]> https://gitweb.dealii.org/ - dealii-svn.git/log
dealii-svn.git
10 years agoFix a bug reported by Christoph Heiniger (including a description of how it should...
bangerth [Mon, 3 Feb 2014 17:06:24 +0000 (17:06 +0000)]
Fix a bug reported by Christoph Heiniger (including a description of how it should be fixed): The computation of curls was wrong.

git-svn-id: https://svn.dealii.org/trunk@32394 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix example code that trips up doxygen
heister [Mon, 3 Feb 2014 16:25:32 +0000 (16:25 +0000)]
fix example code that trips up doxygen

git-svn-id: https://svn.dealii.org/trunk@32393 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoMinor adjustments for style and in hopes of getting MS VC++ to like the file better...
bangerth [Mon, 3 Feb 2014 15:40:53 +0000 (15:40 +0000)]
Minor adjustments for style and in hopes of getting MS VC++ to like the file better than it used to.

git-svn-id: https://svn.dealii.org/trunk@32391 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAvoid what I believe is an unnecessary '::template ' in hopes that it makes MS VC...
bangerth [Mon, 3 Feb 2014 14:58:05 +0000 (14:58 +0000)]
Avoid what I believe is an unnecessary '::template ' in hopes that it makes MS VC++ happier.

git-svn-id: https://svn.dealii.org/trunk@32389 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoformatting
heister [Mon, 3 Feb 2014 14:50:28 +0000 (14:50 +0000)]
formatting

git-svn-id: https://svn.dealii.org/trunk@32388 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoadd publication
heister [Mon, 3 Feb 2014 14:49:44 +0000 (14:49 +0000)]
add publication

git-svn-id: https://svn.dealii.org/trunk@32387 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoRefill comments
kronbichler [Mon, 3 Feb 2014 14:41:54 +0000 (14:41 +0000)]
Refill comments

git-svn-id: https://svn.dealii.org/trunk@32386 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoIntroduce mmult and second factorization routine.
kronbichler [Mon, 3 Feb 2014 14:32:10 +0000 (14:32 +0000)]
Introduce mmult and second factorization routine.

git-svn-id: https://svn.dealii.org/trunk@32385 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoDataOutBase no longer is a class.
bangerth [Mon, 3 Feb 2014 14:24:09 +0000 (14:24 +0000)]
DataOutBase no longer is a class.

git-svn-id: https://svn.dealii.org/trunk@32384 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoadd weighted mass matrix
kanschat [Sun, 2 Feb 2014 22:41:39 +0000 (22:41 +0000)]
add weighted mass matrix

git-svn-id: https://svn.dealii.org/trunk@32381 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoadd functions for clearing and initializing an MGTransferPrebuilt object
kanschat [Sun, 2 Feb 2014 22:41:20 +0000 (22:41 +0000)]
add functions for clearing and initializing an MGTransferPrebuilt object

git-svn-id: https://svn.dealii.org/trunk@32380 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoNewton::threshold() was missing
kanschat [Sun, 2 Feb 2014 22:40:45 +0000 (22:40 +0000)]
Newton::threshold() was missing

git-svn-id: https://svn.dealii.org/trunk@32379 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoHelp MS VC++ recognize which template function to take.
bangerth [Sun, 2 Feb 2014 21:53:39 +0000 (21:53 +0000)]
Help MS VC++ recognize which template function to take.

git-svn-id: https://svn.dealii.org/trunk@32378 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoComplete specify namespace for a symbol to help MS VC++.
bangerth [Sun, 2 Feb 2014 20:53:38 +0000 (20:53 +0000)]
Complete specify namespace for a symbol to help MS VC++.

git-svn-id: https://svn.dealii.org/trunk@32377 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAddress a few follow-up issues with the previous patches.
bangerth [Sun, 2 Feb 2014 19:37:02 +0000 (19:37 +0000)]
Address a few follow-up issues with the previous patches.

git-svn-id: https://svn.dealii.org/trunk@32376 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoMore conversions from class to namespace DataOutBase. Reindent these files.
bangerth [Sun, 2 Feb 2014 19:05:08 +0000 (19:05 +0000)]
More conversions from class to namespace DataOutBase. Reindent these files.

