From: Jan Philipp Thiele Date: Thu, 29 Aug 2024 07:54:29 +0000 (+0200) Subject: Add information about Trilinos stacks X-Git-Url: https://gitweb.dealii.org/cgi-bin/gitweb.cgi?a=commitdiff_plain;h=cb7d0aeffd5dd13b962c136395db5c51a7da7db9;p=release-papers.git Add information about Trilinos stacks --- diff --git a/9.6/paper.tex b/9.6/paper.tex index a88ff36..42254f6 100644 --- a/9.6/paper.tex +++ b/9.6/paper.tex @@ -46,8 +46,6 @@ \newcommand{\dealii}{{\specialword{deal.II}}\xspace} \newcommand{\pfrst}{{\specialword{p4est}}\xspace} \newcommand{\trilinos}{{\specialword{Trilinos}}\xspace} -\newcommand{\epetra}{{\specialword{Epetra}}\xspace} -\newcommand{\tpetra}{{\specialword{Tpetra}}\xspace} \newcommand{\aspect}{\specialword{Aspect}\xspace} \newcommand{\petsc}{\specialword{PETSc}\xspace} \newcommand{\snes}{{\specialword{SNES}}\xspace} @@ -55,6 +53,8 @@ \newcommand{\petscsf}{{\specialword{SF}}\xspace} \newcommand{\cmake}{{\specialword{CMake}}\xspace} \newcommand{\candi}{{\specialword{candi}}\xspace} +\newcommand{\MPI}{{\specialword{MPI}}\xspace} +\newcommand{\MPIx}{{\specialword{MPI+X}}\xspace} \newcommand{\sundials}{{\specialword{SUNDIALS}}\xspace} \newcommand{\kinsol}{{\specialword{KINSOL}}\xspace} \newcommand{\ida}{{\specialword{IDA}}\xspace} @@ -62,6 +62,12 @@ \newcommand{\boost}{{\specialword{Boost}}\xspace} \newcommand{\kokkos}{{\specialword{Kokkos}}\xspace} +%Trilinos Packages +\newcommand{\epetra}{{\specialword{Epetra}}\xspace} +\newcommand{\petra}{{\specialword{Petra}}\xspace} +\newcommand{\teuchos}{{\specialword{Teuchos}}\xspace} +\newcommand{\tpetra}{{\specialword{Tpetra}}\xspace} + \usetikzlibrary{shapes.misc} \tikzset{cross/.style={cross out, draw=black, minimum size=2*(#1-\pgflinewidth), inner sep=0pt, outer sep=0pt}, @@ -312,9 +318,33 @@ can be found %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \subsection{Interface to the \trilinos \tpetra stack}\label{sec:tpetra} +As a software project, \trilinos{} is designed as a stack of semi-independent +packages building upon each other and working together. +As a foundation, \teuchos{} offers a set of basic tools, +including parameter handling through XML files or command line interfaces +and the reference counted pointer \texttt{RCP} which predates +the smart pointer types introduced in \texttt{C++11}. +The second layer in the stack is a package providing distributed linear algebra +classes for vectors and (sparse) matrices based on the \petra{} +object model. The third layer is a set of interconnected packages +providing preconditioners, various types of solvers +as well as more advanced techniques like automatic differentiation, +time integration and discretization. + +For now, there are two choices for the second layer +with \epetra{} providing \MPI{} only parallelism +and the newer \tpetra{} (templated Petra) providing additional shared memory +parallelism and GPU capabilities through \kokkos{}, referred to as \MPIx. +Since the interface of \tpetra{} was overhauled and modernized +many of the packages in the third layer now have two generations as well. +Therefore, the \MPI-only set of packages is also referred to as the +\epetra{} stack and the \MPIx{} packages form the \tpetra{} stack. +As a consequence of the different interfaces, +a decision was made in the \trilinos{} project to deprecate the \epetra{} stack +and only provide basic maintenance until a full +removal from their repository in the course of 2025. + \begin{itemize} - \item What is a \textit{stack}? [Thiele] - \item The \epetra stack is deprecated [Thiele] \item Short overview capabilities of \epetra (MPI parallel, fixed types) [Thiele] \item Short overview capabilities of \tpetra (MPI+X via Kokkos, auto diff types, Templated petra) [Thiele] \item Current state of the interface (Tpertra based linear algebra, direct solver from Amesos2, preconditioners from Ifpack2) [Thiele \& Kinnewig]