From: Jean-Paul Pelteret Date: Thu, 20 Sep 2018 08:11:36 +0000 (+0200) Subject: Fix GridIn::read_abaqus() for codimension 1 case. X-Git-Tag: v9.1.0-rc1~698^2 X-Git-Url: https://gitweb.dealii.org/cgi-bin/gitweb.cgi?a=commitdiff_plain;h=refs%2Fpull%2F7217%2Fhead;p=dealii.git Fix GridIn::read_abaqus() for codimension 1 case. --- diff --git a/doc/news/changes/minor/20180920YuxiangWangJean-PaulPelteret b/doc/news/changes/minor/20180920YuxiangWangJean-PaulPelteret new file mode 100644 index 0000000000..e2028eeb00 --- /dev/null +++ b/doc/news/changes/minor/20180920YuxiangWangJean-PaulPelteret @@ -0,0 +1,4 @@ +Fixed: The GridIn::read_abaqus() function now correctly reads in grids designed +for the co-dimension 1 case (specifically with dim == 2 and spacedim == 3). +
+(Yuxiang Wang, Jean-Paul Pelteret, 2018/09/20) diff --git a/source/grid/grid_in.cc b/source/grid/grid_in.cc index fbc76f5745..a24174e4ac 100644 --- a/source/grid/grid_in.cc +++ b/source/grid/grid_in.cc @@ -916,7 +916,7 @@ GridIn::read_ucd(std::istream &in, namespace { - template + template class Abaqus_to_UCD { public: @@ -953,12 +953,18 @@ GridIn::read_abaqus(std::istream &in, const bool apply_all_indicators_to_manifolds) { Assert(tria != nullptr, ExcNoTriangulationSelected()); - Assert(dim == 2 || dim == 3, ExcNotImplemented()); + // This implementation has only been verified for: + // - 2d grids with codimension 0 + // - 3d grids with codimension 0 + // - 3d grids with codimension 1 + Assert((spacedim == 2 && dim == spacedim) || + (spacedim == 3 && (dim == spacedim || dim == spacedim - 1)), + ExcNotImplemented()); AssertThrow(in, ExcIO()); // Read in the Abaqus file into an intermediate object // that is to be passed along to the UCD reader - Abaqus_to_UCD abaqus_to_ucd; + Abaqus_to_UCD abaqus_to_ucd; abaqus_to_ucd.read_in_abaqus(in); std::stringstream in_ucd; @@ -3220,12 +3226,12 @@ GridIn::get_format_names() namespace { - template - Abaqus_to_UCD::Abaqus_to_UCD() + template + Abaqus_to_UCD::Abaqus_to_UCD() : tolerance(5e-16) // Used to offset Cubit tolerance error when outputting // value close to zero { - AssertThrow(dim == 2 || dim == 3, ExcNotImplemented()); + AssertThrow(spacedim == 2 || spacedim == 3, ExcNotImplemented()); } // Convert from a string to some other data type @@ -3256,9 +3262,9 @@ namespace return number; } - template + template void - Abaqus_to_UCD::read_in_abaqus(std::istream &input_stream) + Abaqus_to_UCD::read_in_abaqus(std::istream &input_stream) { // References: // http://www.egr.msu.edu/software/abaqus/Documentation/docs/v6.7/books/usb/default.htm?startat=pt01ch02.html @@ -3298,11 +3304,11 @@ namespace if (line[0] == '*') goto cont; - std::vector node(dim + 1); + std::vector node(spacedim + 1); std::istringstream iss(line); char comma; - for (unsigned int i = 0; i < dim + 1; ++i) + for (unsigned int i = 0; i < spacedim + 1; ++i) iss >> node[i] >> comma; node_list.push_back(node); @@ -3572,10 +3578,11 @@ namespace } } - template + template std::vector - Abaqus_to_UCD::get_global_node_numbers(const int face_cell_no, - const int face_cell_face_no) const + Abaqus_to_UCD::get_global_node_numbers( + const int face_cell_no, + const int face_cell_face_no) const { std::vector quad_node_list(GeometryInfo::vertices_per_face); @@ -3669,9 +3676,9 @@ namespace return quad_node_list; } - template + template void - Abaqus_to_UCD::write_out_avs_ucd(std::ostream &output) const + Abaqus_to_UCD::write_out_avs_ucd(std::ostream &output) const { // References: // http://www.dealii.org/developer/doxygen/deal.II/structGeometryInfo.html @@ -3725,7 +3732,7 @@ namespace // Node coordinates output.setf(std::ios::scientific, std::ios::floatfield); - for (unsigned int jj = 1; jj < dim + 1; ++jj) + for (unsigned int jj = 1; jj < spacedim + 1; ++jj) { // invoke tolerance -> set points close to zero equal to zero if (std::abs(node_list[ii][jj]) > tolerance) @@ -3733,7 +3740,7 @@ namespace else output << 0.0 << "\t"; } - if (dim == 2) + if (spacedim == 2) output << 0.0 << "\t"; output << std::endl; diff --git a/tests/grid/grid_in_abaqus_02.cc b/tests/grid/grid_in_abaqus_02.cc new file mode 100644 index 0000000000..df1984c0c8 --- /dev/null +++ b/tests/grid/grid_in_abaqus_02.cc @@ -0,0 +1,115 @@ +// --------------------------------------------------------------------- +// +// Copyright (C) 2004 - 2017 by the deal.II authors +// +// This file is part of the deal.II library. +// +// The deal.II library is free software; you can use it, redistribute +// it, and/or modify it under the terms of the GNU Lesser General +// Public License as published by the Free Software Foundation; either +// version 2.1 of the License, or (at your option) any later version. +// The full text of the license can be found in the file LICENSE.md at +// the top level directory of deal.II. +// +// --------------------------------------------------------------------- + + + +// Check whether we can read in with the abaqus format +// Specifically, this tests for the codimension 1 case; previously the +// third dimension was being ignored, effectively projecting the mesh to +// the XY plane. + +#include +#include +#include +#include +#include + +#include "../tests.h" + + + +template +void +abaqus_grid(const std::string path_and_name, + const bool output_grid = false, + const std::string gridout_name = "") +{ + Triangulation tria; + GridIn grid_in; + grid_in.attach_triangulation(tria); + std::ifstream input_file(path_and_name); + grid_in.read_abaqus(input_file); + + deallog << " " << tria.n_active_cells() << " active cells" << std::endl; + + int hash = 0; + int index = 0; + for (typename Triangulation::active_cell_iterator c = + tria.begin_active(); + c != tria.end(); + ++c, ++index) + for (unsigned int i = 0; i < GeometryInfo::vertices_per_cell; ++i) + hash += (index * i * c->vertex_index(i)) % (tria.n_active_cells() + 1); + deallog << " hash=" << hash << std::endl; + + if (output_grid) + { + // Write in uncompressed VTK so that its possible to verify by eye + // that the last coordinate of all nodes is non-zero. + std::ofstream fout_vtk(gridout_name + ".vtk"); + GridOutFlags::Vtk flags_vtk; + flags_vtk.compression_level = DataOutBase::VtkFlags::no_compression; + GridOut gridout; + gridout.set_flags(flags_vtk); + gridout.write_vtk(tria, fout_vtk); + } +} + + +int +main() +{ + initlog(); + + try + { + deallog << "codim_1-tube" << std::endl; + abaqus_grid<2, 3>(SOURCE_DIR "/grids/abaqus/3d/codim_1-tube.inp", + false, + "codim_1-tube"); + deallog << "codim_1-jagged_surface" << std::endl; + abaqus_grid<2, 3>(SOURCE_DIR + "/grids/abaqus/3d/codim_1-jagged_surface.inp", + false, + "codim_1-jagged_surface"); + } + catch (std::exception &exc) + { + deallog << std::endl + << std::endl + << "----------------------------------------------------" + << std::endl; + deallog << "Exception on processing: " << std::endl + << exc.what() << std::endl + << "Aborting!" << std::endl + << "----------------------------------------------------" + << std::endl; + return 1; + } + catch (...) + { + deallog << std::endl + << std::endl + << "----------------------------------------------------" + << std::endl; + deallog << "Unknown exception!" << std::endl + << "Aborting!" << std::endl + << "----------------------------------------------------" + << std::endl; + return 1; + }; + + return 0; +} diff --git a/tests/grid/grid_in_abaqus_02.output b/tests/grid/grid_in_abaqus_02.output new file mode 100644 index 0000000000..4e455ff909 --- /dev/null +++ b/tests/grid/grid_in_abaqus_02.output @@ -0,0 +1,7 @@ + +DEAL::codim_1-tube +DEAL:: 96 active cells +DEAL:: hash=13187 +DEAL::codim_1-jagged_surface +DEAL:: 394 active cells +DEAL:: hash=233401 diff --git 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