git-svn-id: https://svn.dealii.org/trunk@32375 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoBugfixes: Make compilation of bundled libraries work again
maier [Sun, 2 Feb 2014 11:39:36 +0000 (11:39 +0000)]
Bugfixes: Make compilation of bundled libraries work again

git-svn-id: https://svn.dealii.org/trunk@32374 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoI have no idea where this cache invalidation comes from - disable for now
maier [Sun, 2 Feb 2014 00:31:01 +0000 (00:31 +0000)]
I have no idea where this cache invalidation comes from - disable for now

git-svn-id: https://svn.dealii.org/trunk@32373 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Bugfix: Get the caching right in FindPETSC.cmake and
maier [Sun, 2 Feb 2014 00:10:11 +0000 (00:10 +0000)]
CMake: Bugfix: Get the caching right in FindPETSC.cmake and
FindTRILINOS.cmake

git-svn-id: https://svn.dealii.org/trunk@32372 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoWell, well. Also adjust the project configuration...
maier [Sat, 1 Feb 2014 21:58:11 +0000 (21:58 +0000)]
Well, well. Also adjust the project configuration...

git-svn-id: https://svn.dealii.org/trunk@32371 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Break everything (tm)
maier [Sat, 1 Feb 2014 21:53:31 +0000 (21:53 +0000)]
CMake: Break everything (tm)

 - Provide a quick sanity check to test the final link interface.

git-svn-id: https://svn.dealii.org/trunk@32370 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Break everything (tm)
maier [Sat, 1 Feb 2014 21:53:29 +0000 (21:53 +0000)]
CMake: Break everything (tm)

- Do not record full path of system libraries and use reduced link line
  instead.

git-svn-id: https://svn.dealii.org/trunk@32369 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Break everything (tm).
maier [Sat, 1 Feb 2014 21:53:24 +0000 (21:53 +0000)]
CMake: Break everything (tm).

- Redesign complete feature configuration process

git-svn-id: https://svn.dealii.org/trunk@32368 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoRemove the awkward private inheritance from DataOutBase to DataOutInterface that...
bangerth [Sat, 1 Feb 2014 13:18:44 +0000 (13:18 +0000)]
Remove the awkward private inheritance from DataOutBase to DataOutInterface that has tripped up virtually every compiler we have ever tried. Instead, make DataOutBase a namespace.

git-svn-id: https://svn.dealii.org/trunk@32367 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoMark new functions in header file as inline
kronbichler [Sat, 1 Feb 2014 08:16:52 +0000 (08:16 +0000)]
Mark new functions in header file as inline

git-svn-id: https://svn.dealii.org/trunk@32365 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agonew tests for ParameterHandler print_parameters_section
steigemann [Sat, 1 Feb 2014 08:04:39 +0000 (08:04 +0000)]
new tests for ParameterHandler print_parameters_section

git-svn-id: https://svn.dealii.org/trunk@32364 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoadded a new flag to ParameterHandler::print_parameters_section for printing all highe...
steigemann [Sat, 1 Feb 2014 07:57:30 +0000 (07:57 +0000)]
added a new flag to ParameterHandler::print_parameters_section for printing all higher subsection elements needed for XML output

git-svn-id: https://svn.dealii.org/trunk@32363 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoMake compile again
kronbichler [Fri, 31 Jan 2014 20:07:22 +0000 (20:07 +0000)]
Make compile again

git-svn-id: https://svn.dealii.org/trunk@32362 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd tests
kronbichler [Fri, 31 Jan 2014 20:03:54 +0000 (20:03 +0000)]
Add tests

git-svn-id: https://svn.dealii.org/trunk@32361 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoMake all instances of a template a friend function, in hopes to make
bangerth [Fri, 31 Jan 2014 19:44:13 +0000 (19:44 +0000)]
Make all instances of a template a friend function, in hopes to make
MS VC++ happy.

git-svn-id: https://svn.dealii.org/trunk@32360 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoBetter way for specifying deal.II namespace.
kronbichler [Fri, 31 Jan 2014 19:05:03 +0000 (19:05 +0000)]
Better way for specifying deal.II namespace.

git-svn-id: https://svn.dealii.org/trunk@32359 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd similar interface for copying from a Trilinos MPI vector as for Petsc.
kronbichler [Fri, 31 Jan 2014 19:03:37 +0000 (19:03 +0000)]
Add similar interface for copying from a Trilinos MPI vector as for Petsc.

