From: Paul A. Patience Date: Fri, 17 May 2024 12:32:27 +0000 (-0400) Subject: Apply prmindent to PRM files X-Git-Tag: v9.6.0-rc1~88^2 X-Git-Url: https://gitweb.dealii.org/cgi-bin/gitweb.cgi?a=commitdiff_plain;h=refs%2Fpull%2F17038%2Fhead;p=dealii.git Apply prmindent to PRM files The command was: find . -path ./tests/parameter_handler -prune \ -o -name '*.prm' -execdir prmindent -i '{}' \; In other words, PRM files in tests/parameter_handler were skipped, since some were carefully crafted to test ParameterHandler. --- diff --git a/examples/step-28/project.prm b/examples/step-28/project.prm index aaf9c3db5b..7e9680419c 100644 --- a/examples/step-28/project.prm +++ b/examples/step-28/project.prm @@ -1,14 +1,18 @@ # Listing of Parameters # --------------------- # Polynomial degree of the finite element to be used -set Finite element degree = 2 + +set Finite element degree = 2 # The number of energy different groups considered -set Number of energy groups = 2 + +set Number of energy groups = 2 # Inner power iterations are stopped when the change in k_eff falls below this # tolerance + set Power iteration tolerance = 1e-12 # Number of refinement cycles to be performed -set Refinement cycles = 5 + +set Refinement cycles = 5 diff --git a/examples/step-29/step-29.prm b/examples/step-29/step-29.prm index 2c49a9ef2c..a78039396c 100644 --- a/examples/step-29/step-29.prm +++ b/examples/step-29/step-29.prm @@ -3,22 +3,20 @@ subsection Mesh & geometry parameters # Distance of the focal point of the lens to the x-axis - set Focal distance = 0.3 + set Focal distance = 0.3 # Number of global mesh refinement steps applied to initial coarse grid set Number of refinements = 5 end - subsection Physical constants # Wave speed - set c = 1.5e5 + set c = 1.5e5 # Frequency set omega = 3.0e7 end - subsection Output parameters # Name of the output file (without extension) set Output filename = solution diff --git a/examples/step-32/step-32.prm b/examples/step-32/step-32.prm index 30cfaffa9c..f46f0b936c 100644 --- a/examples/step-32/step-32.prm +++ b/examples/step-32/step-32.prm @@ -1,35 +1,40 @@ # Listing of Parameters # --------------------- # The end time of the simulation in years. -set End time = 1e8 + +set End time = 1e8 # Whether graphical output is to be generated or not. You may not want to get # graphical output if the number of processors is large. -set Generate graphical output = true + +set Generate graphical output = true # The number of adaptive refinement steps performed after initial global # refinement. -set Initial adaptive refinement = 2 + +set Initial adaptive refinement = 2 # The number of global refinement steps performed on the initial coarse mesh, # before the problem is first solved there. -set Initial global refinement = 5 + +set Initial global refinement = 5 # The number of time steps between each generation of graphical output files. + set Time steps between graphical output = 50 # The number of time steps after which the mesh is to be adapted based on # computed error indicators. -set Time steps between mesh refinement = 10 +set Time steps between mesh refinement = 10 subsection Discretization # The polynomial degree to use for the velocity variables in the Stokes # system. - set Stokes velocity polynomial degree = 2 + set Stokes velocity polynomial degree = 2 # The polynomial degree to use for the temperature variable. - set Temperature polynomial degree = 2 + set Temperature polynomial degree = 2 # Whether to use a Stokes discretization that is locally conservative at the # expense of a larger number of degrees of freedom, or to go with a cheaper @@ -38,15 +43,14 @@ subsection Discretization set Use locally conservative discretization = true end - subsection Stabilization parameters # The exponent in the entropy viscosity stabilization. set alpha = 2 # The beta factor in the artificial viscosity stabilization. An appropriate # value for 2d is 0.052 and 0.078 for 3d. - set beta = 0.078 + set beta = 0.078 # The c_R factor in the entropy viscosity stabilization. - set c_R = 0.5 + set c_R = 0.5 end diff --git a/examples/step-33/input.prm b/examples/step-33/input.prm index b9e2e7346e..2f0232e08a 100644 --- a/examples/step-33/input.prm +++ b/examples/step-33/input.prm @@ -1,16 +1,19 @@ # Listing of Parameters # --------------------- -# The input grid +# The input grid + set mesh = slide.inp # Stabilization parameter + set diffusion power = 2.0 # -------------------------------------------------- # Boundary conditions # We may specify boundary conditions for up to MAX_BD boundaries. # Your .inp file should have these boundaries designated. + subsection boundary_1 set no penetration = true # reflective boundary condition end @@ -46,23 +49,25 @@ end # -------------------------------------------------- # Time stepping control + subsection time stepping - set final time = 10.0 # simulation end time - set time step = 0.02 # simulation time step + set final time = 10.0 # simulation end time + set time step = 0.02 # simulation time step set theta scheme value = 0.5 end subsection linear solver - set output = quiet - set method = gmres - set ilut fill = 1.5 - set ilut drop tolerance = 1e-6 + set output = quiet + set method = gmres + set ilut fill = 1.5 + set ilut drop tolerance = 1e-6 set ilut absolute tolerance = 1e-6 set ilut relative tolerance = 1.0 end # -------------------------------------------------- # Output frequency and kind + subsection output set step = 0.01 set schlieren plot = true @@ -70,15 +75,17 @@ end # -------------------------------------------------- # Refinement control + subsection refinement - set refinement = true # none only other option - set shock value = 1.5 + set refinement = true # none only other option + set shock value = 1.5 set shock levels = 1 # how many levels of refinement to allow end # -------------------------------------------------- # Flux parameters + subsection flux - set stab = constant - #set stab value = 1.0 + set stab = constant + #set stab value = 1.0 end diff --git a/examples/step-34/parameters.prm b/examples/step-34/parameters.prm index 59c39d46c6..4fc0df2978 100644 --- a/examples/step-34/parameters.prm +++ b/examples/step-34/parameters.prm @@ -1,29 +1,28 @@ # Listing of Parameters # --------------------- + set Extend solution on the -2,2 box = true