]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
8 years agoFix ReinitHelper for PETSc and test vmult for PETScSparseMatrix 2523/head
ESeNonFossiIo [Mon, 18 Apr 2016 08:49:47 +0000 (10:49 +0200)]
Fix ReinitHelper for PETSc and test vmult for PETScSparseMatrix

8 years agoMerge pull request #2524 from bangerth/minor-fix
Martin Kronbichler [Wed, 20 Apr 2016 09:20:38 +0000 (11:20 +0200)]
Merge pull request #2524 from bangerth/minor-fix

Reset object to native state in IndexSet::clear().

8 years agoReset object to native state in IndexSet::clear(). 2524/head
Wolfgang Bangerth [Wed, 20 Apr 2016 02:53:02 +0000 (21:53 -0500)]
Reset object to native state in IndexSet::clear().

IndexSet stores an index into an array. Upon construction, this index is set
to an invalid value (because the array is empty), whereas after IndexSet::clear()
the index was set to zero -- a perfectly reasonable, and consequently objectionable
index. This patch sets the index to an invalid value instead, as is also
done in the constructor.

8 years agoMerge pull request #2513 from danshapero/index-set-move
Wolfgang Bangerth [Tue, 19 Apr 2016 17:51:59 +0000 (13:51 -0400)]
Merge pull request #2513 from danshapero/index-set-move

Added move constructor to IndexSet

8 years agoAdded move constructor to IndexSet 2513/head
danshapero [Sat, 16 Apr 2016 00:24:11 +0000 (17:24 -0700)]
Added move constructor to IndexSet

8 years agoMerge pull request #2518 from masterleinad/periodicetc
Wolfgang Bangerth [Tue, 19 Apr 2016 12:08:03 +0000 (08:08 -0400)]
Merge pull request #2518 from masterleinad/periodicetc

Use neighbor_or_periodic_neighbor at suitable places

8 years agoFix minor issues in PR2518 2518/head
Daniel Arndt [Tue, 19 Apr 2016 11:50:44 +0000 (13:50 +0200)]
Fix minor issues in PR2518

8 years agoMerge pull request #2517 from kronbichler/master
Martin Kronbichler [Tue, 19 Apr 2016 11:34:25 +0000 (13:34 +0200)]
Merge pull request #2517 from kronbichler/master

Use the same affinity for inner products as for vector updates

8 years agoMerge pull request #2520 from ESeNonFossiIo/PETSc_nullptr
Martin Kronbichler [Tue, 19 Apr 2016 09:37:41 +0000 (11:37 +0200)]
Merge pull request #2520 from ESeNonFossiIo/PETSc_nullptr

Remove nullptr

8 years agoRemove nullptr 2520/head
ESeNonFossiIo [Tue, 19 Apr 2016 08:55:29 +0000 (10:55 +0200)]
Remove nullptr

8 years agoDocument magic constants 2517/head
Martin Kronbichler [Mon, 18 Apr 2016 17:05:08 +0000 (19:05 +0200)]
Document magic constants

8 years agoIncrement index at the position where we do the summation
Martin Kronbichler [Mon, 18 Apr 2016 14:26:08 +0000 (16:26 +0200)]
Increment index at the position where we do the summation

8 years agoUse the same affinity for inner products as for vector updates
Martin Kronbichler [Mon, 18 Apr 2016 09:59:14 +0000 (11:59 +0200)]
Use the same affinity for inner products as for vector updates

8 years agoMerge pull request #2512 from andreamola/min_max_curvatures_in_point_proj_on_surface
Wolfgang Bangerth [Tue, 19 Apr 2016 02:19:48 +0000 (22:19 -0400)]
Merge pull request #2512 from andreamola/min_max_curvatures_in_point_proj_on_surface

closest_point_and_differential_forms changed to return min and max curvatures

8 years agoEntry in changes.h
Daniel Arndt [Mon, 18 Apr 2016 17:16:03 +0000 (19:16 +0200)]
Entry in changes.h

8 years agoTest for periodic boundary conditions using DG and MeshWorker, update other tests
Daniel Arndt [Mon, 18 Apr 2016 15:35:56 +0000 (17:35 +0200)]
Test for periodic boundary conditions using DG and MeshWorker, update other tests

