https://gitweb.dealii.org/

Wolfgang Bangerth [Fri, 5 Feb 2010 04:07:25 +0000 (04:07 +0000)]

Bring up to standard with regard to multigrid on adaptive meshes.

git-svn-id: https://svn.dealii.org/trunk@20501 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 5 Feb 2010 01:46:28 +0000 (01:46 +0000)]

Add necessary output files.

git-svn-id: https://svn.dealii.org/trunk@20500 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 5 Feb 2010 00:07:55 +0000 (00:07 +0000)]

Adjust test results to also make them work with gcc 4.1.

git-svn-id: https://svn.dealii.org/trunk@20499 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 4 Feb 2010 16:25:37 +0000 (16:25 +0000)]

Use a shortcut to the vector in copy_to_mg.

git-svn-id: https://svn.dealii.org/trunk@20498 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 4 Feb 2010 15:13:00 +0000 (15:13 +0000)]

Set matrix size by std::size_t, not unsigned int, since on very large matrices with more than four billion nonzeros we might end up in setting the wrong matrix size.

git-svn-id: https://svn.dealii.org/trunk@20497 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 4 Feb 2010 15:11:54 +0000 (15:11 +0000)]

Express memory consumption in std::size_t since this can be quite large numbers.

git-svn-id: https://svn.dealii.org/trunk@20496 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 4 Feb 2010 15:06:04 +0000 (15:06 +0000)]

Allow even float matrices.

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Martin Kronbichler [Thu, 4 Feb 2010 15:04:13 +0000 (15:04 +0000)]

Use vector<shared_ptr<const vector> > instead of plain pointers in order to correctly free memory.

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Martin Kronbichler [Thu, 4 Feb 2010 11:24:09 +0000 (11:24 +0000)]

Simplify generation of copy_indices: do this from a std::vector that stores the mapping level_indices <> global_indices, which avoids sorting indices and compressing out duplicates.

git-svn-id: https://svn.dealii.org/trunk@20493 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 4 Feb 2010 11:22:51 +0000 (11:22 +0000)]

Simplify smoother usage a little bit. Avoid setting elements in vvectors that will be overwritten anyway.

git-svn-id: https://svn.dealii.org/trunk@20492 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 4 Feb 2010 11:21:42 +0000 (11:21 +0000)]

Update in one comment. Remove trailing whitespace.

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Martin Kronbichler [Thu, 4 Feb 2010 08:08:18 +0000 (08:08 +0000)]

Undo free of static variable.

git-svn-id: https://svn.dealii.org/trunk@20490 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 3 Feb 2010 15:59:43 +0000 (15:59 +0000)]

Fix a memory leak.

git-svn-id: https://svn.dealii.org/trunk@20489 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 3 Feb 2010 14:35:01 +0000 (14:35 +0000)]

Two more.

git-svn-id: https://svn.dealii.org/trunk@20488 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 3 Feb 2010 00:18:22 +0000 (00:18 +0000)]

Fix markup.

git-svn-id: https://svn.dealii.org/trunk@20487 0785d39b-7218-0410-832d-ea1e28bc413d

Corrected accent and grammer errors

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Martin Kronbichler [Mon, 1 Feb 2010 15:55:59 +0000 (15:55 +0000)]

Use std::vector<std::pair<uint,uint> > instead of std::map<uint,uint> for describing the transfer from and to multigrid. This is considerably faster. Also improve imposition of boundary conditions in mg_transfer_prebuilt

git-svn-id: https://svn.dealii.org/trunk@20485 0785d39b-7218-0410-832d-ea1e28bc413d

Added paper to publication record

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Martin Kronbichler [Mon, 1 Feb 2010 12:46:10 +0000 (12:46 +0000)]

Fix compile problem.

git-svn-id: https://svn.dealii.org/trunk@20482 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Mon, 1 Feb 2010 12:41:43 +0000 (12:41 +0000)]

Use new features introduced in branch_distributed_grids even in mainline.

git-svn-id: https://svn.dealii.org/trunk@20481 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 29 Jan 2010 17:19:21 +0000 (17:19 +0000)]

Check in a long-forgotten change.

git-svn-id: https://svn.dealii.org/trunk@20476 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 29 Jan 2010 17:05:57 +0000 (17:05 +0000)]

Ignore errors when making nofail as part of report.

git-svn-id: https://svn.dealii.org/trunk@20475 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 29 Jan 2010 15:53:42 +0000 (15:53 +0000)]