set External refinement = 5 set Number of cycles = 4 set Run 2d simulation = true set Run 3d simulation = true - subsection Exact solution 2d # Any constant used inside the function which is not a variable name. - set Function constants = + set Function constants = # Separate vector valued expressions by ';' as ',' is used internally by the # function parser. - set Function expression = x+y # default: 0 + set Function expression = x+y # default: 0 # The name of the variables as they will be used in the function, separated # by ','. - set Variable names = x,y,t + set Variable names = x,y,t end - subsection Exact solution 3d # Any constant used inside the function which is not a variable name. - set Function constants = + set Function constants = # Separate vector valued expressions by ';' as ',' is used internally by the # function parser. @@ -31,17 +30,15 @@ subsection Exact solution 3d # The name of the variables as they will be used in the function, separated # by ','. - set Variable names = x,y,z,t + set Variable names = x,y,z,t end - subsection Quadrature rules set Quadrature order = 4 set Quadrature type = gauss set Singular quadrature order = 5 end - subsection Solver set Log frequency = 1 set Log history = false @@ -50,24 +47,22 @@ subsection Solver set Tolerance = 1.e-10 end - subsection Wind function 2d # Any constant used inside the function which is not a variable name. - set Function constants = + set Function constants = # Separate vector valued expressions by ';' as ',' is used internally by the # function parser. - set Function expression = 1; 1 # default: 0; 0 + set Function expression = 1; 1 # default: 0; 0 # The name of the variables as they will be used in the function, separated # by ','. - set Variable names = x,y,t + set Variable names = x,y,t end - subsection Wind function 3d # Any constant used inside the function which is not a variable name. - set Function constants = + set Function constants = # Separate vector valued expressions by ';' as ',' is used internally by the # function parser. @@ -75,5 +70,5 @@ subsection Wind function 3d # The name of the variables as they will be used in the function, separated # by ','. - set Variable names = x,y,z,t + set Variable names = x,y,z,t end diff --git a/examples/step-35/parameter-file.prm b/examples/step-35/parameter-file.prm index 81a946e3c3..fe83c04211 100644 --- a/examples/step-35/parameter-file.prm +++ b/examples/step-35/parameter-file.prm @@ -1,5 +1,6 @@ # First a global definition # the type of method we want to use + set Method_Form = rotational subsection Physical data @@ -20,23 +21,25 @@ subsection Space discretization # In this subsection we declare the data that is relevant to the space discretization # we set the number of global refines the triangulation must have # and the degree k of the pair Q_(k+1)--Q_k of velocity--pressure finite element spaces - set n_of_refines = 3 + set n_of_refines = 3 set pressure_fe_degree = 1 end subsection Data solve velocity # In this section we declare the parameters that are going to control the solution process # for the velocity. - set max_iterations = 1000 # maximal number of iterations that GMRES must make - set eps = 1e-8 # stopping criterion - set Krylov_size = 30 # size of the Krylov subspace to be used in GMRES - set off_diagonals = 70 # number of off diagonals that ILU must compute + set max_iterations = 1000 # maximal number of iterations that GMRES must make + set eps = 1e-8 # stopping criterion + set Krylov_size = 30 # size of the Krylov subspace to be used in GMRES + set off_diagonals = 70 # number of off diagonals that ILU must compute set diag_strength = 0.1 # diagonal strengthening value - set update_prec = 10 # this number indicates how often the preconditioner must be updated + set update_prec = 10 # this number indicates how often the preconditioner must be updated end #The output frequency + set output_interval = 50 #Finally we set the verbosity level + set verbose = false diff --git a/examples/step-36/step-36.prm b/examples/step-36/step-36.prm index 9280d729eb..b43c6f6fe6 100644 --- a/examples/step-36/step-36.prm +++ b/examples/step-36/step-36.prm @@ -2,10 +2,13 @@ # --------------------- # The number of times the 1-cell coarse mesh should be refined globally for # our computations. -set Global mesh refinement steps = 5 + +set Global mesh refinement steps = 5 # The number of eigenvalues/eigenfunctions to be computed. + set Number of eigenvalues/eigenfunctions = 5 # A functional description of the potential. -set Potential = 0 + +set Potential = 0 diff --git a/examples/step-42/p2_adaptive.prm b/examples/step-42/p2_adaptive.prm index 3c06265efd..ca5c012b3e 100644 --- a/examples/step-42/p2_adaptive.prm +++ b/examples/step-42/p2_adaptive.prm @@ -2,24 +2,30 @@ # --------------------- # polynomial degree of the FE_Q finite element space, typically 1 or 2 -set polynomial degree = 2 + +set polynomial degree = 2 # number of initial global refinements before the first computation + set number of initial refinements = 2 # number of adaptive cycles to run -set number of cycles = 11 + +set number of cycles = 11 # refinement strategy for each cycle: # global: one global refinement # percentage: fixed percentage gets refined using kelly # fix dofs: tries to achieve 2^initial_refinement*300 dofs after cycle 1 (only # use 2 cycles!). Changes the coarse mesh! -set refinement strategy = percentage + +set refinement strategy = percentage # obstacle file to read, leave empty to use a sphere or 'obstacle_file.pbm' -set obstacle filename = + +set obstacle filename = # directory to put output files (graphical output and benchmark statistics, # leave empty to put into current directory -set output directory = p2adaptive + +set output directory = p2adaptive diff --git a/examples/step-44/parameters.prm b/examples/step-44/parameters.prm index 5143f467df..c4bfea4324 100644 --- a/examples/step-44/parameters.prm +++ b/examples/step-44/parameters.prm @@ -1,74 +1,70 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 2 # Gauss quadrature order - set Quadrature order = 3 + set Quadrature order = 3 end - subsection Geometry # Global refinement level - set Global refinement = 2 + set Global refinement = 2 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver iterations (multiples of