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dealii.git
4 years agoChange particle generation
blaisb [Tue, 2 Jun 2020 13:11:02 +0000 (09:11 -0400)]
Change particle generation

4 years agoWorking example with properties
blaisb [Fri, 29 May 2020 18:59:03 +0000 (14:59 -0400)]
Working example with properties

4 years agoTemporary working version while I fix properties
blaisb [Fri, 29 May 2020 14:33:53 +0000 (10:33 -0400)]
Temporary working version while I fix properties

4 years agoApplied all comments on documentation
blaisb [Fri, 29 May 2020 12:29:04 +0000 (08:29 -0400)]
Applied all comments on documentation

4 years agoUpdate examples/step-68/doc/tooltip
Bruno Blais [Fri, 29 May 2020 11:50:03 +0000 (07:50 -0400)]
Update examples/step-68/doc/tooltip

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:56 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:39 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Rene Gassmoeller <rene.gassmoeller@mailbox.org>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:21 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:14 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/results.dox
Bruno Blais [Fri, 29 May 2020 11:49:06 +0000 (07:49 -0400)]
Update examples/step-68/doc/results.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/step-68.cc
Bruno Blais [Fri, 29 May 2020 11:48:48 +0000 (07:48 -0400)]
Update examples/step-68/step-68.cc

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/step-68.cc
Bruno Blais [Fri, 29 May 2020 11:48:24 +0000 (07:48 -0400)]
Update examples/step-68/step-68.cc

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:48:15 +0000 (07:48 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:48:00 +0000 (07:48 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:47:50 +0000 (07:47 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoUpdate examples/step-68/doc/intro.dox
Bruno Blais [Fri, 29 May 2020 11:47:42 +0000 (07:47 -0400)]
Update examples/step-68/doc/intro.dox

Co-authored-by: Peter Munch <peterrmuench@gmail.com>
4 years agoAddress some comments
Rene Gassmoeller [Thu, 28 May 2020 21:22:43 +0000 (14:22 -0700)]
Address some comments

4 years agoExtend documentation
Rene Gassmoeller [Thu, 28 May 2020 21:02:33 +0000 (14:02 -0700)]
Extend documentation

4 years agoAdded the documentation for step-58
blaisb [Thu, 28 May 2020 04:02:35 +0000 (00:02 -0400)]
Added the documentation for step-58
- Added introduction
- Commented to code fully
- Added results section
- Put animations on youtube

TODO :
- 2 places where additions by Rene would be appreciated
- Add particle properties and output them

4 years agoMake indent
Rene Gassmoeller [Fri, 22 May 2020 17:13:16 +0000 (10:13 -0700)]
Make indent

4 years agoAdd load balancing.
Rene Gassmoeller [Fri, 22 May 2020 17:11:17 +0000 (10:11 -0700)]
Add load balancing.

4 years agoAddresses the first comments of Peter
blaisb [Fri, 22 May 2020 16:51:22 +0000 (12:51 -0400)]
Addresses the first comments of Peter

4 years agoAdded a preliminary version of step-x for particle tracking on analytically defined...
blaisb [Fri, 22 May 2020 05:24:54 +0000 (01:24 -0400)]
Added a preliminary version of step-x for particle tracking on analytically defined velocity field

4 years agoMerge pull request #10885 from agrayver/python_cell_wrapper
Daniel Arndt [Tue, 15 Sep 2020 19:00:19 +0000 (15:00 -0400)]
Merge pull request #10885 from agrayver/python_cell_wrapper

4 years agoMerge pull request #10856 from Rombur/cuda_cmake_18
Daniel Arndt [Tue, 15 Sep 2020 15:33:55 +0000 (11:33 -0400)]
Merge pull request #10856 from Rombur/cuda_cmake_18

Fix warnings when using cmake 3.18

4 years agoMerge pull request #10875 from agrayver/python_wrappers
Bruno Turcksin [Tue, 15 Sep 2020 15:31:57 +0000 (11:31 -0400)]
Merge pull request #10875 from agrayver/python_wrappers

4 years agoAdd method for returning all triangulation cells 10885/head
Alexander Grayver [Thu, 3 Sep 2020 14:06:41 +0000 (16:06 +0200)]
Add method for returning all triangulation cells

4 years agoAdd an incompatibility note and optional args
Alexander Grayver [Thu, 3 Sep 2020 07:45:30 +0000 (09:45 +0200)]
Add an incompatibility note and optional args

4 years agoUpdate tutotial program
Alexander Grayver [Wed, 2 Sep 2020 07:20:33 +0000 (09:20 +0200)]
Update tutotial program

