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6 years agoMerge pull request #5313 from gassmoeller/fix_mapping_cartesian
Martin Kronbichler [Tue, 24 Oct 2017 18:22:00 +0000 (20:22 +0200)]
Merge pull request #5313 from gassmoeller/fix_mapping_cartesian

Fix mapping cartesian update inverse jacobian

6 years agoFix mapping cartesian 5313/head
Rene Gassmoeller [Tue, 24 Oct 2017 15:40:05 +0000 (09:40 -0600)]
Fix mapping cartesian

6 years agoMerge pull request #5150 from gassmoeller/add_distributed_refinement_signal
Daniel Arndt [Tue, 24 Oct 2017 15:21:45 +0000 (17:21 +0200)]
Merge pull request #5150 from gassmoeller/add_distributed_refinement_signal

Add distributed refinement/coarsening/serialization signals

6 years agoMerge pull request #5302 from GivAlz/test_compute_pt_loc
Martin Kronbichler [Tue, 24 Oct 2017 10:13:53 +0000 (12:13 +0200)]
Merge pull request #5302 from GivAlz/test_compute_pt_loc

Add test for Functions::FEFieldFunction::compute_point_locations

6 years agoAdded test for Functions::FEFieldFunction::compute_point_locations 5302/head
Giovanni Alzetta [Mon, 23 Oct 2017 13:58:31 +0000 (13:58 +0000)]
Added test for Functions::FEFieldFunction::compute_point_locations

6 years agoMerge pull request #5309 from bangerth/minor-cleanups
Martin Kronbichler [Tue, 24 Oct 2017 10:12:58 +0000 (12:12 +0200)]
Merge pull request #5309 from bangerth/minor-cleanups

Minor cleanups and doc updates.

6 years agoAdd a note to the documentation. 5309/head
Wolfgang Bangerth [Tue, 24 Oct 2017 04:24:14 +0000 (22:24 -0600)]
Add a note to the documentation.

6 years agoUse C++11-style initialization of a std::map.
Wolfgang Bangerth [Tue, 24 Oct 2017 04:21:43 +0000 (22:21 -0600)]
Use C++11-style initialization of a std::map.

6 years agoReindent a line.
Wolfgang Bangerth [Tue, 24 Oct 2017 04:19:13 +0000 (22:19 -0600)]
Reindent a line.

6 years agoRemove an unnecessary empty line.
Wolfgang Bangerth [Tue, 24 Oct 2017 04:18:59 +0000 (22:18 -0600)]
Remove an unnecessary empty line.

6 years agoMerge pull request #5307 from Rombur/cuda_fix
Wolfgang Bangerth [Tue, 24 Oct 2017 03:44:29 +0000 (21:44 -0600)]
Merge pull request #5307 from Rombur/cuda_fix

Add missing include in cuda_vector.h

6 years agoAdd missing include in cuda_vector.h 5307/head
Bruno Turcksin [Tue, 24 Oct 2017 01:05:26 +0000 (21:05 -0400)]
Add missing include in cuda_vector.h

6 years agoMerge pull request #5303 from kronbichler/fix_partitioner_import_ghosts
Daniel Arndt [Mon, 23 Oct 2017 23:14:47 +0000 (01:14 +0200)]
Merge pull request #5303 from kronbichler/fix_partitioner_import_ghosts

Make sure to actually zero the ghost entries in partitioner import call.

6 years agoMerge pull request #5306 from bangerth/cleanup
Daniel Arndt [Mon, 23 Oct 2017 23:11:22 +0000 (01:11 +0200)]
Merge pull request #5306 from bangerth/cleanup

Clean up code in MGLevelGlobalTransfer::fill_and_communicate_copy_indices.

6 years agoMerge pull request #5304 from bangerth/rename-member
Daniel Arndt [Mon, 23 Oct 2017 23:09:17 +0000 (01:09 +0200)]
Merge pull request #5304 from bangerth/rename-member

Make Vector::values a std::unique_ptr.

6 years agoClean up code in MGLevelGlobalTransfer::fill_and_communicate_copy_indices. 5306/head
Wolfgang Bangerth [Mon, 23 Oct 2017 19:03:47 +0000 (13:03 -0600)]
Clean up code in MGLevelGlobalTransfer::fill_and_communicate_copy_indices.