8 years agoFixup periodic_neighbor_is_coarser for refined cells
Daniel Arndt [Mon, 18 Apr 2016 17:04:10 +0000 (19:04 +0200)]
Fixup periodic_neighbor_is_coarser for refined cells

8 years agoperiodic_neighbor in MeshWorker
Daniel Arndt [Thu, 31 Mar 2016 17:57:56 +0000 (19:57 +0200)]
periodic_neighbor in MeshWorker

8 years agoperiodic_neighbor in MGTools::make_flux_sparsity_pattern
Daniel Arndt [Thu, 31 Mar 2016 17:21:45 +0000 (19:21 +0200)]
periodic_neighbor in MGTools::make_flux_sparsity_pattern

8 years agoperiodic_neighbor in DoFTools::make_sparsity_pattern
Daniel Arndt [Tue, 29 Mar 2016 17:26:54 +0000 (19:26 +0200)]
periodic_neighbor in DoFTools::make_sparsity_pattern

8 years agoMerge pull request #2514 from jgedicke/mg_assemble_up_fix
Timo Heister [Mon, 18 Apr 2016 14:09:48 +0000 (16:09 +0200)]
Merge pull request #2514 from jgedicke/mg_assemble_up_fix

fix call of assemble_up in MGMatrixSimple

8 years agochanged normal type in tuple in Tensor<1,3> 2512/head
amola [Sun, 17 Apr 2016 19:24:01 +0000 (21:24 +0200)]
changed normal type in tuple in Tensor<1,3>

8 years agoclosest_point_and_differential_forms and push_forward_and_differential_forms in openc...
amola [Fri, 15 Apr 2016 13:38:09 +0000 (15:38 +0200)]
closest_point_and_differential_forms and push_forward_and_differential_forms in opencascade/utilities have been changed. they now return both min and max curvature instead of the mean one.

8 years agoMerge pull request #2516 from ESeNonFossiIo/fix_old_PETSc_versions
Martin Kronbichler [Mon, 18 Apr 2016 09:36:05 +0000 (11:36 +0200)]
Merge pull request #2516 from ESeNonFossiIo/fix_old_PETSc_versions

Fix a compilation issue of #2502

8 years agoadd guard on PETSc version 2516/head
ESeNonFossiIo [Mon, 18 Apr 2016 09:25:58 +0000 (11:25 +0200)]
add guard on PETSc version

8 years agomore system tests in assembler_simple_mgmatrix_04 2514/head
Joscha Gedicke [Sun, 17 Apr 2016 13:39:44 +0000 (15:39 +0200)]
more system tests in assembler_simple_mgmatrix_04

8 years agomodified assembler_simple_mgmatrix_04 to test for FESystem(RT_0,DGP_0)
Joscha Gedicke [Sun, 17 Apr 2016 12:21:35 +0000 (14:21 +0200)]
modified assembler_simple_mgmatrix_04 to test for FESystem(RT_0,DGP_0)

8 years agoMerge pull request #2515 from kronbichler/fix_mg_test
Wolfgang Bangerth [Sun, 17 Apr 2016 12:06:32 +0000 (08:06 -0400)]
Merge pull request #2515 from kronbichler/fix_mg_test

Adjust test to fixed adaptive multigrid

8 years agoAdjust test to fixed adaptive multigrid 2515/head
Martin Kronbichler [Sun, 17 Apr 2016 06:00:41 +0000 (08:00 +0200)]
Adjust test to fixed adaptive multigrid

8 years agofix call of assemble_up in MGMatrixSimple
Joscha Gedicke [Sat, 16 Apr 2016 18:04:40 +0000 (20:04 +0200)]
fix call of assemble_up in MGMatrixSimple

8 years agoMerge pull request #2507 from kronbichler/master
Wolfgang Bangerth [Sat, 16 Apr 2016 13:33:47 +0000 (08:33 -0500)]
Merge pull request #2507 from kronbichler/master

Introduce affinity partitioner to Vector

8 years agoAdjust memory consumption of vector 2507/head
Martin Kronbichler [Fri, 15 Apr 2016 13:49:10 +0000 (15:49 +0200)]
Adjust memory consumption of vector

