From: Guido Kanschat Date: Sat, 4 Jul 2015 12:25:11 +0000 (+0200) Subject: VTK and VTU output in GridOut restructured to use iterator ranges internally X-Git-Tag: v8.3.0-rc1~60^2~5 X-Git-Url: https://gitweb.dealii.org/cgi-bin/gitweb.cgi?a=commitdiff_plain;h=9c9787445d002cd7feabd83135ee415350ef1f1d;p=dealii.git VTK and VTU output in GridOut restructured to use iterator ranges internally Add output of level number, material id, and subdomain ids --- diff --git a/doc/news/changes.h b/doc/news/changes.h index ff5aad8054..a3b6646cac 100644 --- a/doc/news/changes.h +++ b/doc/news/changes.h @@ -541,6 +541,12 @@ inconvenience this causes.
    +
  1. Improved: GridOut::write_vtk() and GridOut::write_vtu() now + output material id, level and subdomain ids of the cells. +
    + (Guido Kanschat, 2015/07/05) +
    2. +
  2. New: GridGenerator::cheese() for a mesh with many holes; GridGenerator::simplex() for simplices in 2 and 3 dimensions; GridGenerator::hyper_cross() for crosses in 2 and 3 dimensions. diff --git a/source/base/data_out_base.cc b/source/base/data_out_base.cc index 57e3ca85d0..6892437529 100644 --- a/source/base/data_out_base.cc +++ b/source/base/data_out_base.cc @@ -4656,17 +4656,15 @@ namespace DataOutBase const unsigned int n_data_sets = data_names.size(); // check against # of data sets in - // first patch. checks against all - // other patches are made in - // write_gmv_reorder_data_vectors - Assert ((patches[0].data.n_rows() == n_data_sets && !patches[0].points_are_available) || - (patches[0].data.n_rows() == n_data_sets+spacedim && patches[0].points_are_available), - ExcDimensionMismatch (patches[0].points_are_available - ? - (n_data_sets + spacedim) - : - n_data_sets, - patches[0].data.n_rows())); + // first patch. + if (patches[0].points_are_available) + { + AssertDimension(n_data_sets + spacedim, patches[0].data.n_rows()) + } + else + { + AssertDimension(n_data_sets, patches[0].data.n_rows()) + } /////////////////////// // preamble @@ -5081,15 +5079,14 @@ namespace DataOutBase // first patch. checks against all // other patches are made in // write_gmv_reorder_data_vectors - Assert ((patches[0].data.n_rows() == n_data_sets && !patches[0].points_are_available) || - (patches[0].data.n_rows() == n_data_sets+spacedim && patches[0].points_are_available), - ExcDimensionMismatch (patches[0].points_are_available - ? - (n_data_sets + spacedim) - : - n_data_sets, - patches[0].data.n_rows())); - + if (patches[0].points_are_available) + { + AssertDimension(n_data_sets + spacedim, patches[0].data.n_rows()) + } + else + { + AssertDimension(n_data_sets, patches[0].data.n_rows()) + } #ifdef DEAL_II_WITH_ZLIB const char *ascii_or_binary = "binary"; diff --git a/source/grid/grid_out.cc b/source/grid/grid_out.cc index ee2ef0a984..73efbe4b41 100644 --- a/source/grid/grid_out.cc +++ b/source/grid/grid_out.cc @@ -2422,32 +2422,43 @@ namespace * A function that is able to convert each cell of a triangulation into * a patch that can then be output by the functions in DataOutBase. * This is made particularly simple because the patch only needs to - * contain geometry info -- we attach no data at all + * contain geometry info and additional properties of cells */ - template - std::vector > - triangulation_to_patches (const Triangulation &triangulation) + template + void + generate_triangulation_patches (std::vector > &patches, + ITERATOR cell, END end) { - std::vector > patches; - patches.reserve (triangulation.n_active_cells()); - // convert each of the active cells into a patch - for (typename Triangulation::active_cell_iterator cell = triangulation.begin_active(); - cell != triangulation.end(); ++cell) + for (; cell != end; ++cell) { DataOutBase::Patch patch; patch.n_subdivisions = 1; + patch.data.reinit (4,GeometryInfo::vertices_per_cell); for (unsigned int v=0; v::vertices_per_cell; ++v) - patch.vertices[v] = cell->vertex(v); - - // no data - patch.data.reinit (0,0); - + { + patch.vertices[v] = cell->vertex(v); + patch.data(0, v) = cell->level(); + patch.data(1, v) = cell->material_id(); + if (!cell->has_children()) + patch.data(2, v) = cell->subdomain_id(); + else + patch.data(2, v) = -1; + patch.data(3, v) = cell->level_subdomain_id(); + } patches.push_back (patch); } + } - return patches; + std::vector triangulation_patch_data_names () + { + std::vector v(4); + v[0] = "level"; + v[1] = "material"; + v[2] = "leaf_subdomain"; + v[3] = "level_subdomain"; + return v; } } @@ -2463,8 +2474,11 @@ void GridOut::write_vtk (const Triangulation &tria, // and then have them output. since there is no data attached to // the geometry, we also do not have to provide any names, identifying // information, etc. - DataOutBase::write_vtk (triangulation_to_patches(tria), - std::vector(), + std::vector > patches; + patches.reserve (tria.n_active_cells()); + generate_triangulation_patches(patches, tria.begin_active(), tria.end()); + DataOutBase::write_vtk (patches, + triangulation_patch_data_names(), std::vector >(), vtk_flags, out); @@ -2484,8 +2498,11 @@ void GridOut::write_vtu (const Triangulation &tria, // and then have them output. since there is no data attached to // the geometry, we also do not have to provide any names, identifying // information, etc. - DataOutBase::write_vtu (triangulation_to_patches(tria), - std::vector(), + std::vector > patches; + patches.reserve (tria.n_active_cells()); + generate_triangulation_patches(patches, tria.begin_active(), tria.end()); + DataOutBase::write_vtu (patches, + triangulation_patch_data_names(), std::vector >(), vtu_flags, out); diff --git a/tests/deal.II/grid_out_06.cc b/tests/deal.II/grid_out_06.cc index dd03b2299c..247cd8b82d 100644 --- a/tests/deal.II/grid_out_06.cc +++ b/tests/deal.II/grid_out_06.cc @@ -32,15 +32,17 @@ #include -std::ofstream logfile("output"); - - template -void test () +void test (std::ostream& logfile) { Triangulation tria; - GridGenerator::hyper_cube (tria); - tria.refine_global (1); + std::vector legs(2*dim, 1); + if (dim > 1) + GridGenerator::hyper_cross (tria, legs, true); + else + GridGenerator::subdivided_hyper_cube(tria, 2); + tria.begin_active()->set_refine_flag(); + tria.execute_coarsening_and_refinement(); GridOut grid_out; grid_out.write_vtk (tria, logfile); @@ -49,16 +51,11 @@ void test () int main () { - deallog << std::setprecision (2); - logfile << std::setprecision (2); - deallog.attach(logfile); - deallog.depth_console(0); - deallog.threshold_double(1.e-10); - - test<1,1> (); - test<1,2> (); - test<2,2> (); - test<2,3> (); - test<3,3> (); + initlog("output"); + test<1,1> (deallog.get_file_stream()); + test<1,2> (deallog.get_file_stream()); + test<2,2> (deallog.get_file_stream()); + test<2,3> (deallog.get_file_stream()); + test<3,3> (deallog.get_file_stream()); } diff --git a/tests/deal.II/grid_out_06.output b/tests/deal.II/grid_out_06.output index 13bdc060dd..69104988d9 100644 --- a/tests/deal.II/grid_out_06.output +++ b/tests/deal.II/grid_out_06.output @@ -4,173 +4,315 @@ ASCII DATASET UNSTRUCTURED_GRID -POINTS 4 double -0.0 0 0 -0.50 0 0 -0.50 0 0 -1.0 0 0 +POINTS 6 double +0.500000 0 0 +1.00000 0 0 +0.00000 0 0 +0.250000 0 0 +0.250000 0 0 +0.500000 0 0 -CELLS 2 6 +CELLS 3 9 2 0 1 2 2 3 +2 4 5 -CELL_TYPES 2 - 3 3 -POINT_DATA 4 +CELL_TYPES 3 + 3 3 3 +POINT_DATA 6 +SCALARS level double 1 +LOOKUP_TABLE default +0.00000 0.00000 1.00000 1.00000 1.00000 1.00000 +SCALARS material double 1 +LOOKUP_TABLE default +0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 +SCALARS leaf_subdomain double 1 +LOOKUP_TABLE default +0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 +SCALARS level_subdomain double 1 +LOOKUP_TABLE default +0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # vtk DataFile Version 3.0 #This file was generated ASCII DATASET UNSTRUCTURED_GRID -POINTS 4 double -0.0 0.0 0 -0.50 0.0 0 -0.50 0.0 0 -1.0 0.0 0 +POINTS 6 double +0.500000 0.00000 0 +1.00000 0.00000 0 +0.00000 0.00000 0 +0.250000 0.00000 0 +0.250000 0.00000 0 +0.500000 0.00000 0 -CELLS 2 6 +CELLS 3 9 2 0 1 2 2 3 +2 4 5 -CELL_TYPES 2 - 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- template -void test () +void test (std::ostream& logfile) { Triangulation tria; - GridGenerator::hyper_cube (tria); - tria.refine_global (1); + std::vector legs(2*dim, 1); + if (dim > 1) + GridGenerator::hyper_cross (tria, legs, true); + else + GridGenerator::subdivided_hyper_cube(tria, 2); + tria.begin_active()->set_refine_flag(); + tria.execute_coarsening_and_refinement(); GridOut grid_out; grid_out.write_vtu (tria, logfile); @@ -49,16 +51,11 @@ void test () int main () { - deallog << std::setprecision (2); - logfile << std::setprecision (2); - deallog.attach(logfile); - deallog.depth_console(0); - deallog.threshold_double(1.e-10); - - test<1,1> (); - test<1,2> (); - test<2,2> (); - test<2,3> (); - test<3,3> (); + initlog("output"); + test<1,1> (deallog.get_file_stream()); + test<1,2> (deallog.get_file_stream()); + test<2,2> (deallog.get_file_stream()); + test<2,3> (deallog.get_file_stream()); + test<3,3> (deallog.get_file_stream()); } diff --git a/tests/deal.II/grid_out_07.with_zlib=on.output b/tests/deal.II/grid_out_07.with_zlib=on.output index 75378b48ba..d7fb9b83a8 100644 --- a/tests/deal.II/grid_out_07.with_zlib=on.output +++ b/tests/deal.II/grid_out_07.with_zlib=on.output @@ -6,25 +6,33 @@ --> - 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