the system matrix size) # In 2-d, this value is best set at 2. In 3-d, a value of 1 work fine. set Max iteration multiplier = 2 # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 - + set Residual = 1e-6 + # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur # complement set Use static condensation = false # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 + set Tolerance force = 1.0e-9 end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.1 diff --git a/examples/step-50/amg_2d.prm b/examples/step-50/amg_2d.prm index 6343a8eaee..ceb25daacf 100644 --- a/examples/step-50/amg_2d.prm +++ b/examples/step-50/amg_2d.prm @@ -1,19 +1,25 @@ # Listing of Parameters # --------------------- # The problem dimension. -set dim = 2 + +set dim = 2 # Number of adaptive refinement steps. -set n_steps = 16 + +set n_steps = 16 # Output graphical results. -set output = true + +set output = true # Dampen factor for the smoother. + set smoother dampen = 1.0 # Number of smoother steps. -set smoother steps = 1 + +set smoother steps = 1 # Switch between GMG and AMG. -set solver = AMG + +set solver = AMG diff --git a/examples/step-50/amg_3d.prm b/examples/step-50/amg_3d.prm index 9131f07641..b178323ae7 100644 --- a/examples/step-50/amg_3d.prm +++ b/examples/step-50/amg_3d.prm @@ -1,19 +1,25 @@ # Listing of Parameters # --------------------- # The problem dimension. -set dim = 3 + +set dim = 3 # Number of adaptive refinement steps. -set n_steps = 12 + +set n_steps = 12 # Output graphical results. -set output = true + +set output = true # Dampen factor for the smoother. + set smoother dampen = 1.0 # Number of smoother steps. -set smoother steps = 1 + +set smoother steps = 1 # Switch between GMG and AMG. -set solver = AMG + +set solver = AMG diff --git a/examples/step-50/gmg_mb_2d.prm b/examples/step-50/gmg_mb_2d.prm index 59b264d54c..7cf2788efd 100644 --- a/examples/step-50/gmg_mb_2d.prm +++ b/examples/step-50/gmg_mb_2d.prm @@ -1,19 +1,25 @@ # Listing of Parameters # --------------------- # The problem dimension. -set dim = 2 + +set dim = 2 # Number of adaptive refinement steps. -set n_steps = 16 + +set n_steps = 16 # Output graphical results. -set output = true + +set output = true # Dampen factor for the smoother. + set smoother dampen = 1.0 # Number of smoother steps. -set smoother steps = 1 + +set smoother steps = 1 # Switch between GMG and AMG. -set solver = MB + +set solver = MB diff --git a/examples/step-50/gmg_mb_3d.prm b/examples/step-50/gmg_mb_3d.prm index a9d4f86db8..0a22c0af7b 100644 --- a/examples/step-50/gmg_mb_3d.prm +++ b/examples/step-50/gmg_mb_3d.prm @@ -1,19 +1,25 @@ # Listing of Parameters # --------------------- # The problem dimension. -set dim = 3 + +set dim = 3 # Number of adaptive refinement steps. -set n_steps = 12 + +set n_steps = 12 # Output graphical results. -set output = true + +set output = true # Dampen factor for the smoother. + set smoother dampen = 1.0 # Number of smoother steps. -set smoother steps = 1 + +set smoother steps = 1 # Switch between GMG and AMG. -set solver = MB + +set solver = MB diff --git a/examples/step-50/gmg_mf_2d.prm b/examples/step-50/gmg_mf_2d.prm index e4a3e20aad..d148199416 100644 --- a/examples/step-50/gmg_mf_2d.prm +++ b/examples/step-50/gmg_mf_2d.prm @@ -1,19 +1,25 @@ # Listing of Parameters # --------------------- # The problem dimension. -set dim = 2 + +set dim = 2 # Number of adaptive refinement steps. -set n_steps = 16 + +set n_steps = 16 # Output graphical results. -set output = true + +set output = true # Dampen factor for the smoother. + set smoother dampen = 1.0 # Number of smoother steps. -set smoother steps = 1 + +set smoother steps = 1 # Switch between GMG and AMG. -set solver = MF + +set solver = MF diff --git a/examples/step-50/gmg_mf_3d.prm b/examples/step-50/gmg_mf_3d.prm index d0d1a35b1d..2c893f90e2 100644 --- a/examples/step-50/gmg_mf_3d.prm +++ b/examples/step-50/gmg_mf_3d.prm @@ -1,19 +1,25 @@ # Listing of Parameters # --------------------- # The problem dimension. -set dim = 3 + +set dim = 3 # Number of adaptive refinement steps. -set n_steps = 12 + +set n_steps = 12 # Output graphical results. -set output = true + +set output = true # Dampen factor for the smoother. + set smoother dampen = 1.0 # Number of smoother steps. -set smoother steps = 1 + +set smoother steps = 1 # Switch between GMG and AMG. -set solver = MF + +set solver = MF diff --git a/examples/step-63/block_jacobi.prm b/examples/step-63/block_jacobi.prm index bc71ffc755..1a2442f311 100644 --- a/examples/step-63/block_jacobi.prm +++ b/examples/step-63/block_jacobi.prm @@ -1,20 +1,27 @@ # Diffusion parameter -set Epsilon = 0.005 + +set Epsilon = 0.005 # Finite Element degree -set Fe degree = 1 + +set Fe degree = 1 # Select smoother: SOR|Jacobi|block SOR|block Jacobi -set Smoother type = block Jacobi + +set Smoother type = block Jacobi # Select DoF renumbering: none|downstream|upstream|random -set DoF renumbering = downstream + +set DoF renumbering = downstream # Number of smoothing steps -set Smoothing steps = 3 + +set Smoothing steps = 3 # Enable streamline diffusion stabilization: true|false + set With streamline diffusion = true # Generate graphical output: true|false -set Output = true + +set Output = true diff --git a/examples/step-63/block_sor.prm b/examples/step-63/block_sor.prm index 6b03124400..edfd512bf5 100644 --- a/examples/step-63/block_sor.prm +++ b/examples/step-63/block_sor.prm @@ -1,20 +1,27 @@ # Diffusion parameter -set Epsilon = 0.005 + +set Epsilon = 0.005 # Finite Element degree -set Fe degree = 1 + +set Fe degree = 1 # Select smoother: SOR|Jacobi|block SOR|block Jacobi -set Smoother type = block SOR + +set Smoother type = block SOR # Select DoF renumbering: none|downstream|upstream|random -set DoF renumbering = downstream + +set DoF renumbering = downstream # Number of smoothing steps -set Smoothing steps = 1 + +set Smoothing steps = 1 # Enable streamline diffusion stabilization: true|false + set With streamline diffusion = true # Generate graphical output: true|false -set Output = true + +set Output = true diff --git a/examples/step-63/jacobi.prm b/examples/step-63/jacobi.prm index 821b1320e5..ee2f79f727 100644 --- a/examples/step-63/jacobi.prm +++ b/examples/step-63/jacobi.prm @@ -1,20 +1,27 @@ # Diffusion parameter -set Epsilon = 0.005 + +set