6 years agoMake Vector::values a std::unique_ptr. 5304/head
Wolfgang Bangerth [Fri, 20 Oct 2017 22:32:01 +0000 (16:32 -0600)]
Make Vector::values a std::unique_ptr.

6 years agoMerge pull request #5305 from tjhei/readme_qt_styles
Denis Davydov [Mon, 23 Oct 2017 14:45:07 +0000 (16:45 +0200)]
Merge pull request #5305 from tjhei/readme_qt_styles

add note on how to install qtcreator style files

6 years agoadd note on how to install qtcreator style files 5305/head
Timo Heister [Mon, 23 Oct 2017 14:42:49 +0000 (10:42 -0400)]
add note on how to install qtcreator style files

6 years agoMake sure to actually zero the ghost entries in partitioner import call. 5303/head
Martin Kronbichler [Mon, 23 Oct 2017 13:39:15 +0000 (15:39 +0200)]
Make sure to actually zero the ghost entries in partitioner import call.

6 years agoMerge pull request #5275 from bangerth/doc-update-2
Denis Davydov [Mon, 23 Oct 2017 05:42:14 +0000 (07:42 +0200)]
Merge pull request #5275 from bangerth/doc-update-2

Update some discussion in DataOutFilter.

6 years agoMerge pull request #5288 from bangerth/remove-includes
David Wells [Mon, 23 Oct 2017 02:53:54 +0000 (22:53 -0400)]
Merge pull request #5288 from bangerth/remove-includes

Remove unnecessary #include statements.

6 years agoRemove unnecessary #include statements. 5288/head
Wolfgang Bangerth [Fri, 20 Oct 2017 22:07:42 +0000 (16:07 -0600)]
Remove unnecessary #include statements.

These are all in files that don't actually make use of the classes so #included.

6 years agoMerge pull request #5291 from drwells/vector-operation-header
Wolfgang Bangerth [Mon, 23 Oct 2017 00:19:32 +0000 (18:19 -0600)]
Merge pull request #5291 from drwells/vector-operation-header

Move VectorOperation into its own header.

6 years agoMerge pull request #5296 from masterleinad/use_emplace_back
Wolfgang Bangerth [Mon, 23 Oct 2017 00:18:54 +0000 (18:18 -0600)]
Merge pull request #5296 from masterleinad/use_emplace_back

Prefer using emplace_back

6 years agoMerge pull request #5300 from masterleinad/fix_unused
Wolfgang Bangerth [Sun, 22 Oct 2017 23:27:27 +0000 (17:27 -0600)]
Merge pull request #5300 from masterleinad/fix_unused

Fix unused variables, functions and parameters (with clang)

6 years agoMove VectorOperation into its own header. 5291/head
David Wells [Sat, 21 Oct 2017 04:28:20 +0000 (00:28 -0400)]
Move VectorOperation into its own header.

6 years agoMerge pull request #5301 from davydden/cylind_manifold_assert
Timo Heister [Sun, 22 Oct 2017 19:13:00 +0000 (15:13 -0400)]
Merge pull request #5301 from davydden/cylind_manifold_assert

change static_assert into Assert for CylindricalManifold to make it e…

6 years agoMerge pull request #5287 from bangerth/doc-update
Timo Heister [Sun, 22 Oct 2017 19:09:47 +0000 (15:09 -0400)]
Merge pull request #5287 from bangerth/doc-update

Update a formula.

6 years agochange static_assert into Assert for CylindricalManifold to make it easier writing... 5301/head
Denis Davydov [Sun, 22 Oct 2017 15:37:28 +0000 (17:37 +0200)]
change static_assert into Assert for CylindricalManifold to make it easier writing dimension independent code

6 years agoMerge pull request #5299 from davydden/mapping_test_bugfix
Daniel Arndt [Sun, 22 Oct 2017 14:43:33 +0000 (16:43 +0200)]
Merge pull request #5299 from davydden/mapping_test_bugfix

fix wrong operator in mapping_q_eulerian_09

6 years agoCircumvent declaring an unused variable 5300/head
Daniel Arndt [Sun, 22 Oct 2017 13:16:38 +0000 (15:16 +0200)]
Circumvent declaring an unused variable