On machines with lots of processors, one or two long-running tests in
subdirectories can stop the progress of 'make report'. To prevent this, first
compile and run all tests once in parallel across all directories, and then
just do the report sequentially through the directories.

git-svn-id: https://svn.dealii.org/trunk@20474 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 28 Jan 2010 23:10:38 +0000 (23:10 +0000)]

Update some more tests.

git-svn-id: https://svn.dealii.org/trunk@20473 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 28 Jan 2010 21:10:31 +0000 (21:10 +0000)]

Add to list.

git-svn-id: https://svn.dealii.org/trunk@20472 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 28 Jan 2010 21:03:32 +0000 (21:03 +0000)]

Update a bunch of output files.

git-svn-id: https://svn.dealii.org/trunk@20471 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 28 Jan 2010 17:10:07 +0000 (17:10 +0000)]

Use numbers::PI instead of hard coding macros.

git-svn-id: https://svn.dealii.org/trunk@20470 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 28 Jan 2010 17:08:54 +0000 (17:08 +0000)]

Fix another race condition.

git-svn-id: https://svn.dealii.org/trunk@20469 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 28 Jan 2010 17:04:05 +0000 (17:04 +0000)]

Fix the same bug in PolynomialsABF.

git-svn-id: https://svn.dealii.org/trunk@20468 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 28 Jan 2010 16:28:25 +0000 (16:28 +0000)]

Fix a race condition in PolynomialsBDM.

git-svn-id: https://svn.dealii.org/trunk@20467 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 27 Jan 2010 20:52:31 +0000 (20:52 +0000)]

add

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Wolfgang Bangerth [Wed, 27 Jan 2010 20:44:45 +0000 (20:44 +0000)]

Treat all directories in /examples with doxygen that have a doc/ subdirectory.

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Katharina Kormann [Wed, 27 Jan 2010 19:22:06 +0000 (19:22 +0000)]

Added tests for FE_Q with non-equidistant support points.

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Katharina Kormann [Wed, 27 Jan 2010 19:20:32 +0000 (19:20 +0000)]

Correct error in restriction matrix for FE_Q defined by quadrature formula.

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Martin Kronbichler [Wed, 27 Jan 2010 14:53:14 +0000 (14:53 +0000)]

Ignore also *d2 output data as created in this program.

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Wolfgang Bangerth [Wed, 27 Jan 2010 14:24:54 +0000 (14:24 +0000)]

Michael Geiger's diploma thesis.

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Martin Kronbichler [Wed, 27 Jan 2010 13:22:36 +0000 (13:22 +0000)]

Add function that can extract diagonal subblock from ConstraintMatrix.

git-svn-id: https://svn.dealii.org/trunk@20453 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Mon, 25 Jan 2010 21:31:12 +0000 (21:31 +0000)]

step 39 works again

git-svn-id: https://svn.dealii.org/trunk@20451 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Mon, 25 Jan 2010 16:38:19 +0000 (16:38 +0000)]

step 39 compiles, but crashes in estimate, because hessians are not computed

git-svn-id: https://svn.dealii.org/trunk@20447 0785d39b-7218-0410-832d-ea1e28bc413d

Missed one output file in tests/petsc

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Guido Kanschat [Mon, 25 Jan 2010 15:06:59 +0000 (15:06 +0000)]

remove debug output

git-svn-id: https://svn.dealii.org/trunk@20444 0785d39b-7218-0410-832d-ea1e28bc413d

tests/petsc: more cleanup

git-svn-id: https://svn.dealii.org/trunk@20440 0785d39b-7218-0410-832d-ea1e28bc413d

work on petsc unit tests, make them pass on my machine too

git-svn-id: https://svn.dealii.org/trunk@20439 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:46:45 +0000 (00:46 +0000)]

Better tolerances.

git-svn-id: https://svn.dealii.org/trunk@20438 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:44:45 +0000 (00:44 +0000)]

Update.

git-svn-id: https://svn.dealii.org/trunk@20437 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:40:04 +0000 (00:40 +0000)]

Update test results.

git-svn-id: https://svn.dealii.org/trunk@20436 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:38:43 +0000 (00:38 +0000)]

Destroy the memory pool of PETSc vectors before we end PETSc itself. We'll get memory corruption problems otherwise.

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:35:06 +0000 (00:35 +0000)]

Update test results.

git-svn-id: https://svn.dealii.org/trunk@20434 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:26:57 +0000 (00:26 +0000)]

Update.