Epsilon = 0.005 # Finite Element degree -set Fe degree = 1 + +set Fe degree = 1 # Select smoother: SOR|Jacobi|block SOR|block Jacobi -set Smoother type = Jacobi + +set Smoother type = Jacobi # Select DoF renumbering: none|downstream|upstream|random -set DoF renumbering = downstream + +set DoF renumbering = downstream # Number of smoothing steps -set Smoothing steps = 6 + +set Smoothing steps = 6 # Enable streamline diffusion stabilization: true|false + set With streamline diffusion = true # Generate graphical output: true|false -set Output = true + +set Output = true diff --git a/examples/step-63/sor.prm b/examples/step-63/sor.prm index c465caea22..cd965c04fc 100644 --- a/examples/step-63/sor.prm +++ b/examples/step-63/sor.prm @@ -1,20 +1,27 @@ # Diffusion parameter -set Epsilon = 0.005 + +set Epsilon = 0.005 # Finite Element degree -set Fe degree = 1 + +set Fe degree = 1 # Select smoother: SOR|Jacobi|block SOR|block Jacobi -set Smoother type = SOR + +set Smoother type = SOR # Select DoF renumbering: none|downstream|upstream|random -set DoF renumbering = downstream + +set DoF renumbering = downstream # Number of smoothing steps -set Smoothing steps = 3 + +set Smoothing steps = 3 # Enable streamline diffusion stabilization: true|false + set With streamline diffusion = true # Generate graphical output: true|false -set Output = true + +set Output = true diff --git a/examples/step-68/parameters.prm b/examples/step-68/parameters.prm index b7f9d6340d..faa9e4a72a 100644 --- a/examples/step-68/parameters.prm +++ b/examples/step-68/parameters.prm @@ -1,21 +1,22 @@ # Listing of Parameters # --------------------- + subsection Particle Tracking Problem # End time of the simulation - set Final time = 4 + set Final time = 4 # Refinement level of the fluid domain - set Fluid refinement = 4 - set Output directory = ./ + set Fluid refinement = 4 + set Output directory = ./ # Iteration frequency at which output results are written - set Output interval = 10 + set Output interval = 10 # Refinement of the volumetric mesh used to insert the particles set Particle insertion refinement = 3 # Iteration frequency at which the mesh is load balanced - set Repartition interval = 5 - set Time step = 0.002 - set Velocity degree = 1 + set Repartition interval = 5 + set Time step = 0.002 + set Velocity degree = 1 end diff --git a/examples/step-69/step-69.prm b/examples/step-69/step-69.prm index b2e46ead92..fd99857f6a 100644 --- a/examples/step-69/step-69.prm +++ b/examples/step-69/step-69.prm @@ -1,29 +1,29 @@ # Listing of Parameters # --------------------- + subsection A - MainLoop # Write out solution in a background thread performing IO set asynchronous writeback = true # Base name for all output files - set basename = test + set basename = test # Final time - set final time = 4 + set final time = 4 # Time interval for output - set output granularity = 0.02 + set output granularity = 0.02 # Resume an interrupted computation. - set resume = false + set resume = false end - subsection B - Discretization # Height of computational domain - set height = 2 + set height = 2 # Length of computational domain - set length = 4 + set length = 4 # Diameter of immersed disk set object diameter = 0.5 @@ -32,32 +32,28 @@ subsection B - Discretization set object position = 0.6 # Number of refinement steps of the geometry - set refinement = 5 + set refinement = 5 end - subsection C - OfflineData end - subsection D - InitialValues # Initial 1d state (rho, u, p) of the uniform flow field - set initial 1d state = 1.4, 3, 1 + set initial 1d state = 1.4, 3, 1 # Initial direction of the uniform flow field set initial direction = 1, 0 end - subsection E - TimeStepping # Relative CFL constant used for update set cfl update = 0.8 end - subsection F - SchlierenPostprocessor # Beta factor used in Schlieren-type postprocessor - set schlieren beta = 10 + set schlieren beta = 10 # Use the corresponding component of the state vector for the schlieren # plot diff --git a/examples/step-70/parameters.prm b/examples/step-70/parameters.prm index 376f76ae3a..672dac0d42 100644 --- a/examples/step-70/parameters.prm +++ b/examples/step-70/parameters.prm @@ -1,5 +1,6 @@ # This is a parameter file that can be used to reproduce the two dimensional # results of the tutorial program step-70. + subsection Stokes Immersed Problem set Final time = 1 set Homogeneous Dirichlet boundary ids = 0 @@ -24,7 +25,7 @@ subsection Stokes Immersed Problem set Solid grid generator = hyper_rectangle set Solid grid generator arguments = -.5, -.1: .5, .1: false end - + subsection Refinement and remeshing set Maximum number of cells = 20000 set Refinement coarsening fraction = 0.3 @@ -35,7 +36,6 @@ subsection Stokes Immersed Problem set Refinement strategy = fixed_fraction end - subsection Right hand side set Function constants = set Function expression = 0; 0; 0 diff --git a/examples/step-70/parameters_23.prm b/examples/step-70/parameters_23.prm index fbba03db2b..86863571ea 100644 --- a/examples/step-70/parameters_23.prm +++ b/examples/step-70/parameters_23.prm @@ -2,11 +2,12 @@ # results of the tutorial program step-70. The name of the parameter file # indicates that the program will expect to work with a fluid grid in three # dimensions, and a solid grid representing a surface embedded in three -# dimensions. +# dimensions. # # With this parameter file, we generate a hyper rectangular grid slightly # larger w.r.t. to a impeller grid that was generated from the CAD files # downloaded from https://grabcad.com/library/lungstors-blower-1 + subsection Stokes Immersed Problem set Final time = 1 set Homogeneous Dirichlet boundary ids = 0 @@ -26,10 +27,10 @@ subsection Stokes Immersed Problem set Variable names = x,y,z,t end subsection Grid generation - set Fluid grid generator = hyper_rectangle - set Fluid grid generator arguments = -50,-50, -10: 50, 50, 40: false - set Solid grid generator = impeller.vtk - set Solid grid generator arguments = + set Fluid grid generator = hyper_rectangle + set Fluid grid generator arguments = -50,-50, -10: 50, 50, 40: false + set Solid grid generator = impeller.vtk + set Solid grid generator arguments = set Particle grid generator = hyper_ball set Particle grid generator arguments = 30, 30, 20: 10: false end diff --git a/examples/step-72/parameters.prm