optional argument for makereport.py: branch name

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31080 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete directories

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31079 0785d39b-7218-0410-832d-ea1e28bc413d

Finally.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31066 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obosolete test, rename remaining ones, fix output

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31065 0785d39b-7218-0410-832d-ea1e28bc413d

Port the distributed periodicity test, add missing template instantiation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31062 0785d39b-7218-0410-832d-ea1e28bc413d

Port grid_tools_05.cc test to collect_periodic_faces

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31061 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31056 0785d39b-7218-0410-832d-ea1e28bc413d

Do some operations in parallel on tasks.

git-svn-id: https://svn.dealii.org/trunk@31055 0785d39b-7218-0410-832d-ea1e28bc413d

Work around an issue in a copy constructor we needed for C++11 compatibility and Intel's ICC.

git-svn-id: https://svn.dealii.org/trunk@31054 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31053 0785d39b-7218-0410-832d-ea1e28bc413d

Take over revisions 31045 - 31051 from branch_port_the_testsuite

Cleanup GridTools::collect_periodic_*:

 - Remove GridTools::collect_periodic_face_pairs
 - Unify interface for remaining GridTools::collect_periodic_faces
 - Remove deprecated functions that aren't even released
 - Bugfix: Instantiate collect_periodic_faces, this resolves a compilation
   issue with icc

git-svn-id: https://svn.dealii.org/trunk@31052 0785d39b-7218-0410-832d-ea1e28bc413d

... and the second part

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31051 0785d39b-7218-0410-832d-ea1e28bc413d

GridTools::collect_periodic_faces: Port back to "const int" for the direction

It is way too painful to workaround the compiler warnings a "const
unsigned int" produces

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31050 0785d39b-7218-0410-832d-ea1e28bc413d

Next try ;-)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31049 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Instantiate...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31048 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a couple of assertions.

git-svn-id: https://svn.dealii.org/trunk@31047 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete instantiation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31046 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup GridTools::collect_periodic_*:

 - Remove GridTools::collect_periodic_face_pairs
 - Unify interface for remaining GridTools::collect_periodic_faces
 - Remove deprecated functions that aren't even released

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31045 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Link in Intel support libraries dynamically (when not building a static executable)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31044 0785d39b-7218-0410-832d-ea1e28bc413d

Disable warning 327 for Intel compilers. This leads to (correct)
warnings of the kind

File: source/fe/fe_values.cc Line: 430

/.../deal.II/source/fe/fe_values.cc(430): warning #327: NULL reference is not allowed

      fe_values(*static_cast<dealii::FEValuesBase<dim, spacedim>*> (0)),
                ^
          detected during instantiation of "dealii::FEValuesViews::Tensor<2, dim, spacedim>::Tensor() [with dim=1, spacedim=1]" at line 76 of "/usr/include/c++/4.6/bits/stl_construct.h"

But we'd like to use this construct anyway.

git-svn-id: https://svn.dealii.org/trunk@31043 0785d39b-7218-0410-832d-ea1e28bc413d

Merge once more from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31042 0785d39b-7218-0410-832d-ea1e28bc413d

Provide a copy constructor.

git-svn-id: https://svn.dealii.org/trunk@31041 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31039 0785d39b-7218-0410-832d-ea1e28bc413d

Submit more lines around an error, add CTEST_EXTRA_COVERAGE_GLOB

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31038 0785d39b-7218-0410-832d-ea1e28bc413d

Leave a TODO.

git-svn-id: https://svn.dealii.org/trunk@31037 0785d39b-7218-0410-832d-ea1e28bc413d

Add a copy constructor in hopes of making Intel's ICC happy.

git-svn-id: https://svn.dealii.org/trunk@31036 0785d39b-7218-0410-832d-ea1e28bc413d

Merge again from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31034 0785d39b-7218-0410-832d-ea1e28bc413d

Suppress output to console.

git-svn-id: https://svn.dealii.org/trunk@31033 0785d39b-7218-0410-832d-ea1e28bc413d

Move declaration of std::vector out of a loop.

git-svn-id: https://svn.dealii.org/trunk@31032 0785d39b-7218-0410-832d-ea1e28bc413d

Move declaration of std::vector out of loop.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31031 0785d39b-7218-0410-832d-ea1e28bc413d

Try to make older gccs happy.

git-svn-id: https://svn.dealii.org/trunk@31030 0785d39b-7218-0410-832d-ea1e28bc413d