6 years agoDetect unused variables and unused functions with clang
Daniel Arndt [Sun, 22 Oct 2017 13:12:30 +0000 (15:12 +0200)]
Detect unused variables and unused functions with clang

6 years agoRemove unused named parameter in bundled boost
Daniel Arndt [Sun, 22 Oct 2017 13:06:09 +0000 (15:06 +0200)]
Remove unused named parameter in bundled boost

6 years agoMerge pull request #5283 from tjhei/dof_remove_custom_exc
Daniel Arndt [Sat, 21 Oct 2017 22:07:09 +0000 (00:07 +0200)]
Merge pull request #5283 from tjhei/dof_remove_custom_exc

remove hp::DoFHandler::ExcInvalidTriangulation

6 years agoremove hp::DoFHandler::ExcInvalidTriangulation 5283/head
Timo Heister [Fri, 20 Oct 2017 18:57:22 +0000 (14:57 -0400)]
remove hp::DoFHandler::ExcInvalidTriangulation

for #610

6 years agoMerge pull request #5295 from masterleinad/use_bool_literals
Martin Kronbichler [Sat, 21 Oct 2017 18:12:09 +0000 (20:12 +0200)]
Merge pull request #5295 from masterleinad/use_bool_literals

Use bool literals instead of integer values

6 years agoMerge pull request #5297 from masterleinad/use_nullptr
Martin Kronbichler [Sat, 21 Oct 2017 18:11:18 +0000 (20:11 +0200)]
Merge pull request #5297 from masterleinad/use_nullptr

Prefer using nullptr over 0 or NULL

6 years agofix wrong operator in mapping_q_eulerian_09 5299/head
Denis Davydov [Sat, 21 Oct 2017 17:02:42 +0000 (19:02 +0200)]
fix wrong operator in mapping_q_eulerian_09

6 years agoMerge pull request #5205 from tjhei/child_fe
Daniel Arndt [Sat, 21 Oct 2017 14:40:01 +0000 (16:40 +0200)]
Merge pull request #5205 from tjhei/child_fe

add FiniteElement::get_sub_fe

6 years agoPrefer nullptr 5297/head
Daniel Arndt [Sat, 21 Oct 2017 14:25:36 +0000 (16:25 +0200)]
Prefer nullptr

6 years agoPrefer using emplace_back 5296/head
Daniel Arndt [Sat, 21 Oct 2017 14:15:45 +0000 (16:15 +0200)]
Prefer using emplace_back

6 years agoUse bool literals 5295/head
Daniel Arndt [Sat, 21 Oct 2017 13:56:12 +0000 (15:56 +0200)]
Use bool literals

6 years agoMerge pull request #5273 from bangerth/use-unique-ptrs
Martin Kronbichler [Sat, 21 Oct 2017 13:44:18 +0000 (15:44 +0200)]
Merge pull request #5273 from bangerth/use-unique-ptrs

Use std::unique_ptr for parallel::Vector::val

6 years agoMerge pull request #5292 from masterleinad/fix_perf_1
Daniel Arndt [Sat, 21 Oct 2017 13:38:41 +0000 (15:38 +0200)]
Merge pull request #5292 from masterleinad/fix_perf_1

Take IndexSet by const&

6 years agoMerge pull request #5290 from masterleinad/fix_perf_4
David Wells [Sat, 21 Oct 2017 12:32:44 +0000 (08:32 -0400)]
Merge pull request #5290 from masterleinad/fix_perf_4

Smaller fixes for ParameterAcceptor

6 years agoMerge pull request #5294 from masterleinad/fix_perf_3
David Wells [Sat, 21 Oct 2017 12:30:09 +0000 (08:30 -0400)]
Merge pull request #5294 from masterleinad/fix_perf_3

Mark more variables const (reference)

6 years agoMerge pull request #5293 from masterleinad/fix_perf_2
David Wells [Sat, 21 Oct 2017 12:28:48 +0000 (08:28 -0400)]
Merge pull request #5293 from masterleinad/fix_perf_2

Take hp objects by const (reference) access

6 years agoMark more variables const 5294/head
Daniel Arndt [Fri, 20 Oct 2017 23:40:37 +0000 (01:40 +0200)]
Mark more variables const