8 years agoAvoid setting the partitioner at the place of use
Martin Kronbichler [Fri, 15 Apr 2016 13:48:56 +0000 (15:48 +0200)]
Avoid setting the partitioner at the place of use

8 years agoDo not change partitioners in reinit(n), cleanup code
Martin Kronbichler [Thu, 14 Apr 2016 15:49:57 +0000 (17:49 +0200)]
Do not change partitioners in reinit(n), cleanup code

8 years agoMention change
Martin Kronbichler [Thu, 14 Apr 2016 14:16:22 +0000 (16:16 +0200)]
Mention change

8 years agoImplement affinity partitioner for the deal.II vector class
Martin Kronbichler [Thu, 14 Apr 2016 14:16:13 +0000 (16:16 +0200)]
Implement affinity partitioner for the deal.II vector class

8 years agoMerge pull request #2509 from bangerth/doc-update-58
Martin Kronbichler [Fri, 15 Apr 2016 19:30:24 +0000 (21:30 +0200)]
Merge pull request #2509 from bangerth/doc-update-58

A number of doc updates.

8 years agoMerge pull request #2502 from ESeNonFossiIo/PETSc_reinit_helper
Denis Davydov [Fri, 15 Apr 2016 08:20:56 +0000 (10:20 +0200)]
Merge pull request #2502 from ESeNonFossiIo/PETSc_reinit_helper

PETSc ReinitHelper for LinearOperator

8 years agoUpdate documentation of MGLevelObject. 2509/head
Wolfgang Bangerth [Fri, 15 Apr 2016 04:37:36 +0000 (23:37 -0500)]
Update documentation of MGLevelObject.

8 years agoUpdate a comment about the contents of a file.
Wolfgang Bangerth [Fri, 15 Apr 2016 04:24:17 +0000 (23:24 -0500)]
Update a comment about the contents of a file.

8 years agoMerge pull request #2508 from bangerth/doc-update-57
Timo Heister [Thu, 14 Apr 2016 22:15:28 +0000 (00:15 +0200)]
Merge pull request #2508 from bangerth/doc-update-57

Update a copy-paste error for DoFTools::extract_boundary_dofs().

8 years agoUpdate a copy-paste error for DoFTools::extract_boundary_dofs(). 2508/head
Wolfgang Bangerth [Thu, 14 Apr 2016 21:07:17 +0000 (16:07 -0500)]
Update a copy-paste error for DoFTools::extract_boundary_dofs().

There are two functions of the same name with the same documentation, but in one
the argument is a std::vector<bool> and in the other it is an IndexSet. The former's
documentation was copied from the latter's and referred to the wrong data type.

While there, also mark arguments as [in] or [out].

8 years agoadd check on PETSc contiguos memory 2502/head
ESeNonFossiIo [Thu, 14 Apr 2016 15:15:51 +0000 (17:15 +0200)]
add check on PETSc contiguos memory

8 years agochanges.g
ESeNonFossiIo [Wed, 13 Apr 2016 19:06:26 +0000 (21:06 +0200)]
changes.g

8 years agoPETSc ReinitHelper for BlockVector
ESeNonFossiIo [Wed, 13 Apr 2016 15:15:38 +0000 (17:15 +0200)]
PETSc ReinitHelper for BlockVector

8 years agotest for PETSc Vector reinit helper
ESeNonFossiIo [Tue, 12 Apr 2016 20:11:33 +0000 (22:11 +0200)]
test for PETSc Vector reinit helper

8 years agoPETSc Vector reinit helper
ESeNonFossiIo [Tue, 12 Apr 2016 20:11:16 +0000 (22:11 +0200)]
PETSc Vector reinit helper

8 years agoadd locally_owned_range_indices and locally_owned_domain_indices
ESeNonFossiIo [Tue, 12 Apr 2016 20:09:22 +0000 (22:09 +0200)]
add locally_owned_range_indices and locally_owned_domain_indices

8 years agoadd m() and n() methods
ESeNonFossiIo [Tue, 12 Apr 2016 20:07:38 +0000 (22:07 +0200)]
add m() and n() methods