4 years agoAdd changelog item
Alexander Grayver [Tue, 1 Sep 2020 20:26:38 +0000 (22:26 +0200)]
Add changelog item

4 years agoAdd python wrappers
Alexander Grayver [Tue, 1 Sep 2020 20:22:23 +0000 (22:22 +0200)]
Add python wrappers

4 years agoAdd an incompatibility note and optional args 10875/head
Alexander Grayver [Thu, 3 Sep 2020 07:45:30 +0000 (09:45 +0200)]
Add an incompatibility note and optional args

4 years agoUpdate tutotial program
Alexander Grayver [Wed, 2 Sep 2020 07:20:33 +0000 (09:20 +0200)]
Update tutotial program

4 years agoAdd changelog item
Alexander Grayver [Tue, 1 Sep 2020 20:26:38 +0000 (22:26 +0200)]
Add changelog item

4 years agoAdd python wrappers
Alexander Grayver [Tue, 1 Sep 2020 20:22:23 +0000 (22:22 +0200)]
Add python wrappers

4 years agoMerge pull request #10858 from gassmoeller/add_copy_from_particle_handler
Timo Heister [Mon, 14 Sep 2020 16:55:05 +0000 (12:55 -0400)]
Merge pull request #10858 from gassmoeller/add_copy_from_particle_handler

Add copy from particle handler

4 years agoMerge pull request #10913 from tjhei/doc_sparsity_it
Daniel Arndt [Mon, 14 Sep 2020 16:12:23 +0000 (12:12 -0400)]
Merge pull request #10913 from tjhei/doc_sparsity_it

SparsityPattern: improve documentation

4 years agoSparsityPattern: improve documentation 10913/head
Timo Heister [Mon, 14 Sep 2020 13:53:31 +0000 (09:53 -0400)]
SparsityPattern: improve documentation

My students rightfully complained, that it is very difficult to find
begin() (hidden in the base class) and the accessor functions (hidden
behind using).

4 years agoMerge pull request #10910 from peterrum/categorize_by_boundary_ids_pbc
Martin Kronbichler [Mon, 14 Sep 2020 07:01:40 +0000 (09:01 +0200)]
Merge pull request #10910 from peterrum/categorize_by_boundary_ids_pbc

Fix categorize_by_boundary_ids for PBC

4 years agoFix categorize_by_boundary_ids for PBC 10910/head
Peter Munch [Sun, 13 Sep 2020 09:43:45 +0000 (11:43 +0200)]
Fix categorize_by_boundary_ids for PBC

4 years agoMerge pull request #10907 from Rombur/grid_in
Peter Munch [Sun, 13 Sep 2020 05:59:45 +0000 (07:59 +0200)]
Merge pull request #10907 from Rombur/grid_in

Add a constructor to GridIn and extend read(std::string)

4 years agoMerge pull request #10901 from kronbichler/fe_evaluation_mapping_part
Peter Munch [Sun, 13 Sep 2020 05:59:10 +0000 (07:59 +0200)]
Merge pull request #10901 from kronbichler/fe_evaluation_mapping_part

Split out mapping-related part from FEEvaluationBase into base class

4 years agoSplit out mapping-related part from FEEvaluationBase into base class 10901/head
Martin Kronbichler [Thu, 10 Sep 2020 14:57:31 +0000 (16:57 +0200)]
Split out mapping-related part from FEEvaluationBase into base class

4 years agoMerge pull request #10906 from Rombur/tensor_product_warnings
Peter Munch [Sat, 12 Sep 2020 19:01:58 +0000 (21:01 +0200)]
Merge pull request #10906 from Rombur/tensor_product_warnings

Fix warning: declaration of dim hides template parameter when using CUDA

4 years agoMerge pull request #10905 from zjiaqi2018/step12-builds-on
David Wells [Sat, 12 Sep 2020 17:27:40 +0000 (13:27 -0400)]
Merge pull request #10905 from zjiaqi2018/step12-builds-on

remove builds-on 39->12

4 years agoMerge pull request #10908 from tjhei/doc_cell_neighbor_index
Peter Munch [Sat, 12 Sep 2020 12:51:17 +0000 (14:51 +0200)]
Merge pull request #10908 from tjhei/doc_cell_neighbor_index

improve documentation and arg naming of cell neighbor*()

4 years agoMerge pull request #10904 from kronbichler/remove_ncomponents_template
Peter Munch [Sat, 12 Sep 2020 09:00:05 +0000 (11:00 +0200)]
Merge pull request #10904 from kronbichler/remove_ncomponents_template

FEEvaluationFaceImpl: Remove n_components template argument

4 years agoFEEvaluationFaceImpl: Remove n_components template argument 10904/head
Martin Kronbichler [Fri, 11 Sep 2020 15:42:58 +0000 (17:42 +0200)]
FEEvaluationFaceImpl: Remove n_components template argument

4 years agoimprove documentation and arg naming of cell neighbor*() 10908/head
Timo Heister [Sat, 12 Sep 2020 00:37:07 +0000 (20:37 -0400)]
improve documentation and arg naming of cell neighbor*()

My students rightfully got confused about the documentation and the
confusing argument name i. Try to fix things.