6 years agoTake hp objects by const (reference) access 5293/head
Daniel Arndt [Fri, 20 Oct 2017 23:38:25 +0000 (01:38 +0200)]
Take hp objects by const (reference) access

6 years agoTake IndexSet by const& 5292/head
Daniel Arndt [Fri, 20 Oct 2017 23:37:09 +0000 (01:37 +0200)]
Take IndexSet by const&

6 years agoMerge pull request #5282 from bangerth/rename-member
Denis Davydov [Sat, 21 Oct 2017 06:04:14 +0000 (08:04 +0200)]
Merge pull request #5282 from bangerth/rename-member

Rename Vector::val to Vector::values.

6 years agoMerge pull request #5281 from tjhei/dof_tria_assert
Denis Davydov [Sat, 21 Oct 2017 05:16:05 +0000 (07:16 +0200)]
Merge pull request #5281 from tjhei/dof_tria_assert

assert having Triangulation in DoFHandler

6 years agoMerge pull request #5284 from tjhei/smart_ptr_nullptr
Denis Davydov [Sat, 21 Oct 2017 05:13:49 +0000 (07:13 +0200)]
Merge pull request #5284 from tjhei/smart_ptr_nullptr

SmartPointer: use nullptr instead of 0

6 years agoFix ParameterAcceptor 5290/head
Daniel Arndt [Fri, 20 Oct 2017 23:39:46 +0000 (01:39 +0200)]
Fix ParameterAcceptor

6 years agoMerge pull request #5286 from tjhei/std_func_ref
Daniel Arndt [Fri, 20 Oct 2017 23:07:33 +0000 (01:07 +0200)]
Merge pull request #5286 from tjhei/std_func_ref

pass std::function by const reference

6 years agoMerge pull request #5279 from tjhei/doc_fixes
Wolfgang Bangerth [Fri, 20 Oct 2017 21:58:45 +0000 (15:58 -0600)]
Merge pull request #5279 from tjhei/doc_fixes

small documentation fixes

6 years agoRearrange terms in the formula. 5287/head
Wolfgang Bangerth [Fri, 20 Oct 2017 21:51:19 +0000 (15:51 -0600)]
Rearrange terms in the formula.

6 years agoMerge pull request #5285 from jppelteret/doc_fix_02
Timo Heister [Fri, 20 Oct 2017 21:06:44 +0000 (17:06 -0400)]
Merge pull request #5285 from jppelteret/doc_fix_02

Documentation fixes for the Physics::Notation::Kelvin namespace.

6 years agopass std::function by const reference 5286/head
Timo Heister [Fri, 20 Oct 2017 21:01:47 +0000 (17:01 -0400)]
pass std::function by const reference

I think a std::function should be passed by const reference, unless we
are planning on storing a copy (then by value and move).

6 years agoDocumentation fixes for the Physics::Notation::Kelvin namespace. 5285/head
Jean-Paul Pelteret [Fri, 20 Oct 2017 20:42:41 +0000 (22:42 +0200)]
Documentation fixes for the Physics::Notation::Kelvin namespace.

6 years agoSmartPointer: use nullptr instead of 0 5284/head
Timo Heister [Fri, 20 Oct 2017 20:26:16 +0000 (16:26 -0400)]
SmartPointer: use nullptr instead of 0

6 years agoMerge pull request #5239 from tjhei/testsuite_doc_update
Timo Heister [Fri, 20 Oct 2017 20:20:39 +0000 (16:20 -0400)]
Merge pull request #5239 from tjhei/testsuite_doc_update

update testsuite documentation

6 years agoupdate testsuite documentation 5239/head
Timo Heister [Fri, 13 Oct 2017 19:38:00 +0000 (15:38 -0400)]
update testsuite documentation

6 years agosmall documentation fixes 5279/head
Timo Heister [Fri, 20 Oct 2017 18:54:40 +0000 (14:54 -0400)]
small documentation fixes

6 years agoassert having Triangulation in DoFHandler 5281/head
Timo Heister [Fri, 20 Oct 2017 18:57:22 +0000 (14:57 -0400)]
assert having Triangulation in DoFHandler

If you forget to initialize a DoFHandler with a Triangulation,
distribute_dofs() gives an unhelpful Assert() somewhere deep in the
code. Fix this.