8 years agoMerge pull request #2503 from danshapero/vector-move-ctor
Matthias Maier [Wed, 13 Apr 2016 20:02:06 +0000 (15:02 -0500)]
Merge pull request #2503 from danshapero/vector-move-ctor

Vector, BlockVector are reset after move

8 years agochangelog 2503/head
danshapero [Wed, 13 Apr 2016 19:00:23 +0000 (12:00 -0700)]
changelog

8 years agoAdded default move ctor/assignment to BlockVector, BlockVectorBase
danshapero [Wed, 13 Apr 2016 05:29:55 +0000 (22:29 -0700)]
Added default move ctor/assignment to BlockVector, BlockVectorBase

This makes a moved BlockVector have the right post-condition, i.e.
the state it would have after default construction.

8 years agoAdded move ctor to BlockIndices
danshapero [Tue, 12 Apr 2016 16:51:45 +0000 (09:51 -0700)]
Added move ctor to BlockIndices

8 years agoChanged the vector move ctor/assignment operator not to use swap
danshapero [Mon, 11 Apr 2016 23:25:22 +0000 (16:25 -0700)]
Changed the vector move ctor/assignment operator not to use swap

8 years agoAdded move assignment operator to Subscriptor
danshapero [Mon, 11 Apr 2016 23:16:58 +0000 (16:16 -0700)]
Added move assignment operator to Subscriptor

8 years agoMerge pull request #2506 from kronbichler/improve_vector_grainsize
Bruno Turcksin [Wed, 13 Apr 2016 18:31:32 +0000 (13:31 -0500)]
Merge pull request #2506 from kronbichler/improve_vector_grainsize

Improve grainsize of vectors, unify vector loops

8 years agoMerge pull request #2466 from tjhei/parmg_missing_neighbors
Martin Kronbichler [Wed, 13 Apr 2016 15:45:26 +0000 (17:45 +0200)]
Merge pull request #2466 from tjhei/parmg_missing_neighbors

rework MG DoF distribution

8 years agoImprove grainsize of vectors, unify vector loops 2506/head
Martin Kronbichler [Wed, 13 Apr 2016 13:42:03 +0000 (15:42 +0200)]
Improve grainsize of vectors, unify vector loops

8 years agoMerge pull request #2501 from tjhei/tensor_mf_followup
Wolfgang Bangerth [Tue, 12 Apr 2016 16:17:03 +0000 (11:17 -0500)]
Merge pull request #2501 from tjhei/tensor_mf_followup

TensorProductManifold followup

8 years agochangelog 2466/head
Timo Heister [Tue, 12 Apr 2016 16:07:54 +0000 (18:07 +0200)]
changelog

8 years agorework MG distribution
Timo Heister [Mon, 4 Apr 2016 12:34:45 +0000 (14:34 +0200)]
rework MG distribution

Fix a rare case of missing level ghost neighbors for geometric
multigrid.

Add sanity checks to confirm several assumptions made in the code to
detect problems like this in the future.

Rework and simplify the logic of distribute_mg_dofs: don't communicate
ghost neighbors by level but all at once and instead of guessing who
will send data, actually request cells from the ghost neighbors.

Add and updated tests.

8 years agochangelog 2501/head
Timo Heister [Tue, 12 Apr 2016 16:00:17 +0000 (18:00 +0200)]
changelog

8 years agorequire muparser for manifold test
Timo Heister [Tue, 12 Apr 2016 16:00:11 +0000 (18:00 +0200)]
require muparser for manifold test

8 years agoMerge pull request #2499 from nicolacavallini/matrix_creator_inst
Luca Heltai [Tue, 12 Apr 2016 14:50:11 +0000 (16:50 +0200)]
Merge pull request #2499 from nicolacavallini/matrix_creator_inst

matrix creator instantiation

8 years agomatrix creator instantiation 2499/head
nicolacavallini [Mon, 11 Apr 2016 14:47:38 +0000 (16:47 +0200)]
matrix creator instantiation

restored codimension zero instatiation

deleted blank line

8 years agoMerge pull request #2416 from tjhei/tensor_mf
Wolfgang Bangerth [Tue, 12 Apr 2016 14:08:28 +0000 (09:08 -0500)]
Merge pull request #2416 from tjhei/tensor_mf