git-svn-id: https://svn.dealii.org/trunk@32358 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd test
kronbichler [Fri, 31 Jan 2014 14:11:14 +0000 (14:11 +0000)]
Add test

git-svn-id: https://svn.dealii.org/trunk@32357 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoavoid fmin with unsigned int because it is not defined for ints before c++11
heister [Fri, 31 Jan 2014 14:05:39 +0000 (14:05 +0000)]
avoid fmin with unsigned int because it is not defined for ints before c++11

git-svn-id: https://svn.dealii.org/trunk@32356 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoPatch by Ben Thompson: copy petsc vector to deal.II parallel distributed vector
kronbichler [Fri, 31 Jan 2014 13:24:30 +0000 (13:24 +0000)]
Patch by Ben Thompson: copy petsc vector to deal.II parallel distributed vector

git-svn-id: https://svn.dealii.org/trunk@32355 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoPrior to C++11, fmax is a C99 function and not in namespace std
kronbichler [Fri, 31 Jan 2014 07:33:59 +0000 (07:33 +0000)]
Prior to C++11, fmax is a C99 function and not in namespace std

git-svn-id: https://svn.dealii.org/trunk@32354 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoPrior to C++11, fmin is a C99 function and not in namespace std
kronbichler [Fri, 31 Jan 2014 07:20:16 +0000 (07:20 +0000)]
Prior to C++11, fmin is a C99 function and not in namespace std

git-svn-id: https://svn.dealii.org/trunk@32353 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd tests for bug report #182. At least the _28 test doesn't currently work and I...
bangerth [Fri, 31 Jan 2014 03:34:47 +0000 (03:34 +0000)]
Add tests for bug report #182. At least the _28 test doesn't currently work and I will get to it over the weekend at the latest.

git-svn-id: https://svn.dealii.org/trunk@32352 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd a const in sparse_matrix.h and an include in sparsity_tools.cc to help Visual...
turcksin [Fri, 31 Jan 2014 01:32:15 +0000 (01:32 +0000)]
Add a const in sparse_matrix.h and an include in sparsity_tools.cc to help Visual Studio.

git-svn-id: https://svn.dealii.org/trunk@32351 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd several typenames and change min to fmin, max to fmax to help Visual Studio.
turcksin [Fri, 31 Jan 2014 00:04:32 +0000 (00:04 +0000)]
Add several typenames and change min to fmin, max to fmax to help Visual Studio.

git-svn-id: https://svn.dealii.org/trunk@32350 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoLook through the documentation at a couple of places.
bangerth [Thu, 30 Jan 2014 23:08:09 +0000 (23:08 +0000)]
Look through the documentation at a couple of places.

git-svn-id: https://svn.dealii.org/trunk@32349 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoLink to another paper on best practices, as well as the video lectures.
bangerth [Thu, 30 Jan 2014 21:53:29 +0000 (21:53 +0000)]
Link to another paper on best practices, as well as the video lectures.

git-svn-id: https://svn.dealii.org/trunk@32348 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd a few statements on running stuff in parallel with MPI.
bangerth [Thu, 30 Jan 2014 17:23:49 +0000 (17:23 +0000)]
Add a few statements on running stuff in parallel with MPI.

git-svn-id: https://svn.dealii.org/trunk@32347 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoInitialize a variable and explain it.
bangerth [Wed, 29 Jan 2014 16:38:51 +0000 (16:38 +0000)]
Initialize a variable and explain it.

git-svn-id: https://svn.dealii.org/trunk@32345 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdd last name of contributor Mihai.
bangerth [Wed, 29 Jan 2014 12:53:51 +0000 (12:53 +0000)]
Add last name of contributor Mihai.

git-svn-id: https://svn.dealii.org/trunk@32344 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Start refactoring of REGISTER_FEATURE
maier [Tue, 28 Jan 2014 19:01:32 +0000 (19:01 +0000)]
CMake: Start refactoring of REGISTER_FEATURE

git-svn-id: https://svn.dealii.org/trunk@32339 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Refactor detailed and summary log creation
maier [Tue, 28 Jan 2014 19:01:29 +0000 (19:01 +0000)]
CMake: Refactor detailed and summary log creation

git-svn-id: https://svn.dealii.org/trunk@32338 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agostep-1: add some text output to the screen
heister [Tue, 28 Jan 2014 19:00:20 +0000 (19:00 +0000)]
step-1: add some text output to the screen

git-svn-id: https://svn.dealii.org/trunk@32337 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Refactor list deduplication into a macro
maier [Tue, 28 Jan 2014 18:58:22 +0000 (18:58 +0000)]
CMake: Refactor list deduplication into a macro