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:20:35 +0000 (00:20 +0000)]

Update results.

git-svn-id: https://svn.dealii.org/trunk@20432 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:15:56 +0000 (00:15 +0000)]

Fix output.

git-svn-id: https://svn.dealii.org/trunk@20431 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:15:38 +0000 (00:15 +0000)]

Make it work.

git-svn-id: https://svn.dealii.org/trunk@20430 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 25 Jan 2010 00:05:22 +0000 (00:05 +0000)]

Make at least compile.

git-svn-id: https://svn.dealii.org/trunk@20429 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 24 Jan 2010 23:43:31 +0000 (23:43 +0000)]

Fix a recently introduced bug where we started counting from too high.

git-svn-id: https://svn.dealii.org/trunk@20428 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 23 Jan 2010 03:49:58 +0000 (03:49 +0000)]

When doing 'make clean', also remove *.inst files. Not doing so can lead to really awkward problems when you ^C the program that creates the *.inst files -- they end up empty, but have a newer date than the .inst.in file. Compiling everything then leads to missing symbols, but doing 'make clean ; make all' doesn't help any because the .inst files are not regenerated.

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Wolfgang Bangerth [Wed, 20 Jan 2010 20:10:21 +0000 (20:10 +0000)]

Rename bdry->boundary, ngbr->neighbor.

git-svn-id: https://svn.dealii.org/trunk@20413 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Jan 2010 20:04:00 +0000 (20:04 +0000)]

Update documentation.

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Wolfgang Bangerth [Wed, 20 Jan 2010 19:59:05 +0000 (19:59 +0000)]

Get rid of the IntegratingAssembler class

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Wolfgang Bangerth [Wed, 20 Jan 2010 14:51:53 +0000 (14:51 +0000)]

First step in getting rid of the AssemblingIntegrator class and splitting its functionality into two parts.

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Wolfgang Bangerth [Wed, 20 Jan 2010 14:37:52 +0000 (14:37 +0000)]

Minor cleanup, documentation fixes.

git-svn-id: https://svn.dealii.org/trunk@20401 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Jan 2010 13:35:12 +0000 (13:35 +0000)]

Get rid again of the DGIntegrator class and re-merge everything into
the main class.

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Wolfgang Bangerth [Wed, 20 Jan 2010 13:19:26 +0000 (13:19 +0000)]

Use const references instead of copies.

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Wolfgang Bangerth [Wed, 20 Jan 2010 13:17:19 +0000 (13:17 +0000)]

Use function<> objects rather than hard-coded names to represent operations.

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Wolfgang Bangerth [Wed, 20 Jan 2010 13:17:03 +0000 (13:17 +0000)]

Use function<> objects rather than hard-coded names to represent operations.

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Wolfgang Bangerth [Wed, 20 Jan 2010 13:01:57 +0000 (13:01 +0000)]

Remove unused local variable.

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Wolfgang Bangerth [Wed, 20 Jan 2010 13:01:27 +0000 (13:01 +0000)]

Simplify code slightly.

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Wolfgang Bangerth [Wed, 20 Jan 2010 01:15:03 +0000 (01:15 +0000)]

Minor simplification.

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Wolfgang Bangerth [Tue, 19 Jan 2010 23:36:24 +0000 (23:36 +0000)]

Make function more generic by taking function<> objects rather than
member functions with fixed name.

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Wolfgang Bangerth [Tue, 19 Jan 2010 16:53:12 +0000 (16:53 +0000)]

Also encode the library path through -rpath when linking with static libs, since we also link with the TBB and that one is always shared.

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Wolfgang Bangerth [Sun, 17 Jan 2010 22:50:54 +0000 (22:50 +0000)]

Extract integral parameters with get_integer().

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Wolfgang Bangerth [Fri, 15 Jan 2010 19:11:49 +0000 (19:11 +0000)]

Make compile again. Currently fails, however.

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Wolfgang Bangerth [Fri, 15 Jan 2010 19:05:37 +0000 (19:05 +0000)]

Make compile again. Currently fails, however.

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Wolfgang Bangerth [Fri, 15 Jan 2010 19:02:30 +0000 (19:02 +0000)]

Make compile again.

git-svn-id: https://svn.dealii.org/trunk@20377 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 15 Jan 2010 19:01:23 +0000 (19:01 +0000)]

Make compile again.

git-svn-id: https://svn.dealii.org/trunk@20376 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 15 Jan 2010 18:44:35 +0000 (18:44 +0000)]

Get closer to compiling again.

git-svn-id: https://svn.dealii.org/trunk@20375 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 15 Jan 2010 18:38:50 +0000 (18:38 +0000)]

Add missing include file.