4 years agoFix warning: declaration of dim hides template parameter when using CUDA 10906/head
Bruno Turcksin [Fri, 11 Sep 2020 21:11:38 +0000 (21:11 +0000)]
Fix warning: declaration of dim hides template parameter when using CUDA

4 years agoAdd read_assimp inside GridIn<dim,spacedim>::read(std::string) 10907/head
Bruno Turcksin [Fri, 11 Sep 2020 21:01:43 +0000 (21:01 +0000)]
Add read_assimp inside GridIn<dim,spacedim>::read(std::string)

4 years agoAdd constructor to GridIn that directly attaches the Triangulation
Bruno Turcksin [Fri, 11 Sep 2020 20:45:34 +0000 (20:45 +0000)]
Add constructor to GridIn that directly attaches the Triangulation

4 years agoremove builds-on 39->12 10905/head
Jiaqi Zhang [Fri, 11 Sep 2020 18:14:23 +0000 (14:14 -0400)]
remove builds-on 39->12

4 years agoAdd changelog entry 10858/head
Rene Gassmoeller [Fri, 28 Aug 2020 21:46:16 +0000 (17:46 -0400)]
Add changelog entry

4 years agoAdd ParticleHandler::copy_from function.
Rene Gassmoeller [Fri, 28 Aug 2020 21:44:02 +0000 (17:44 -0400)]
Add ParticleHandler::copy_from function.

4 years agoFix warnings when using cmake 3.18 10856/head
Bruno Turcksin [Wed, 9 Sep 2020 17:50:55 +0000 (17:50 +0000)]
Fix warnings when using cmake 3.18

4 years agoMerge pull request #10896 from peterrum/apply_face
Martin Kronbichler [Mon, 7 Sep 2020 20:42:07 +0000 (22:42 +0200)]
Merge pull request #10896 from peterrum/apply_face

EvaluatorTensorProduct::apply_face for higher dimensions

4 years agoEvaluatorTensorProduct::apply_face for higher dimensions 10896/head
Peter Munch [Sat, 5 Sep 2020 19:59:29 +0000 (21:59 +0200)]
EvaluatorTensorProduct::apply_face for higher dimensions

4 years agoMerge pull request #10895 from peterrum/mf_array
Martin Kronbichler [Sun, 6 Sep 2020 10:11:11 +0000 (12:11 +0200)]
Merge pull request #10895 from peterrum/mf_array

Replace C-style arrays in MatrixFree

4 years agoReplace C-style arrays in MatrixFree 10895/head
Peter Munch [Sat, 5 Sep 2020 19:02:32 +0000 (21:02 +0200)]
Replace C-style arrays in MatrixFree

4 years agoMerge pull request #10892 from bangerth/lambda
Peter Munch [Fri, 4 Sep 2020 20:34:06 +0000 (22:34 +0200)]
Merge pull request #10892 from bangerth/lambda

Use lambdas to make code more readable.

4 years agoMerge pull request #10893 from bangerth/parens
David Wells [Fri, 4 Sep 2020 18:35:09 +0000 (14:35 -0400)]
Merge pull request #10893 from bangerth/parens

Use parentheses to make code easier to read.

4 years agoUse parentheses to make code easier to read. 10893/head
Wolfgang Bangerth [Fri, 4 Sep 2020 17:08:31 +0000 (11:08 -0600)]
Use parentheses to make code easier to read.

4 years agoUse lambdas to make code more readable. 10892/head
Wolfgang Bangerth [Fri, 4 Sep 2020 17:00:10 +0000 (11:00 -0600)]
Use lambdas to make code more readable.