git-svn-id: https://svn.dealii.org/trunk@32336 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoTestsuite: Bugfix: Do not copy CMakeCache.txt and CMakeFiles for build tests
maier [Tue, 28 Jan 2014 13:29:02 +0000 (13:29 +0000)]
Testsuite: Bugfix: Do not copy CMakeCache.txt and CMakeFiles for build tests

git-svn-id: https://svn.dealii.org/trunk@32332 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix indentation
felix.gruber [Tue, 28 Jan 2014 09:35:21 +0000 (09:35 +0000)]
fix indentation

git-svn-id: https://svn.dealii.org/trunk@32330 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix typo
heister [Mon, 27 Jan 2014 20:16:24 +0000 (20:16 +0000)]
fix typo

git-svn-id: https://svn.dealii.org/trunk@32328 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAvoid an if() in optimized mode by writing the Assert in a more clever way.
bangerth [Mon, 27 Jan 2014 16:42:35 +0000 (16:42 +0000)]
Avoid an if() in optimized mode by writing the Assert in a more clever way.

git-svn-id: https://svn.dealii.org/trunk@32327 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAlso list where results show up.
bangerth [Mon, 27 Jan 2014 03:15:11 +0000 (03:15 +0000)]
Also list where results show up.

git-svn-id: https://svn.dealii.org/trunk@32324 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoFix obvious oversights in the previous commit...
bangerth [Mon, 27 Jan 2014 02:53:03 +0000 (02:53 +0000)]
Fix obvious oversights in the previous commit...

git-svn-id: https://svn.dealii.org/trunk@32323 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoDocument running the testsuite for coverage information.
bangerth [Mon, 27 Jan 2014 00:11:56 +0000 (00:11 +0000)]
Document running the testsuite for coverage information.

git-svn-id: https://svn.dealii.org/trunk@32322 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoProvide a couple of constructors that are never called but for which
bangerth [Sun, 26 Jan 2014 23:58:30 +0000 (23:58 +0000)]
Provide a couple of constructors that are never called but for which
we apparently need definitions when running the testsuite for
coverage.

git-svn-id: https://svn.dealii.org/trunk@32321 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoleave a note on how to start step-32
heister [Sun, 26 Jan 2014 23:41:36 +0000 (23:41 +0000)]
leave a note on how to start step-32

git-svn-id: https://svn.dealii.org/trunk@32320 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoDisallow calling certain functions that have to do with active_fe_index on cells...
bangerth [Sun, 26 Jan 2014 19:36:28 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).

git-svn-id: https://svn.dealii.org/trunk@32318 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoDisallow calling certain functions that have to do with active_fe_index on cells...
bangerth [Sun, 26 Jan 2014 19:36:10 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).

git-svn-id: https://svn.dealii.org/trunk@32317 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoFix a forgotten case with FENothing (thanks to a testcase by Krzysztof Bzowski).
bangerth [Sun, 26 Jan 2014 18:47:48 +0000 (18:47 +0000)]
Fix a forgotten case with FENothing (thanks to a testcase by Krzysztof Bzowski).

git-svn-id: https://svn.dealii.org/trunk@32316 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Bugfix: Strip leading and trailing whitespace from linker flags in
maier [Sun, 26 Jan 2014 14:55:30 +0000 (14:55 +0000)]
CMake: Bugfix: Strip leading and trailing whitespace from linker flags in
order to not confuse cmake-2.8.8

git-svn-id: https://svn.dealii.org/trunk@32315 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Improve error message for invalid user provided CXX and LD flags
maier [Sun, 26 Jan 2014 11:44:31 +0000 (11:44 +0000)]
CMake: Improve error message for invalid user provided CXX and LD flags

git-svn-id: https://svn.dealii.org/trunk@32314 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAugment documentation.
bangerth [Sat, 25 Jan 2014 14:43:00 +0000 (14:43 +0000)]
Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@32313 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoMore cleanups in SolutionTransfer.
bangerth [Sat, 25 Jan 2014 13:20:09 +0000 (13:20 +0000)]
More cleanups in SolutionTransfer.

git-svn-id: https://svn.dealii.org/trunk@32312 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Bugfix: Set a compiler option for the correct build type
maier [Sat, 25 Jan 2014 09:53:35 +0000 (09:53 +0000)]
CMake: Bugfix: Set a compiler option for the correct build type

git-svn-id: https://svn.dealii.org/trunk@32311 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoClean up a good amount of code. In particular, do not try to access fe_indices of...
bangerth [Sat, 25 Jan 2014 04:11:46 +0000 (04:11 +0000)]
Clean up a good amount of code. In particular, do not try to access fe_indices of cells that are not active, since no finite element space is associated with them.