Provide a copy constructor for the Task class. This should make
Intel ICC happy.

git-svn-id: https://svn.dealii.org/trunk@31029 0785d39b-7218-0410-832d-ea1e28bc413d

Provide a copy constructor for the accessor class. This should make
Intel ICC happy.

git-svn-id: https://svn.dealii.org/trunk@31028 0785d39b-7218-0410-832d-ea1e28bc413d

Move comment into the right place.

git-svn-id: https://svn.dealii.org/trunk@31027 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31026 0785d39b-7218-0410-832d-ea1e28bc413d

Document geometry generation.

git-svn-id: https://svn.dealii.org/trunk@31025 0785d39b-7218-0410-832d-ea1e28bc413d

Some more updates.

git-svn-id: https://svn.dealii.org/trunk@31024 0785d39b-7218-0410-832d-ea1e28bc413d

change const bool& parameter to not be a reference in write_hdf5_parallel

git-svn-id: https://svn.dealii.org/trunk@31023 0785d39b-7218-0410-832d-ea1e28bc413d

remove hdf5 related compiler warning

git-svn-id: https://svn.dealii.org/trunk@31022 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo in documentation.

git-svn-id: https://svn.dealii.org/trunk@31021 0785d39b-7218-0410-832d-ea1e28bc413d

Try to align instantiations to declarations, in hopes of fixing bug #122.

git-svn-id: https://svn.dealii.org/trunk@31020 0785d39b-7218-0410-832d-ea1e28bc413d

Provide copy constructors for iterators.

git-svn-id: https://svn.dealii.org/trunk@31019 0785d39b-7218-0410-832d-ea1e28bc413d

More small mods.

git-svn-id: https://svn.dealii.org/trunk@31018 0785d39b-7218-0410-832d-ea1e28bc413d

Further cleanups.

git-svn-id: https://svn.dealii.org/trunk@31017 0785d39b-7218-0410-832d-ea1e28bc413d

Also submit config.h to cdash

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31016 0785d39b-7218-0410-832d-ea1e28bc413d

Update header in example config file

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31015 0785d39b-7218-0410-832d-ea1e28bc413d

Make Wolfgang happy ;-)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31014 0785d39b-7218-0410-832d-ea1e28bc413d

Clean up member variable list somewhat. As far as possible, initialize member variables in the initializer list and then mark them as const.

git-svn-id: https://svn.dealii.org/trunk@31013 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Read in CTestCustom.cmake if available

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31012 0785d39b-7218-0410-832d-ea1e28bc413d

Add a few comments. Fix a couple of oversights where the same function is used for both cell integrals and boundary integrals (though the evaluated function values are, in fact, only used for the boundary integrals).

git-svn-id: https://svn.dealii.org/trunk@31011 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31010 0785d39b-7218-0410-832d-ea1e28bc413d

fix sphere obstacle function

git-svn-id: https://svn.dealii.org/trunk@31009 0785d39b-7218-0410-832d-ea1e28bc413d

Add a small submit_results.cmake script to manually submit test results to CDash

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31008 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Run related MPI tests sequentally to avoid a racecondition when creating the executable

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31007 0785d39b-7218-0410-832d-ea1e28bc413d

Add a newline to the end of the file, as mandated by the C++ standard.

git-svn-id: https://svn.dealii.org/trunk@31006 0785d39b-7218-0410-832d-ea1e28bc413d

Add a newline to the end of the file, as mandated by the C++ standard.

git-svn-id: https://svn.dealii.org/trunk@31005 0785d39b-7218-0410-832d-ea1e28bc413d

Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31004 0785d39b-7218-0410-832d-ea1e28bc413d

Make compile with 64-bit.

git-svn-id: https://svn.dealii.org/trunk@31003 0785d39b-7218-0410-832d-ea1e28bc413d

Revert the last two commits, remove PROCESSORS statement from tests

This was a afternoon of bad ideas...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31002 0785d39b-7218-0410-832d-ea1e28bc413d

Be a bit more agressive with the mpi tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31001 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Avoid a race condition between concurrent invocations of the
same test with different mpirun processes

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31000 0785d39b-7218-0410-832d-ea1e28bc413d

More minor changes.

git-svn-id: https://svn.dealii.org/trunk@30999 0785d39b-7218-0410-832d-ea1e28bc413d

Slightly more cleanup.

git-svn-id: https://svn.dealii.org/trunk@30998 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30997 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Strip path from output name before trying to match