6 years agoRename Vector::val to Vector::values. 5282/head
Wolfgang Bangerth [Fri, 20 Oct 2017 19:51:15 +0000 (13:51 -0600)]
Rename Vector::val to Vector::values.

6 years agoMerge pull request #5280 from tjhei/doc_component_to_base_table
Wolfgang Bangerth [Fri, 20 Oct 2017 19:48:14 +0000 (13:48 -0600)]
Merge pull request #5280 from tjhei/doc_component_to_base_table

document FE::doc_component_to_base_table

6 years agodocument FE::doc_component_to_base_table 5280/head
Timo Heister [Fri, 20 Oct 2017 18:55:32 +0000 (14:55 -0400)]
document FE::doc_component_to_base_table

6 years agoMake a type explicit. 5273/head
Wolfgang Bangerth [Fri, 20 Oct 2017 19:00:09 +0000 (13:00 -0600)]
Make a type explicit.

6 years agoadd FiniteElement::get_sub_fe 5205/head
Timo Heister [Fri, 6 Oct 2017 18:46:06 +0000 (14:46 -0400)]
add FiniteElement::get_sub_fe

6 years agoMerge pull request #5271 from masterleinad/cuda_quick
Daniel Arndt [Fri, 20 Oct 2017 16:56:47 +0000 (18:56 +0200)]
Merge pull request #5271 from masterleinad/cuda_quick

Add CUDA quick test

6 years agoMake sure we call 'free()' instead of 'delete[]'.
Wolfgang Bangerth [Fri, 20 Oct 2017 16:52:44 +0000 (10:52 -0600)]
Make sure we call 'free()' instead of 'delete[]'.

6 years agoMerge pull request #5274 from bangerth/doc-update
Timo Heister [Fri, 20 Oct 2017 16:32:44 +0000 (12:32 -0400)]
Merge pull request #5274 from bangerth/doc-update

Update some discussion in step-9.

6 years agoUpdate some discussion in DataOutFilter. 5275/head
Wolfgang Bangerth [Fri, 20 Oct 2017 16:29:47 +0000 (10:29 -0600)]
Update some discussion in DataOutFilter.

In particular, warn about the dangers of using this class.

6 years agoUpdate some discussion in step-9. 5274/head
Wolfgang Bangerth [Fri, 20 Oct 2017 16:28:50 +0000 (10:28 -0600)]
Update some discussion in step-9.

6 years agoSimplify destructor.
Wolfgang Bangerth [Fri, 20 Oct 2017 16:26:16 +0000 (10:26 -0600)]
Simplify destructor.

6 years agoRename parallel::Vector::val to parallel::Vector::values.
Wolfgang Bangerth [Fri, 20 Oct 2017 16:08:06 +0000 (10:08 -0600)]
Rename parallel::Vector::val to parallel::Vector::values.

6 years agoAlso make parallel::Vector::val a std::unique_ptr.
Wolfgang Bangerth [Fri, 20 Oct 2017 15:57:46 +0000 (09:57 -0600)]
Also make parallel::Vector::val a std::unique_ptr.

6 years agoMerge pull request #5250 from jppelteret/physics-notation
Wolfgang Bangerth [Fri, 20 Oct 2017 16:06:55 +0000 (10:06 -0600)]
Merge pull request #5250 from jppelteret/physics-notation

Add Kelvin notation to the physics module.

6 years agoMerge pull request #5272 from masterleinad/initialize_partitioner
Daniel Arndt [Fri, 20 Oct 2017 15:39:43 +0000 (17:39 +0200)]
Merge pull request #5272 from masterleinad/initialize_partitioner

Initialize all variables in Partitioner

6 years agoInitialize all variables in Partitioner 5272/head
Daniel Arndt [Fri, 20 Oct 2017 14:31:04 +0000 (16:31 +0200)]
Initialize all variables in Partitioner

6 years agoAdd AssertCuda checks 5271/head
Daniel Arndt [Fri, 20 Oct 2017 14:20:59 +0000 (16:20 +0200)]
Add AssertCuda checks

6 years agoAdd CUDA quick test
Daniel Arndt [Fri, 20 Oct 2017 12:48:12 +0000 (14:48 +0200)]
Add CUDA quick test

6 years agoMerge pull request #5248 from masterleinad/fix_ub_new_2
David Wells [Fri, 20 Oct 2017 13:02:02 +0000 (09:02 -0400)]
Merge pull request #5248 from masterleinad/fix_ub_new_2

Make sure to not call memset with a nullptr

6 years agoMerge pull request #5270 from kronbichler/fix_partitioner_abs
Martin Kronbichler [Fri, 20 Oct 2017 09:55:08 +0000 (11:55 +0200)]
Merge pull request #5270 from kronbichler/fix_partitioner_abs

Avoid std::abs() on unsigned types.