b/examples/step-72/parameters.prm index db95988830..f37c521e1a 100644 --- a/examples/step-72/parameters.prm +++ b/examples/step-72/parameters.prm @@ -1,17 +1,16 @@ # Listing of Parameters # --------------------- + subsection Minimal Surface Problem # Selection for the formulation and corresponding AD framework to be used. # formulation = 0 : Unassisted implementation (full hand linearization) # formulation = 1 : Automated linearization of the finite element - # residual + # residual # formulation = 2 : Automated computation of finite element - # residual and linearization using a + # residual and linearization using a # variational formulation set Formulation = 0 # The maximum acceptable tolerance for the linear system residual - set Tolerance = 0.01 + set Tolerance = 0.01 end - - diff --git a/examples/step-81/parameters.prm b/examples/step-81/parameters.prm index a3dd90cf15..fe629639b3 100644 --- a/examples/step-81/parameters.prm +++ b/examples/step-81/parameters.prm @@ -1,53 +1,52 @@ # Listing of Parameters # --------------------- + subsection Maxwell # use absorbing boundary conditions? set absorbing boundary condition = true # order of the finite element space - set fe order = 0 + set fe order = 0 # order of the quadrature - set quadrature order = 1 + set quadrature order = 1 # number of refinements of the geometry - set refinements = 8 + set refinements = 8 # scale of the hypercube geometry - set scaling = 20 + set scaling = 20 end - subsection Parameters # orientation of the dipole set dipole orientation = 0, 1 # position of the dipole - set dipole position = 0, 0.8 + set dipole position = 0, 0.8 # radius of the dipole - set dipole radius = 0.3 + set dipole radius = 0.3 # strength of the dipole - set dipole strength = 1, 0 + set dipole strength = 1, 0 # relative permittivity of material 1 set material 1 epsilon = 1, 0; 0, 0| 0, 0; 1, 0 # inverse of relative permeability of material 1 - set material 1 mu_inv = 1, 0 + set material 1 mu_inv = 1, 0 # relative permittivity of material 2 set material 2 epsilon = 1, 0; 0, 0| 0, 0; 1, 0 # inverse of relative permeability of material 2 - set material 2 mu_inv = 1, 0 + set material 2 mu_inv = 1, 0 # surface conductivity between material 1 and material 2 - set sigma = 0.001, 0.2; 0, 0| 0, 0; 0.001, 0.2 + set sigma = 0.001, 0.2; 0, 0| 0, 0; 0.001, 0.2 end - subsection PerfectlyMatchedLayer # inner radius of the PML shell set inner radius = 12 @@ -56,7 +55,5 @@ subsection PerfectlyMatchedLayer set outer radius = 20 # strength of the PML - set strength = 8 + set strength = 8 end - - diff --git a/tests/adolc/prm/parameters-step-44.prm b/tests/adolc/prm/parameters-step-44.prm index de1fa049f6..233a8cca2a 100644 --- a/tests/adolc/prm/parameters-step-44.prm +++ b/tests/adolc/prm/parameters-step-44.prm @@ -1,29 +1,28 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 1 # Gauss quadrature order - set Quadrature order = 2 + set Quadrature order = 2 end - subsection Geometry # Global refinement level - set Global refinement = 1 + set Global refinement = 1 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 + set Residual = 1e-6 # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur @@ -31,40 +30,37 @@ subsection Linear solver set Use static condensation = true # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 + set Tolerance force = 1.0e-9 end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.1 diff --git a/tests/non_matching/step-70.in.prm b/tests/non_matching/step-70.in.prm index bd6c348996..e13f17aecf 100644 --- a/tests/non_matching/step-70.in.prm +++ b/tests/non_matching/step-70.in.prm @@ -1,5 +1,6 @@ # This is a parameter file that can be used to reproduce the two dimensional # results of the tutorial program step-70. + subsection Stokes Immersed Problem set Final time = 0.01 set Homogeneous Dirichlet boundary ids = 0 @@ -24,7 +25,7 @@ subsection Stokes Immersed Problem set Solid grid generator = hyper_rectangle set Solid grid generator arguments = -.5, -.1: .5, .1: false end - + subsection Refinement and remeshing set Maximum number of cells = 20000 set Refinement coarsening fraction = 0.3 @@ -35,7 +36,6 @@ subsection Stokes Immersed Problem set Refinement strategy = fixed_fraction end - subsection Right hand side set Function constants = set Function expression = 0; 0; 0 diff --git a/tests/optimization/prm/parameters-step-44-with_linesearch.prm b/tests/optimization/prm/parameters-step-44-with_linesearch.prm index 79a29e9f44..f88fc836e2 100644 --- a/tests/optimization/prm/parameters-step-44-with_linesearch.prm +++ b/tests/optimization/prm/parameters-step-44-with_linesearch.prm @@ -1,33 +1,32 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 1 # Gauss quadrature order - set Quadrature order = 2 + set Quadrature order = 2 end - subsection Geometry # Global refinement level - set Global refinement = 2 + set Global refinement = 2 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver iterations (multiples of the system matrix size) # In 2-d, this value is best set at 2. In 3-d, a value of 1 work fine. set Max iteration multiplier = 2 # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 + set Residual = 1e-6 # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur @@ -35,46 +34,43 @@ subsection Linear solver set Use static condensation = true # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed - set Max iterations Newton-Raphson = 10 + set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 - + set Tolerance force = 1.0e-9 + # Use line-search minimization algorithm - set Use line search = true - + set Use line search = true + # Use an approximation for the gradient during line search set Use line search approximate gradient = false end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.5 diff --git a/tests/optimization/prm/parameters-step-44-with_linesearch_ptrb.prm b/tests/optimization/prm/parameters-step-44-with_linesearch_ptrb.prm index 042f1a8722..6a925f8225 100644 --- a/tests/optimization/prm/parameters-step-44-with_linesearch_ptrb.prm +++ b/tests/optimization/prm/parameters-step-44-with_linesearch_ptrb.prm @@ -1,33 +1,32 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 1 # Gauss quadrature order - set Quadrature order = 2 + set Quadrature order = 2 end - subsection Geometry # Global refinement level - set Global