geo b/tests/grid/grid_in_gmsh_03.geo new file mode 100644 index 0000000000..a09a181ad6 --- /dev/null +++ b/tests/grid/grid_in_gmsh_03.geo @@ -0,0 +1,27 @@ +Point (2) = {0, 0, 0 ,0.1 }; +Point (3) = {2, 0, 0 ,0.1 }; +Point (4) = {0, 2, 0 ,0.1 }; +Point (5) = {2, 2, 0 ,0.1 }; +Point (6) = {1, 0, 0 ,0.1 }; +Point (7) = {0, 1, 0 ,0.1 }; + +Line (2) = {2, 7 }; +Line (3) = {7, 4 }; +Line (4) = {4, 5 }; +Line (5) = {5, 3 }; +Line (6) = {3, 6 }; +Line (7) = {6, 2 }; + +Circle(8) = {6, 2, 7}; +Curve Loop(1) = {7, 2, -8}; +Plane Surface(1) = {1}; + +Curve Loop(2) = {8, 3, 4, 5, 6}; +Plane Surface(2) = {2}; + +Physical Curve("1", 10) = {2, 7, 6, 5, 4, 3}; +Physical Surface("1", 9) = {2, 1}; + + + + diff --git a/tests/grid/grid_in_gmsh_03.msh b/tests/grid/grid_in_gmsh_03.msh new file mode 100644 index 0000000000..d3ebad340d --- /dev/null +++ b/tests/grid/grid_in_gmsh_03.msh @@ -0,0 +1,2185 @@ +$MeshFormat +4.1 0 8 +$EndMeshFormat +$PhysicalNames +2 +1 10 "1" +2 9 "1" +$EndPhysicalNames +$Entities +6 7 2 0 +2 0 0 0 0 +3 2 0 0 0 +4 0 2 0 0 +5 2 2 0 0 +6 1 0 0 0 +7 0 1 0 0 +2 0 0 0 0 1 0 1 10 2 2 -7 +3 0 1 0 0 2 0 1 10 2 7 -4 +4 0 2 0 2 2 0 1 10 2 4 -5 +5 2 0 0 2 2 0 1 10 2 5 -3 +6 1 0 0 2 0 0 1 10 2 3 -6 +7 0 0 0 1 0 0 1 10 2 6 -2 +8 5.551115123125783e-17 0 0 1 1 0 0 2 6 -7 +1 0 0 0 1 1 0 1 9 3 7 2 -8 +2 0 0 0 2 2 0 1 9 5 8 3 4 5 6 +$EndEntities +$Nodes +15 533 1 533 +0 2 0 1 +1 +0 0 0 +0 3 0 1 +2 +2 0 0 +0 4 0 1 +3 +0 2 0 +0 5 0 1 +4 +2 2 0 +0 6 0 1 +5 +1 0 0 +0 7 0 1 +6 +0 1 0 +1 2 0 9 +7 +8 +9 +10 +11 +12 +13 +14 +15 +0 0.09999999999981467 0 +0 0.1999999999995579 0 +0 0.2999999999992664 0 +0 0.3999999999989749 0 +0 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444 +1038 353 521 376 +1039 3 532 24 +1040 25 532 3 +1041 383 526 305 +1042 376 524 338 +1043 192 527 362 +1044 473 531 194 +1045 358 533 359 +1046 511 529 392 +1047 491 530 335 +1048 477 515 205 +1049 479 516 206 +1050 327 510 487 +1051 475 517 324 +1052 475 527 192 +1053 178 528 498 +1054 511 527 347 +1055 487 510 368 +1056 305 526 504 +1057 348 525 501 +1058 202 529 488 +1059 339 522 489 +1060 501 525 422 +1061 498 528 350 +1062 362 527 511 +1063 506 532 25 +1064 347 529 511 +$EndElements \ No newline at end of file diff --git a/tests/grid/grid_in_gmsh_03.output b/tests/grid/grid_in_gmsh_03.output new file mode 100644 index 0000000000..601e10b253 --- /dev/null +++ b/tests/grid/grid_in_gmsh_03.output @@ -0,0 +1,7 @@ + +DEAL::Mesh info: +DEAL:: dimension: 2 +DEAL:: no. of cells: 984 +DEAL:: boundary indicators: 10(80 times) +DEAL:: written to grid.vtu +DEAL::