[WIP] implement TensorProductManifold

8 years agoimplement TensorProductManifold 2416/head
Timo Heister [Sat, 26 Mar 2016 05:58:29 +0000 (06:58 +0100)]
implement TensorProductManifold

8 years agoMerge pull request #2497 from kronbichler/fix_cuthill_mckee
Wolfgang Bangerth [Mon, 11 Apr 2016 11:48:18 +0000 (06:48 -0500)]
Merge pull request #2497 from kronbichler/fix_cuthill_mckee

Fix Cuthill-McKee renumbering on large processor counts

8 years agoMerge pull request #2498 from andreamola/read_ucd_manifold_ids_option_test
Luca Heltai [Mon, 11 Apr 2016 11:45:46 +0000 (13:45 +0200)]
Merge pull request #2498 from andreamola/read_ucd_manifold_ids_option_test

Read ucd manifold ids option test

8 years agoimplemented modifications asked by Luca H. on tests/grid/grid_in_ucd_01.cc 2498/head
amola [Mon, 11 Apr 2016 11:05:31 +0000 (13:05 +0200)]
implemented modifications asked by Luca H. on tests/grid/grid_in_ucd_01.cc

8 years agoadded comment on new read_ucd option in doc/news/changes.h
amola [Mon, 11 Apr 2016 10:57:30 +0000 (12:57 +0200)]
added comment on new read_ucd option in doc/news/changes.h

8 years agoindent
amola [Mon, 11 Apr 2016 10:26:19 +0000 (12:26 +0200)]
indent

8 years agoAdded a test for the new read_ucd option that treats identifiers in a ucd file as...
amola [Mon, 11 Apr 2016 10:13:08 +0000 (12:13 +0200)]
Added a test for the new read_ucd option that treats identifiers in a ucd file as manifold_ids instead of boundary_ids

8 years agoFix Cuthill-McKee renumbering on large processor counts 2497/head
Martin Kronbichler [Mon, 11 Apr 2016 09:58:04 +0000 (11:58 +0200)]
Fix Cuthill-McKee renumbering on large processor counts

8 years agoMerge pull request #2483 from gpitton/new_gmres_signals
Martin Kronbichler [Mon, 11 Apr 2016 10:43:01 +0000 (12:43 +0200)]
Merge pull request #2483 from gpitton/new_gmres_signals

Added Hessenberg and Krylov signals to GMRES

8 years agoMerge pull request #2494 from luca-heltai/entry-mapping-manifold
Martin Kronbichler [Mon, 11 Apr 2016 10:41:25 +0000 (12:41 +0200)]
Merge pull request #2494 from luca-heltai/entry-mapping-manifold

Add entry in changes.h for MappingManifold

8 years agoUpdate a comment for a variable. 2483/head
Giuseppe Pitton [Thu, 7 Apr 2016 21:01:56 +0000 (16:01 -0500)]
Update a comment for a variable.

8 years agoAdded entry for MappingManifold. 2494/head
Luca Heltai [Mon, 11 Apr 2016 08:08:47 +0000 (10:08 +0200)]
Added entry for MappingManifold.

8 years agoMerge pull request #2411 from luca-heltai/composition-manifold
Luca Heltai [Mon, 11 Apr 2016 07:51:49 +0000 (09:51 +0200)]
Merge pull request #2411 from luca-heltai/composition-manifold

Composition manifold.

8 years agoImproved comment on periodicity for SphericalManifold. 2411/head
Luca Heltai [Mon, 11 Apr 2016 07:46:43 +0000 (09:46 +0200)]
Improved comment on periodicity for SphericalManifold.

8 years agoRemoved old manifold_tools.h
Luca Heltai [Sat, 9 Apr 2016 12:55:40 +0000 (14:55 +0200)]
Removed old manifold_tools.h

8 years agoAdded comment and entry to changes.h.
Luca Heltai [Sat, 9 Apr 2016 12:48:24 +0000 (14:48 +0200)]
Added comment and entry to changes.h.