refinement = 2 + set Global refinement = 2 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver iterations (multiples of the system matrix size) # In 2-d, this value is best set at 2. In 3-d, a value of 1 work fine. set Max iteration multiplier = 2 # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 + set Residual = 1e-6 # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur @@ -35,46 +34,43 @@ subsection Linear solver set Use static condensation = true # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed - set Max iterations Newton-Raphson = 10 + set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 - + set Tolerance force = 1.0e-9 + # Use line-search minimization algorithm - set Use line search = true - + set Use line search = true + # Use an approximation for the gradient during line search set Use line search approximate gradient = true end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.5 diff --git a/tests/optimization/prm/parameters-step-44-without_linesearch.prm b/tests/optimization/prm/parameters-step-44-without_linesearch.prm index 72f908c3c0..98597f3169 100644 --- a/tests/optimization/prm/parameters-step-44-without_linesearch.prm +++ b/tests/optimization/prm/parameters-step-44-without_linesearch.prm @@ -1,33 +1,32 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 1 # Gauss quadrature order - set Quadrature order = 2 + set Quadrature order = 2 end - subsection Geometry # Global refinement level - set Global refinement = 2 + set Global refinement = 2 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver iterations (multiples of the system matrix size) # In 2-d, this value is best set at 2. In 3-d, a value of 1 work fine. set Max iteration multiplier = 2 # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 + set Residual = 1e-6 # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur @@ -35,46 +34,43 @@ subsection Linear solver set Use static condensation = true # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 - + set Tolerance force = 1.0e-9 + # Use line-search minimization algorithm - set Use line search = false - + set Use line search = false + # Use an approximation for the gradient during line search set Use line search approximate gradient = false end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.5 diff --git a/tests/petsc/petsc_snes_00_in.prm b/tests/petsc/petsc_snes_00_in.prm index 100e7479d4..be39163915 100644 --- a/tests/petsc/petsc_snes_00_in.prm +++ b/tests/petsc/petsc_snes_00_in.prm @@ -1,8 +1,8 @@ subsection Running parameters - set solver type = newtonls - set absolute error tolerance = 1.e-9 - set relative error tolerance = 2.e-9 - set step tolerance = 3.e-9 - set maximum iterations = 23 + set solver type = newtonls + set absolute error tolerance = 1.e-9 + set relative error tolerance = 2.e-9 + set step tolerance = 3.e-9 + set maximum iterations = 23 set maximum function evaluations = 77 end diff --git a/tests/petsc/petsc_ts_00_in.prm b/tests/petsc/petsc_ts_00_in.prm index 5127d37cc4..0c4ccb5bd4 100644 --- a/tests/petsc/petsc_ts_00_in.prm +++ b/tests/petsc/petsc_ts_00_in.prm @@ -1,9 +1,10 @@ subsection Running parameters set initial time = 1.0 set final time = 6.0 - set solver type = bdf + set solver type = bdf set initial step size = 0.0625 end + subsection Error control set minimum step size = 1e-7 set maximum step size = 1e+7 diff --git a/tests/petsc/petsc_ts_03_in.prm b/tests/petsc/petsc_ts_03_in.prm index 157465a7f4..c709ffdcb1 100644 --- a/tests/petsc/petsc_ts_03_in.prm +++ b/tests/petsc/petsc_ts_03_in.prm @@ -1,11 +1,12 @@ subsection Running parameters set initial time = 0 set final time = 2.0 - set solver type = bdf + set solver type = bdf set initial step size = 0.2 end + subsection Error control set absolute error tolerance = 0.0001 - set minimum step size = 1e-7 - set maximum step size = 1e+7 + set minimum step size = 1e-7 + set maximum step size = 1e+7 end diff --git a/tests/physics/prm/parameters-step-44.prm b/tests/physics/prm/parameters-step-44.prm index d803fc8955..95dc4f8c12 100644 --- a/tests/physics/prm/parameters-step-44.prm +++ b/tests/physics/prm/parameters-step-44.prm @@ -1,33 +1,32 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 1 # Gauss quadrature order - set Quadrature order = 2 + set Quadrature order = 2 end - subsection Geometry # Global refinement level - set Global refinement = 2 + set Global refinement = 2 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver iterations (multiples of the system matrix size) # In 2-d, this value is best set at 2. In 3-d, a value of 1 work fine. set Max iteration multiplier = 2 # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 + set Residual = 1e-6 # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur @@ -35,40 +34,37 @@ subsection Linear solver set Use static condensation = true # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 + set Tolerance force = 1.0e-9 end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.1 diff --git a/tests/sacado/prm/parameters-step-44.prm b/tests/sacado/prm/parameters-step-44.prm index de1fa049f6..233a8cca2a 100644 --- a/tests/sacado/prm/parameters-step-44.prm +++ b/tests/sacado/prm/parameters-step-44.prm @@ -1,29 +1,28 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 1 # Gauss quadrature order - set Quadrature order = 2 + set Quadrature order = 2 end - subsection Geometry # Global refinement level - set Global refinement = 1 + set Global refinement = 1 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 + set Residual = 1e-6 # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur @@ -31,40 +30,37 @@ subsection Linear solver set Use static condensation = true # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 + set Tolerance force = 1.0e-9 end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.1 diff --git a/tests/sundials/arkode_01_in.prm b/tests/sundials/arkode_01_in.prm index d1da0f7335..775b3acbd4 100644 --- a/tests/sundials/arkode_01_in.prm +++ b/tests/sundials/arkode_01_in.prm @@ -1,10 +1,12 @@ set Final time = 6.28 set Initial time = 0 set Time interval between each output = 0.05 + subsection Error control set Absolute error tolerance = 0.000001 set Relative error tolerance = 0.000010 end + subsection Running parameters set Initial step size = 0.010000 set Maximum number of nonlinear