4 years agoMerge pull request #10871 from peterrum/categorize_accoring_boundary_ids_for_ecl
Martin Kronbichler [Fri, 4 Sep 2020 14:43:02 +0000 (16:43 +0200)]
Merge pull request #10871 from peterrum/categorize_accoring_boundary_ids_for_ecl

Add MatrixFreeTools::categorize_by_boundary_ids

4 years agoMerge pull request #10891 from peterrum/FEFaceNormalEvaluationImpl_dimension_independent
Martin Kronbichler [Fri, 4 Sep 2020 14:40:46 +0000 (16:40 +0200)]
Merge pull request #10891 from peterrum/FEFaceNormalEvaluationImpl_dimension_independent

Make FEFaceNormalEvaluationImpl dimension independent

4 years agoMerge pull request #10890 from peterrum/mf_categorization_assert_message
Daniel Arndt [Fri, 4 Sep 2020 14:28:47 +0000 (10:28 -0400)]
Merge pull request #10890 from peterrum/mf_categorization_assert_message

Improve assert message

4 years agoMake FEFaceNormalEvaluationImpl dimension independent 10891/head
Peter Munch [Fri, 4 Sep 2020 10:05:41 +0000 (12:05 +0200)]
Make FEFaceNormalEvaluationImpl dimension independent

4 years agoMerge pull request #10889 from peterrum/enable_bv_for_gahter_evaluate_follow_up
Martin Kronbichler [Fri, 4 Sep 2020 09:32:30 +0000 (11:32 +0200)]
Merge pull request #10889 from peterrum/enable_bv_for_gahter_evaluate_follow_up

Remove VectorType from FEFaceEvaluationSelector

4 years agoImprove assert message 10890/head
Peter Munch [Fri, 4 Sep 2020 09:24:26 +0000 (11:24 +0200)]
Improve assert message

4 years agoAdd MatrixFreeTools::categorize_accoring_boundary_ids_for_ecl 10871/head
Peter Munch [Tue, 1 Sep 2020 10:50:06 +0000 (12:50 +0200)]
Add MatrixFreeTools::categorize_accoring_boundary_ids_for_ecl

4 years agoMerge pull request #10869 from peterrum/do_backward_hessians
Martin Kronbichler [Fri, 4 Sep 2020 07:40:32 +0000 (09:40 +0200)]
Merge pull request #10869 from peterrum/do_backward_hessians

Add FEEvaluationImplBasisChange::do_backward_hessians

4 years agoMerge pull request #10870 from peterrum/quadrature_data_on_face
Martin Kronbichler [Fri, 4 Sep 2020 07:40:12 +0000 (09:40 +0200)]
Merge pull request #10870 from peterrum/quadrature_data_on_face

Work on interpolation from cell to face quadrature points

4 years agoRemove VectorType from FEFaceEvaluationSelector 10889/head
Peter Munch [Thu, 3 Sep 2020 21:52:20 +0000 (23:52 +0200)]
Remove VectorType from FEFaceEvaluationSelector

4 years agoMerge pull request #10888 from elauksap/simplex_clang-format
Timo Heister [Thu, 3 Sep 2020 23:24:41 +0000 (19:24 -0400)]
Merge pull request #10888 from elauksap/simplex_clang-format

Properly sort #include <deal.II/simplex/*.h>

4 years agoMerge pull request #10883 from kronbichler/fix_extract_dofs
Wolfgang Bangerth [Thu, 3 Sep 2020 19:05:40 +0000 (13:05 -0600)]
Merge pull request #10883 from kronbichler/fix_extract_dofs

Speed up DoFTools::extract_dofs

4 years agoChange 10869/head
Peter Munch [Thu, 3 Sep 2020 18:39:03 +0000 (20:39 +0200)]
Change

4 years agoWork on interpolation from cell to face quadrature points 10870/head
Peter Munch [Tue, 1 Sep 2020 10:48:10 +0000 (12:48 +0200)]
Work on interpolation from cell to face quadrature points

4 years agoProperly format #include <deal.II/simplex/*.h> 10888/head
Pasquale Africa [Thu, 3 Sep 2020 14:43:09 +0000 (14:43 +0000)]
Properly format #include <deal.II/simplex/*.h>

4 years agoMerge pull request #10865 from peterrum/enable_bv_for_gahter_evaluate
Martin Kronbichler [Thu, 3 Sep 2020 13:13:32 +0000 (15:13 +0200)]
Merge pull request #10865 from peterrum/enable_bv_for_gahter_evaluate

Enable BlockVector for FEEvaluation::gather_evalute()

4 years agoSpeed up DoFTools::extract_dofs 10883/head
Martin Kronbichler [Thu, 3 Sep 2020 11:50:17 +0000 (13:50 +0200)]
Speed up DoFTools::extract_dofs

4 years agoEnabel BlockVector for FEEvaluation::gather_evalute() 10865/head
Peter Munch [Mon, 31 Aug 2020 14:27:05 +0000 (16:27 +0200)]
Enabel BlockVector for FEEvaluation::gather_evalute()

4 years agoMerge pull request #10880 from bangerth/doc
Martin Kronbichler [Thu, 3 Sep 2020 06:02:13 +0000 (08:02 +0200)]
Merge pull request #10880 from bangerth/doc

Improve documentation of a rather basic function.