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Wolfgang Bangerth [Fri, 15 Jan 2010 18:38:08 +0000 (18:38 +0000)]

Add a few missing include files.

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Wolfgang Bangerth [Fri, 15 Jan 2010 15:01:26 +0000 (15:01 +0000)]

Move event.{cc,h} into base.

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Wolfgang Bangerth [Fri, 15 Jan 2010 14:41:52 +0000 (14:41 +0000)]

Rename .cc file to match .h file.

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Martin Kronbichler [Fri, 15 Jan 2010 12:58:40 +0000 (12:58 +0000)]

Slight cleanup in SSOR preconditioner.

git-svn-id: https://svn.dealii.org/trunk@20369 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Fri, 15 Jan 2010 12:43:44 +0000 (12:43 +0000)]

fix Newton stepsize output

git-svn-id: https://svn.dealii.org/trunk@20368 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Fri, 15 Jan 2010 12:34:47 +0000 (12:34 +0000)]

some fixes

git-svn-id: https://svn.dealii.org/trunk@20367 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 13 Jan 2010 17:55:08 +0000 (17:55 +0000)]

Fix typo.

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Martin Kronbichler [Wed, 13 Jan 2010 16:29:42 +0000 (16:29 +0000)]

Forgot to declare function as inline.

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Martin Kronbichler [Wed, 13 Jan 2010 16:27:48 +0000 (16:27 +0000)]

One more fix when PETSc is used.

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Martin Kronbichler [Wed, 13 Jan 2010 16:18:52 +0000 (16:18 +0000)]

Fix PETSc error.

git-svn-id: https://svn.dealii.org/trunk@20363 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 13 Jan 2010 15:57:21 +0000 (15:57 +0000)]

Add a print function for Trilinos block vector.

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Martin Kronbichler [Wed, 13 Jan 2010 15:57:03 +0000 (15:57 +0000)]

Clean up include files.

git-svn-id: https://svn.dealii.org/trunk@20361 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Wed, 13 Jan 2010 15:24:42 +0000 (15:24 +0000)]

rename file consistent with spelling of class

git-svn-id: https://svn.dealii.org/trunk@20360 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Wed, 13 Jan 2010 15:21:48 +0000 (15:21 +0000)]

ThetaTimestepping implemented and ready for testing

git-svn-id: https://svn.dealii.org/trunk@20359 0785d39b-7218-0410-832d-ea1e28bc413d

Avoid using level information explicitly as this might go wrong if anisotropic refinement has been used.

git-svn-id: https://svn.dealii.org/trunk@20358 0785d39b-7218-0410-832d-ea1e28bc413d

Removed a call to MaTCompress (matrix); This function was never implemented in PETSc, and has been slated for removal there

git-svn-id: https://svn.dealii.org/trunk@20357 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 13 Jan 2010 09:18:01 +0000 (09:18 +0000)]

Fix compile problems.

git-svn-id: https://svn.dealii.org/trunk@20354 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Wed, 13 Jan 2010 07:13:30 +0000 (07:13 +0000)]

set missing properties

git-svn-id: https://svn.dealii.org/trunk@20353 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Wed, 13 Jan 2010 07:10:56 +0000 (07:10 +0000)]

set missing properties

git-svn-id: https://svn.dealii.org/trunk@20352 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 12 Jan 2010 19:41:45 +0000 (19:41 +0000)]

Only list MADDs tutorial programs if they are there.

git-svn-id: https://svn.dealii.org/trunk@20351 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Tue, 12 Jan 2010 16:56:38 +0000 (16:56 +0000)]

start algorithms library

git-svn-id: https://svn.dealii.org/trunk@20350 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 11 Jan 2010 16:31:57 +0000 (16:31 +0000)]

Automatically generate deal.dox.

git-svn-id: https://svn.dealii.org/trunk@20349 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Mon, 11 Jan 2010 08:51:37 +0000 (08:51 +0000)]

making MeshWorker use data vectors

git-svn-id: https://svn.dealii.org/trunk@20348 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 11 Jan 2010 03:28:33 +0000 (03:28 +0000)]

Adjust in one place to fix the formatting. A couple of minor fixes as well.

git-svn-id: https://svn.dealii.org/trunk@20347 0785d39b-7218-0410-832d-ea1e28bc413d

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