iterations = 10 diff --git a/tests/sundials/arkode_03_in.prm b/tests/sundials/arkode_03_in.prm index a412b2b72f..d713985d62 100644 --- a/tests/sundials/arkode_03_in.prm +++ b/tests/sundials/arkode_03_in.prm @@ -1,12 +1,14 @@ set Final time = 10 set Initial time = 0 set Time interval between each output = 0.1 + subsection Error control # making this tolerance any lower prevents convergence in 5.4: # this is fixed in 6.2 set Absolute error tolerance = 5e-9 set Relative error tolerance = 5e-9 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true @@ -15,5 +17,5 @@ subsection Running parameters set Maximum order of ARK = 5 set Minimum step size = 1e-7 # A larger subspace, combined with looser tolerances, are required by 5.4 - set Anderson-acceleration subspace = 10 + set Anderson-acceleration subspace = 10 end diff --git a/tests/sundials/arkode_04_in.prm b/tests/sundials/arkode_04_in.prm index 06eda8bad9..c06ac35662 100644 --- a/tests/sundials/arkode_04_in.prm +++ b/tests/sundials/arkode_04_in.prm @@ -1,11 +1,13 @@ set Final time = 10. set Initial time = 0. set Time interval between each output = 0.1 + subsection Error control # This test is somewhat easier since we have a way to evaluate the Jacobian set Absolute error tolerance = 4e-9 set Relative error tolerance = 4e-9 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true diff --git a/tests/sundials/arkode_05_in.prm b/tests/sundials/arkode_05_in.prm index 55a91a0b7c..74a5e9cc1f 100644 --- a/tests/sundials/arkode_05_in.prm +++ b/tests/sundials/arkode_05_in.prm @@ -1,10 +1,12 @@ set Final time = 10. set Initial time = 0. set Time interval between each output = 0.1 + subsection Error control set Absolute error tolerance = 0.000001 set Relative error tolerance = 0.000010 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true diff --git a/tests/sundials/arkode_06_in.prm b/tests/sundials/arkode_06_in.prm index 55a91a0b7c..74a5e9cc1f 100644 --- a/tests/sundials/arkode_06_in.prm +++ b/tests/sundials/arkode_06_in.prm @@ -1,10 +1,12 @@ set Final time = 10. set Initial time = 0. set Time interval between each output = 0.1 + subsection Error control set Absolute error tolerance = 0.000001 set Relative error tolerance = 0.000010 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true diff --git a/tests/sundials/arkode_07_in.prm b/tests/sundials/arkode_07_in.prm index 55a91a0b7c..74a5e9cc1f 100644 --- a/tests/sundials/arkode_07_in.prm +++ b/tests/sundials/arkode_07_in.prm @@ -1,10 +1,12 @@ set Final time = 10. set Initial time = 0. set Time interval between each output = 0.1 + subsection Error control set Absolute error tolerance = 0.000001 set Relative error tolerance = 0.000010 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true diff --git a/tests/sundials/arkode_08_in.prm b/tests/sundials/arkode_08_in.prm index f7d62b16cd..4b0e723d09 100644 --- a/tests/sundials/arkode_08_in.prm +++ b/tests/sundials/arkode_08_in.prm @@ -1,10 +1,12 @@ set Final time = 1. set Initial time = 0. set Time interval between each output = 0.1 + subsection Error control set Absolute error tolerance = 0.000001 set Relative error tolerance = 0.000010 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true diff --git a/tests/sundials/arkode_09_in.prm b/tests/sundials/arkode_09_in.prm index 59d346a632..5219324005 100644 --- a/tests/sundials/arkode_09_in.prm +++ b/tests/sundials/arkode_09_in.prm @@ -1,10 +1,12 @@ set Final time = 6 set Initial time = 0 set Time interval between each output = 2 + subsection Error control set Absolute error tolerance = 0.001 set Relative error tolerance = 0.010 end + subsection Running parameters set Initial step size = 3 set Maximum number of nonlinear iterations = 10 diff --git a/tests/sundials/arkode_10_in.prm b/tests/sundials/arkode_10_in.prm index f7d62b16cd..4b0e723d09 100644 --- a/tests/sundials/arkode_10_in.prm +++ b/tests/sundials/arkode_10_in.prm @@ -1,10 +1,12 @@ set Final time = 1. set Initial time = 0. set Time interval between each output = 0.1 + subsection Error control set Absolute error tolerance = 0.000001 set Relative error tolerance = 0.000010 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true diff --git a/tests/sundials/arkode_11_in.prm b/tests/sundials/arkode_11_in.prm index f7d62b16cd..4b0e723d09 100644 --- a/tests/sundials/arkode_11_in.prm +++ b/tests/sundials/arkode_11_in.prm @@ -1,10 +1,12 @@ set Final time = 1. set Initial time = 0. set Time interval between each output = 0.1 + subsection Error control set Absolute error tolerance = 0.000001 set Relative error tolerance = 0.000010 end + subsection Running parameters set Implicit function is linear = true set Implicit function is time independent = true diff --git a/tests/sundials/arkode_repeated_solve_in.prm b/tests/sundials/arkode_repeated_solve_in.prm index 7116f78f15..5a739e9727 100644 --- a/tests/sundials/arkode_repeated_solve_in.prm +++ b/tests/sundials/arkode_repeated_solve_in.prm @@ -1,10 +1,12 @@ set Final time = 2.0 set Initial time = 0 set Time interval between each output = 0.1 + subsection Error control set Absolute error tolerance = 1e-8 set Relative error tolerance = 1e-8 end + subsection Running parameters set Initial step size = 1e-6 set Maximum number of nonlinear iterations = 10 diff --git a/tests/sundials/ida_01_in.prm b/tests/sundials/ida_01_in.prm index 7bcaf91852..847bba15c1 100644 --- a/tests/sundials/ida_01_in.prm +++ b/tests/sundials/ida_01_in.prm @@ -1,16 +1,19 @@ set Final time = 6.3 set Initial time = 0 set Time interval between each output = 0.2 + subsection Error control set Absolute error tolerance = 1e-10 set Ignore algebraic terms for error computations = true set Relative error tolerance = 1e-10 end + subsection Initial condition correction parameters set Correction type at initial time = none set Correction type after restart = none set Maximum number of nonlinear iterations = 10 end + subsection Running parameters set Initial step size = 1e-6 set Maximum number of nonlinear iterations = 10 diff --git a/tests/sundials/ida_03_in.prm b/tests/sundials/ida_03_in.prm index e6fa7952de..528e31e2c7 100644 --- a/tests/sundials/ida_03_in.prm +++ b/tests/sundials/ida_03_in.prm @@ -1,16 +1,19 @@ set Final time = 2 set Initial time = 0 set Time interval between each output = 0.2 + subsection Error control set Absolute error