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30996 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Pass complete state down to subprojects

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30995 0785d39b-7218-0410-832d-ea1e28bc413d

Epic Bugfix: Omit "=" in target names so that Unix Makefiles actually run an mpi test...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30994 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Add Generator information to detailed.log

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30993 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Add minimal version requirement for p4est

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30992 0785d39b-7218-0410-832d-ea1e28bc413d

Added DataOutFilter class to remove duplicate vertices/values and serialization for XDMFEntry class

git-svn-id: https://svn.dealii.org/trunk@30991 0785d39b-7218-0410-832d-ea1e28bc413d

Reindent.

git-svn-id: https://svn.dealii.org/trunk@30990 0785d39b-7218-0410-832d-ea1e28bc413d

Rename a couple of things.

git-svn-id: https://svn.dealii.org/trunk@30989 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@30988 0785d39b-7218-0410-832d-ea1e28bc413d

Move around a bit of stuff. More documentation.

git-svn-id: https://svn.dealii.org/trunk@30987 0785d39b-7218-0410-832d-ea1e28bc413d

add revision

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30986 0785d39b-7218-0410-832d-ea1e28bc413d

fix test

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30985 0785d39b-7218-0410-832d-ea1e28bc413d

Move initialization of obstacle into constructor of main class.

git-svn-id: https://svn.dealii.org/trunk@30984 0785d39b-7218-0410-832d-ea1e28bc413d

Port new tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30983 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

Conflicts:
tests/base/graph_coloring_02.cc
tests/base/graph_coloring_03.cc

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30982 0785d39b-7218-0410-832d-ea1e28bc413d

Let the main class only store a pointer to the obstacle, not the object that reads in the file.

git-svn-id: https://svn.dealii.org/trunk@30981 0785d39b-7218-0410-832d-ea1e28bc413d

add

git-svn-id: https://svn.dealii.org/trunk@30980 0785d39b-7218-0410-832d-ea1e28bc413d

merge r30977 from mainline

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30979 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Bugfix - nice try...

git-svn-id: https://svn.dealii.org/trunk@30978 0785d39b-7218-0410-832d-ea1e28bc413d

fix crash in ConstraintMatrix constructor taking IndexSet (release mode only)

git-svn-id: https://svn.dealii.org/trunk@30977 0785d39b-7218-0410-832d-ea1e28bc413d

update test

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30976 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Bugfix: Also include 3rd party include directories in FindPETSC.conf

It is really necessary to use all exported include directories from a PETSc
installation.

git-svn-id: https://svn.dealii.org/trunk@30975 0785d39b-7218-0410-832d-ea1e28bc413d

add simplified test that crashes in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30974 0785d39b-7218-0410-832d-ea1e28bc413d

Avoid infinite loop.

git-svn-id: https://svn.dealii.org/trunk@30973 0785d39b-7218-0410-832d-ea1e28bc413d

Make compile again.

git-svn-id: https://svn.dealii.org/trunk@30972 0785d39b-7218-0410-832d-ea1e28bc413d

small change in update_solution_and_constraints

git-svn-id: https://svn.dealii.org/trunk@30971 0785d39b-7218-0410-832d-ea1e28bc413d

Use std_cxx1x::function for graph_coloring.

git-svn-id: https://svn.dealii.org/trunk@30970 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30969 0785d39b-7218-0410-832d-ea1e28bc413d

The official regression tester is c0541.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30968 0785d39b-7218-0410-832d-ea1e28bc413d

Produce output with more precision, so that numdiff can decide that 0.71 is the same as 0.70 if the actual result is 0.705 plus minus epsilon.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30967 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a test for a function that can not be stably tested.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30966 0785d39b-7218-0410-832d-ea1e28bc413d

Only run test in debug mode.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30965 0785d39b-7218-0410-832d-ea1e28bc413d

fix elasticity test

git-svn-id: https://svn.dealii.org/trunk@30964 0785d39b-7218-0410-832d-ea1e28bc413d

new residual Divergence::u_times_n\
fixed elasticity residuals

git-svn-id: https://svn.dealii.org/trunk@30963 0785d39b-7218-0410-832d-ea1e28bc413d

make html table pretty

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@30962 0785d39b-7218-0410-832d-ea1e28bc413d

fix typo

git-svn-id: https://svn.dealii.org/trunk@30961 0785d39b-7218-0410-832d-ea1e28bc413d