git-svn-id: https://svn.dealii.org/trunk@32310 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAvoid directly accessing the active_fe_index of a cell that is at this
bangerth [Sat, 25 Jan 2014 04:09:13 +0000 (04:09 +0000)]
Avoid directly accessing the active_fe_index of a cell that is at this
point no longer active.

git-svn-id: https://svn.dealii.org/trunk@32309 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoRemove a hunk of code that was forgotten in r32297.
bangerth [Sat, 25 Jan 2014 02:08:49 +0000 (02:08 +0000)]
Remove a hunk of code that was forgotten in r32297.

git-svn-id: https://svn.dealii.org/trunk@32308 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoadd script to check doxygen formatting
heister [Fri, 24 Jan 2014 23:18:58 +0000 (23:18 +0000)]
add script to check doxygen formatting

git-svn-id: https://svn.dealii.org/trunk@32307 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoput deprecated functions into own doxygen group, fix doxygen formatting
heister [Fri, 24 Jan 2014 21:06:34 +0000 (21:06 +0000)]
put deprecated functions into own doxygen group, fix doxygen formatting

git-svn-id: https://svn.dealii.org/trunk@32306 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix doxygen grouping tags
heister [Fri, 24 Jan 2014 21:05:43 +0000 (21:05 +0000)]
fix doxygen grouping tags

git-svn-id: https://svn.dealii.org/trunk@32305 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoremove unused variable in quicktest
heister [Fri, 24 Jan 2014 21:01:03 +0000 (21:01 +0000)]
remove unused variable in quicktest

git-svn-id: https://svn.dealii.org/trunk@32304 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix quick_test
heister [Fri, 24 Jan 2014 21:00:30 +0000 (21:00 +0000)]
fix quick_test

git-svn-id: https://svn.dealii.org/trunk@32303 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoFix use of freed memory: Change when to reset the vector
kronbichler [Fri, 24 Jan 2014 16:52:51 +0000 (16:52 +0000)]
Fix use of freed memory: Change when to reset the vector

git-svn-id: https://svn.dealii.org/trunk@32300 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix invalid memory access in gridin::read_vtk
heister [Fri, 24 Jan 2014 16:05:50 +0000 (16:05 +0000)]
fix invalid memory access in gridin::read_vtk

git-svn-id: https://svn.dealii.org/trunk@32299 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoimprove error checks and comments for parallel::distributed::Triangulation::load...
heister [Fri, 24 Jan 2014 15:47:40 +0000 (15:47 +0000)]
improve error checks and comments for parallel::distributed::Triangulation::load/save

git-svn-id: https://svn.dealii.org/trunk@32298 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoDisallow calling DoFAccessor::set_active_fe_index on non-active cells.
bangerth [Fri, 24 Jan 2014 15:33:23 +0000 (15:33 +0000)]
Disallow calling DoFAccessor::set_active_fe_index on non-active cells.

git-svn-id: https://svn.dealii.org/trunk@32297 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdjust a few tests to not call set_active_fe_index() on non-active cells.
bangerth [Fri, 24 Jan 2014 15:33:11 +0000 (15:33 +0000)]
Adjust a few tests to not call set_active_fe_index() on non-active cells.

git-svn-id: https://svn.dealii.org/trunk@32296 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoMention Martin's change from a couple of days ago.
bangerth [Fri, 24 Jan 2014 13:00:43 +0000 (13:00 +0000)]
Mention Martin's change from a couple of days ago.

git-svn-id: https://svn.dealii.org/trunk@32295 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Cleanup: Remove obsolete macro, unify naming of internal macros
maier [Fri, 24 Jan 2014 11:25:42 +0000 (11:25 +0000)]
CMake: Cleanup: Remove obsolete macro, unify naming of internal macros

git-svn-id: https://svn.dealii.org/trunk@32294 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdjust test output
kronbichler [Fri, 24 Jan 2014 08:11:33 +0000 (08:11 +0000)]
Adjust test output

git-svn-id: https://svn.dealii.org/trunk@32293 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoFix test case with 64 bits
kronbichler [Thu, 23 Jan 2014 21:22:40 +0000 (21:22 +0000)]
Fix test case with 64 bits

git-svn-id: https://svn.dealii.org/trunk@32292 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoFixed typo in step-2 tutorial program.
ryan.grove [Thu, 23 Jan 2014 19:18:05 +0000 (19:18 +0000)]
Fixed typo in step-2 tutorial program.