8 years agoMoved CompositionManifold to its own directory.
Luca Heltai [Sat, 9 Apr 2016 12:23:54 +0000 (14:23 +0200)]
Moved CompositionManifold to its own directory.

8 years agoPeriodicity as Tensor<1,spacedim>.
Luca Heltai [Wed, 6 Apr 2016 15:20:23 +0000 (17:20 +0200)]
Periodicity as Tensor<1,spacedim>.

8 years agoAdded periodicity getter to ChartManifold
Luca Heltai [Sun, 27 Mar 2016 18:19:23 +0000 (20:19 +0200)]
Added periodicity getter to ChartManifold

8 years agoTest periodicity.
Luca Heltai [Sun, 27 Mar 2016 18:05:13 +0000 (20:05 +0200)]
Test periodicity.

8 years agoComposition of Manifold + Rotation.
Luca Heltai [Fri, 25 Mar 2016 21:14:42 +0000 (22:14 +0100)]
Composition of Manifold + Rotation.

8 years agoInitial CompositionManifold.
Luca Heltai [Thu, 24 Mar 2016 18:10:52 +0000 (19:10 +0100)]
Initial CompositionManifold.

8 years agoMerge pull request #2493 from luca-heltai/mdh266-refactor-trilinos-solvers
Matthias Maier [Sun, 10 Apr 2016 16:26:08 +0000 (11:26 -0500)]
Merge pull request #2493 from luca-heltai/mdh266-refactor-trilinos-solvers

Cleaned version of mdh266 PR (Refactor Trilinos Solvers)

8 years agoRefactored trilinos direct solver 2493/head
Mike Harmon [Sun, 10 Apr 2016 14:54:19 +0000 (16:54 +0200)]
Refactored trilinos direct solver

8 years agoMerge pull request #2488 from bangerth/doc-update-56
Wolfgang Bangerth [Sun, 10 Apr 2016 00:40:51 +0000 (19:40 -0500)]
Merge pull request #2488 from bangerth/doc-update-56

Add a changelog entry.

8 years agoAdd a changelog entry. 2488/head
Wolfgang Bangerth [Fri, 8 Apr 2016 21:05:33 +0000 (16:05 -0500)]
Add a changelog entry.

8 years agoMerge pull request #2462 from kronbichler/change_to_gausslobatto
Luca Heltai [Sat, 9 Apr 2016 16:59:25 +0000 (18:59 +0200)]
Merge pull request #2462 from kronbichler/change_to_gausslobatto

Make Gauss-Lobatto points the default support points in FE_Q/FE_DGQ

8 years agoAdjust test output due to change in elements 2462/head
Martin Kronbichler [Fri, 8 Apr 2016 15:21:55 +0000 (17:21 +0200)]
Adjust test output due to change in elements

8 years agoChange many tests to use equidistant points rather than GL points
Martin Kronbichler [Fri, 8 Apr 2016 15:21:18 +0000 (17:21 +0200)]
Change many tests to use equidistant points rather than GL points

8 years agoFE_Bernstein uses equidistant points
Martin Kronbichler [Fri, 8 Apr 2016 15:20:40 +0000 (17:20 +0200)]
FE_Bernstein uses equidistant points

8 years agoConvert FE_TraceQ to Gauss-Lobatto points for collaboration with FE_Q.
Martin Kronbichler [Fri, 8 Apr 2016 15:20:24 +0000 (17:20 +0200)]
Convert FE_TraceQ to Gauss-Lobatto points for collaboration with FE_Q.

8 years agoMention change
Martin Kronbichler [Tue, 5 Apr 2016 12:51:53 +0000 (14:51 +0200)]
Mention change

8 years agoAdjust tests to better cover Gauss-Lobatto and equidistant points
Martin Kronbichler [Tue, 5 Apr 2016 12:51:44 +0000 (14:51 +0200)]
Adjust tests to better cover Gauss-Lobatto and equidistant points

8 years agoAdjust comments regarding Gauss-Lobatto polynomials
Martin Kronbichler [Tue, 5 Apr 2016 12:50:17 +0000 (14:50 +0200)]
Adjust comments regarding Gauss-Lobatto polynomials


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