6 years agoMerge pull request #5268 from bangerth/use-unique-ptrs
Martin Kronbichler [Fri, 20 Oct 2017 09:21:30 +0000 (11:21 +0200)]
Merge pull request #5268 from bangerth/use-unique-ptrs

Use unique_ptr instead of raw pointers in distributed::Vector.

6 years agoAvoid anonymous namespace. 5270/head
Martin Kronbichler [Fri, 20 Oct 2017 08:28:16 +0000 (10:28 +0200)]
Avoid anonymous namespace.

6 years agoMerge pull request #5240 from gassmoeller/particle_fixes
Denis Davydov [Fri, 20 Oct 2017 08:13:51 +0000 (10:13 +0200)]
Merge pull request #5240 from gassmoeller/particle_fixes

Particle serialization fixes

6 years agoAvoid std::abs() on unsigned types.
Martin Kronbichler [Fri, 20 Oct 2017 07:23:59 +0000 (09:23 +0200)]
Avoid std::abs() on unsigned types.

6 years agoSwap order of arguments for `to_tensor` function 5250/head
Jean-Paul Pelteret [Fri, 20 Oct 2017 05:49:19 +0000 (07:49 +0200)]
Swap order of arguments for `to_tensor` function

6 years agoAdd missing documentation on output vector/matrix sizes.
Jean-Paul Pelteret [Fri, 20 Oct 2017 05:42:00 +0000 (07:42 +0200)]
Add missing documentation on output vector/matrix sizes.

6 years agoUse unique_ptr instead of raw pointers in distributed::Vector. 5268/head
Wolfgang Bangerth [Thu, 19 Oct 2017 15:08:32 +0000 (09:08 -0600)]
Use unique_ptr instead of raw pointers in distributed::Vector.

6 years agoMerge pull request #5263 from luca-heltai/find-active-cell-with-cache
Wolfgang Bangerth [Thu, 19 Oct 2017 23:50:30 +0000 (17:50 -0600)]
Merge pull request #5263 from luca-heltai/find-active-cell-with-cache

Find active cell using Cache.

6 years agoMerge pull request #5259 from kronbichler/extend_mpi_partitioner
Wolfgang Bangerth [Thu, 19 Oct 2017 23:07:10 +0000 (17:07 -0600)]
Merge pull request #5259 from kronbichler/extend_mpi_partitioner

Extend mpi partitioner

6 years agoMerge pull request #5266 from davydden/mf_operators_diagonal
Daniel Arndt [Thu, 19 Oct 2017 22:38:48 +0000 (00:38 +0200)]
Merge pull request #5266 from davydden/mf_operators_diagonal

add a boolean flag to MatrixFreeOperators::Base::compute_diagonal() t…

6 years agoAdd Kelvin notation to the physics module.
Jean-Paul Pelteret [Mon, 16 Oct 2017 06:37:15 +0000 (08:37 +0200)]
Add Kelvin notation to the physics module.

6 years agoextend MatrixFreeOperators::Base to store the diagonal of the operator. 5266/head
Denis Davydov [Thu, 19 Oct 2017 09:27:42 +0000 (11:27 +0200)]
extend MatrixFreeOperators::Base to store the diagonal of the operator.

6 years agoSerialization fixes 5240/head
Rene Gassmoeller [Thu, 19 Oct 2017 16:01:05 +0000 (10:01 -0600)]
Serialization fixes

6 years agoAdd tests for the reduced MPI communication. 5259/head
Martin Kronbichler [Thu, 19 Oct 2017 12:32:37 +0000 (14:32 +0200)]
Add tests for the reduced MPI communication.


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