git-svn-id: https://svn.dealii.org/trunk@32291 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoCMake: Bugfix: Clear compile variables prior to populating
maier [Thu, 23 Jan 2014 18:01:47 +0000 (18:01 +0000)]
CMake: Bugfix: Clear compile variables prior to populating

git-svn-id: https://svn.dealii.org/trunk@32290 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix invalid memory access caused by undefined order of construction of static members...
heister [Thu, 23 Jan 2014 17:26:42 +0000 (17:26 +0000)]
fix invalid memory access caused by undefined order of construction of static members (found with ASAN)

git-svn-id: https://svn.dealii.org/trunk@32289 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoSome more from Winnifred.
bangerth [Wed, 22 Jan 2014 21:48:05 +0000 (21:48 +0000)]
Some more from Winnifred.

git-svn-id: https://svn.dealii.org/trunk@32287 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoPatch by Martin Steigemann: Handle the case of zero error indicators better when...
bangerth [Wed, 22 Jan 2014 19:13:57 +0000 (19:13 +0000)]
Patch by Martin Steigemann: Handle the case of zero error indicators better when finding the threshold for mesh refinement.

git-svn-id: https://svn.dealii.org/trunk@32286 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agostep-4: write constants as doubles
heister [Wed, 22 Jan 2014 15:51:32 +0000 (15:51 +0000)]
step-4: write constants as doubles

git-svn-id: https://svn.dealii.org/trunk@32285 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoRemove obsolete scripts
maier [Wed, 22 Jan 2014 12:16:50 +0000 (12:16 +0000)]
Remove obsolete scripts

git-svn-id: https://svn.dealii.org/trunk@32284 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoupdate p4est instructions, remove some outdated stuff
heister [Tue, 21 Jan 2014 22:10:31 +0000 (22:10 +0000)]
update p4est instructions, remove some outdated stuff

git-svn-id: https://svn.dealii.org/trunk@32283 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAdjust test output
kronbichler [Tue, 21 Jan 2014 21:08:38 +0000 (21:08 +0000)]
Adjust test output

git-svn-id: https://svn.dealii.org/trunk@32282 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoDo not set active_fe_index values on non-active cells.
bangerth [Tue, 21 Jan 2014 17:24:10 +0000 (17:24 +0000)]
Do not set active_fe_index values on non-active cells.

git-svn-id: https://svn.dealii.org/trunk@32281 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix broken PETScWrappers::MPI::Vector::print() in parallel
heister [Tue, 21 Jan 2014 15:44:16 +0000 (15:44 +0000)]
fix broken PETScWrappers::MPI::Vector::print() in parallel

git-svn-id: https://svn.dealii.org/trunk@32280 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agofix another place where we should use MPI_Allreduce instead of MPI_Reduce
heister [Tue, 21 Jan 2014 14:44:40 +0000 (14:44 +0000)]
fix another place where we should use MPI_Allreduce instead of MPI_Reduce

git-svn-id: https://svn.dealii.org/trunk@32279 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoTest extract_row_copy, fix two bugs
kronbichler [Tue, 21 Jan 2014 08:30:25 +0000 (08:30 +0000)]
Test extract_row_copy, fix two bugs

git-svn-id: https://svn.dealii.org/trunk@32276 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoFix test
kronbichler [Tue, 21 Jan 2014 07:38:45 +0000 (07:38 +0000)]
Fix test

git-svn-id: https://svn.dealii.org/trunk@32275 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoImprove error message.
bangerth [Tue, 21 Jan 2014 07:34:12 +0000 (07:34 +0000)]
Improve error message.

git-svn-id: https://svn.dealii.org/trunk@32274 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoClear active_fe_index flags on non-active cells since they have no meaning.
bangerth [Tue, 21 Jan 2014 06:49:27 +0000 (06:49 +0000)]
Clear active_fe_index flags on non-active cells since they have no meaning.

git-svn-id: https://svn.dealii.org/trunk@32273 0785d39b-7218-0410-832d-ea1e28bc413d

10 years agoAnother test.
bangerth [Tue, 21 Jan 2014 06:44:34 +0000 (06:44 +0000)]
Another test.

git-svn-id: https://svn.dealii.org/trunk@32272 0785d39b-7218-0410-832d-ea1e28bc413d


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