4 years agoMerge pull request #10876 from kronbichler/improve_tensor_3x3_invert
Wolfgang Bangerth [Thu, 3 Sep 2020 00:12:39 +0000 (18:12 -0600)]
Merge pull request #10876 from kronbichler/improve_tensor_3x3_invert

Reorder computations in inversion of 3x3 tensor

4 years agoMerge pull request #10879 from drwells/memory-space-virtual-dtor
Wolfgang Bangerth [Thu, 3 Sep 2020 00:09:58 +0000 (18:09 -0600)]
Merge pull request #10879 from drwells/memory-space-virtual-dtor

Use a virtual destructor with virtual methods.

4 years agoImprove documentation of a rather basic function. 10880/head
Wolfgang Bangerth [Wed, 2 Sep 2020 22:47:16 +0000 (16:47 -0600)]
Improve documentation of a rather basic function.

4 years agoUse a virtual destructor with virtual methods. 10879/head
David Wells [Wed, 2 Sep 2020 17:16:29 +0000 (13:16 -0400)]
Use a virtual destructor with virtual methods.

4 years agoMerge pull request #10878 from peterrum/small_docu_fixes
Martin Kronbichler [Wed, 2 Sep 2020 16:05:11 +0000 (18:05 +0200)]
Merge pull request #10878 from peterrum/small_docu_fixes

Small fixes in the documentation of L:d:V

4 years agoSmall fixes in the documentatio of L:d:V 10878/head
Peter Munch [Wed, 2 Sep 2020 14:27:28 +0000 (16:27 +0200)]
Small fixes in the documentatio of L:d:V

4 years agoMerge pull request #10877 from peterrum/docu_fix
David Wells [Wed, 2 Sep 2020 13:24:39 +0000 (09:24 -0400)]
Merge pull request #10877 from peterrum/docu_fix

Fix statement in documentation

4 years agoFix statement in documentation 10877/head
Peter Munch [Wed, 2 Sep 2020 12:59:01 +0000 (14:59 +0200)]
Fix statement in documentation

4 years agoReorder computations in inversion of 3x3 tensor 10876/head
Martin Kronbichler [Wed, 2 Sep 2020 12:31:54 +0000 (14:31 +0200)]
Reorder computations in inversion of 3x3 tensor

4 years agoMerge pull request #10852 from elauksap/simplex_hdf5
Peter Munch [Wed, 2 Sep 2020 05:14:44 +0000 (07:14 +0200)]
Merge pull request #10852 from elauksap/simplex_hdf5

Support to HDF5 export of data on simplex meshes

4 years agoMerge pull request #10835 from peterrum/pick_up_test_arg
Peter Munch [Wed, 2 Sep 2020 05:14:09 +0000 (07:14 +0200)]
Merge pull request #10835 from peterrum/pick_up_test_arg

Optional argument for DEAL_II_PICKUP_TESTS

4 years agoMerge pull request #10873 from peterrum/memory_space
Daniel Arndt [Wed, 2 Sep 2020 03:10:28 +0000 (23:10 -0400)]
Merge pull request #10873 from peterrum/memory_space

Make MemorySpaceData virtual

4 years agoMerge pull request #10874 from tamiko/cleanup
Timo Heister [Tue, 1 Sep 2020 23:37:47 +0000 (19:37 -0400)]
Merge pull request #10874 from tamiko/cleanup

CMake: Remove DEAL_II_CXX_VERSION_FLAG

4 years agoMake MemorySpaceData virtual 10873/head
Peter Munch [Tue, 1 Sep 2020 17:17:27 +0000 (19:17 +0200)]
Make MemorySpaceData virtual

4 years agoCMake: Remove DEAL_II_CXX_VERSION_FLAG 10874/head
Matthias Maier [Tue, 1 Sep 2020 19:45:26 +0000 (14:45 -0500)]
CMake: Remove DEAL_II_CXX_VERSION_FLAG

This variable is no longer populated. Remove all occurences.

4 years agoOptional argument for DEAL_II_PICKUP_TESTS 10835/head
Peter Munch [Mon, 17 Aug 2020 19:29:34 +0000 (21:29 +0200)]
Optional argument for DEAL_II_PICKUP_TESTS

4 years agoMerge pull request #10860 from drwells/remove-deletes
Daniel Arndt [Tue, 1 Sep 2020 13:58:47 +0000 (09:58 -0400)]
Merge pull request #10860 from drwells/remove-deletes

Wrap some more calls to delete with unique_ptr.


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