tolerance = 1e-10 set Ignore algebraic terms for error computations = true set Relative error tolerance = 1e-10 end + subsection Initial condition correction parameters set Correction type at initial time = none set Correction type after restart = none set Maximum number of nonlinear iterations = 10 end + subsection Running parameters set Initial step size = 1e-6 set Maximum number of nonlinear iterations = 10 diff --git a/tests/sundials/ida_04_in.prm b/tests/sundials/ida_04_in.prm index 957081de90..eeb60ca19f 100644 --- a/tests/sundials/ida_04_in.prm +++ b/tests/sundials/ida_04_in.prm @@ -1,16 +1,19 @@ set Final time = 2 set Initial time = 0 set Time interval between each output = 0.2 + subsection Error control set Absolute error tolerance = 1e-10 set Ignore algebraic terms for error computations = true set Relative error tolerance = 1e-10 end + subsection Initial condition correction parameters set Correction type at initial time = none set Correction type after restart = none set Maximum number of nonlinear iterations = 10 end + subsection Running parameters set Initial step size = 0.2 # start with a large time step set Maximum number of nonlinear iterations = 10 diff --git a/tests/sundials/kinsol_fixed_point.prm b/tests/sundials/kinsol_fixed_point.prm index a64b3cac28..6ef3d7466c 100644 --- a/tests/sundials/kinsol_fixed_point.prm +++ b/tests/sundials/kinsol_fixed_point.prm @@ -2,12 +2,15 @@ set Function norm stopping tolerance = 1e-10 set Maximum number of nonlinear iterations = 200 set Scaled step stopping tolerance = 1e-10 set Solution strategy = fixed_point + subsection Fixed point and Picard parameters set Anderson acceleration subspace size = 2 end + subsection Linesearch parameters set Maximum number of beta-condition failures = 0 end + subsection Newton parameters set Maximum allowable scaled length of the Newton step = 0.000000 set Maximum iterations without matrix setup = 0 diff --git a/tests/sundials/kinsol_linesearch.prm b/tests/sundials/kinsol_linesearch.prm index a37daf6c8c..ac437f3b34 100644 --- a/tests/sundials/kinsol_linesearch.prm +++ b/tests/sundials/kinsol_linesearch.prm @@ -2,12 +2,15 @@ set Function norm stopping tolerance = 0.000000 set Maximum number of nonlinear iterations = 200 set Scaled step stopping tolerance = 0.000000 set Solution strategy = linesearch + subsection Fixed point and Picard parameters set Anderson acceleration subspace size = 5 end + subsection Linesearch parameters set Maximum number of beta-condition failures = 0 end + subsection Newton parameters set Maximum allowable scaled length of the Newton step = 0.000000 set Maximum iterations without matrix setup = 0 diff --git a/tests/sundials/kinsol_newton.prm b/tests/sundials/kinsol_newton.prm index 3e5ce272a8..8376ab5b56 100644 --- a/tests/sundials/kinsol_newton.prm +++ b/tests/sundials/kinsol_newton.prm @@ -2,12 +2,15 @@ set Function norm stopping tolerance = 0.000000 set Maximum number of nonlinear iterations = 200 set Scaled step stopping tolerance = 0.000000 set Solution strategy = newton + subsection Fixed point and Picard parameters set Anderson acceleration subspace size = 5 end + subsection Linesearch parameters set Maximum number of beta-condition failures = 0 end + subsection Newton parameters set Maximum allowable scaled length of the Newton step = 0.000000 set Maximum iterations without matrix setup = 0 diff --git a/tests/sundials/kinsol_picard.prm b/tests/sundials/kinsol_picard.prm index f684cc3e2b..0b53efa4a1 100644 --- a/tests/sundials/kinsol_picard.prm +++ b/tests/sundials/kinsol_picard.prm @@ -2,12 +2,15 @@ set Function norm stopping tolerance = 1e-10 set Maximum number of nonlinear iterations = 200 set Scaled step stopping tolerance = 1e-10 set Solution strategy = picard + subsection Fixed point and Picard parameters set Anderson acceleration subspace size = 2 end + subsection Linesearch parameters set Maximum number of beta-condition failures = 0 end + subsection Newton parameters set Maximum allowable scaled length of the Newton step = 0.000000 set Maximum iterations without matrix setup = 0 diff --git a/tests/symengine/prm/parameters-step-44.prm b/tests/symengine/prm/parameters-step-44.prm index 5634653f3c..fa559e3be9 100644 --- a/tests/symengine/prm/parameters-step-44.prm +++ b/tests/symengine/prm/parameters-step-44.prm @@ -1,34 +1,33 @@ # Listing of Parameters # --------------------- + subsection Finite element system # Displacement system polynomial order set Polynomial degree = 1 # Gauss quadrature order - set Quadrature order = 2 + set Quadrature order = 2 end - subsection Geometry # Global refinement level # Low refinement level because symbolic computations are (apparently) rather slow at the moment... - set Global refinement = 1 + set Global refinement = 1 # Global grid scaling factor - set Grid scale = 1e-3 + set Grid scale = 1e-3 # Ratio of applied pressure to reference pressure set Pressure ratio p/p0 = 100 end - subsection Linear solver # Linear solver iterations (multiples of the system matrix size) # In 2-d, this value is best set at 2. In 3-d, a value of 1 work fine. set Max iteration multiplier = 2 # Linear solver residual (scaled by residual norm) - set Residual = 1e-6 + set Residual = 1e-6 # Use static condensation and solve a 1-block system, or solve # the full 3-block system using Linear Operators and the Schur @@ -36,40 +35,37 @@ subsection Linear solver set Use static condensation = true # Preconditioner type - set Preconditioner type = ssor + set Preconditioner type = ssor # Preconditioner relaxation value - set Preconditioner relaxation = 0.65 + set Preconditioner relaxation = 0.65 # Type of solver used to solve the linear system - set Solver type = CG + set Solver type = CG end - subsection Material properties # Poisson's ratio set Poisson's ratio = 0.4999 # Shear modulus - set Shear modulus = 80.194e6 + set Shear modulus = 80.194e6 end - subsection Nonlinear solver # Number of Newton-Raphson iterations allowed set Max iterations Newton-Raphson = 10 # Displacement error tolerance - set Tolerance displacement = 1.0e-6 + set Tolerance displacement = 1.0e-6 # Force residual tolerance - set Tolerance force = 1.0e-9 + set Tolerance force = 1.0e-9 end - subsection Time # End time - set End time = 1 + set End time = 1 # Time step size set Time step size = 0.1