https://gitweb.dealii.org/ - dealii-svn.git/log

bangerth [Sat, 13 Feb 2010 05:20:27 +0000 (05:20 +0000)]

More documentation.

git-svn-id: https://svn.dealii.org/trunk@20591 0785d39b-7218-0410-832d-ea1e28bc413d

bangerth [Sat, 13 Feb 2010 05:13:04 +0000 (05:13 +0000)]

Make previous commit useful so that we don't have to provide a template
argument by hand.

git-svn-id: https://svn.dealii.org/trunk@20590 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Feb 2010 04:53:39 +0000 (04:53 +0000)]

Provide default arguments for the two-argument initialize()
functions. Name second template argument for MGSmoothPrecondition
according to its meaning.

git-svn-id: https://svn.dealii.org/trunk@20589 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Feb 2010 04:35:56 +0000 (04:35 +0000)]

Default a couple template arguments for the most common case.

git-svn-id: https://svn.dealii.org/trunk@20588 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Feb 2010 04:35:01 +0000 (04:35 +0000)]

Highlight the glossary term. Capitalize them all.

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bangerth [Sat, 13 Feb 2010 01:20:33 +0000 (01:20 +0000)]

Undo change 20579 since it didn't compile.

git-svn-id: https://svn.dealii.org/trunk@20586 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Feb 2010 00:59:00 +0000 (00:59 +0000)]

Add add_lines(IndexSet).

git-svn-id: https://svn.dealii.org/trunk@20585 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Feb 2010 00:53:29 +0000 (00:53 +0000)]

Name .cc file the same as the .h file.

git-svn-id: https://svn.dealii.org/trunk@20584 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Feb 2010 00:52:48 +0000 (00:52 +0000)]

Name .cc file the same as the .h file.

git-svn-id: https://svn.dealii.org/trunk@20583 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 13 Feb 2010 00:52:05 +0000 (00:52 +0000)]

Add make_boundary_list also for IndexSet arguments.

git-svn-id: https://svn.dealii.org/trunk@20582 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 23:46:54 +0000 (23:46 +0000)]

More documentation.

git-svn-id: https://svn.dealii.org/trunk@20581 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 12 Feb 2010 23:12:56 +0000 (23:12 +0000)]

superfluous exception removed

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kanschat [Fri, 12 Feb 2010 23:12:23 +0000 (23:12 +0000)]

superfluous exception removed

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kanschat [Fri, 12 Feb 2010 23:11:40 +0000 (23:11 +0000)]

intro of step 38 rewritten

git-svn-id: https://svn.dealii.org/trunk@20578 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 22:35:38 +0000 (22:35 +0000)]

Don't use #word but <code>word</code>.

git-svn-id: https://svn.dealii.org/trunk@20577 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 12 Feb 2010 17:27:40 +0000 (17:27 +0000)]

updated doc, but not tested

git-svn-id: https://svn.dealii.org/trunk@20573 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 14:37:45 +0000 (14:37 +0000)]

Shrink picture.

git-svn-id: https://svn.dealii.org/trunk@20572 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 14:36:40 +0000 (14:36 +0000)]

More documentation.

git-svn-id: https://svn.dealii.org/trunk@20571 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 14:36:28 +0000 (14:36 +0000)]

Use a picture instead of a text graphic.

git-svn-id: https://svn.dealii.org/trunk@20570 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 14:22:37 +0000 (14:22 +0000)]

add

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bangerth [Fri, 12 Feb 2010 13:16:36 +0000 (13:16 +0000)]

Document a couple functions.

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bangerth [Fri, 12 Feb 2010 13:11:55 +0000 (13:11 +0000)]

Re-base step-16.

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bangerth [Fri, 12 Feb 2010 03:59:59 +0000 (03:59 +0000)]

Mark functions virtual as necessary.

git-svn-id: https://svn.dealii.org/trunk@20564 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 02:43:06 +0000 (02:43 +0000)]

Regenerate.

git-svn-id: https://svn.dealii.org/trunk@20563 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 02:42:38 +0000 (02:42 +0000)]

Add PETScWrappers::MPI::{Block,}Vector to list of vectors to instantiate.

git-svn-id: https://svn.dealii.org/trunk@20562 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 02:41:54 +0000 (02:41 +0000)]

Also instantiate with PETScWrappers::MPI::{Block,}Vector.

git-svn-id: https://svn.dealii.org/trunk@20561 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 12 Feb 2010 02:41:21 +0000 (02:41 +0000)]

Make a BlockVector::print function available.

git-svn-id: https://svn.dealii.org/trunk@20560 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 11 Feb 2010 22:06:03 +0000 (22:06 +0000)]

add doc for parameter

git-svn-id: https://svn.dealii.org/trunk@20559 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 11 Feb 2010 16:58:34 +0000 (16:58 +0000)]

Escape a word.

git-svn-id: https://svn.dealii.org/trunk@20557 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 11 Feb 2010 16:42:57 +0000 (16:42 +0000)]

More text, more outlook.

git-svn-id: https://svn.dealii.org/trunk@20554 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 11 Feb 2010 16:37:02 +0000 (16:37 +0000)]

Align table better.

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bangerth [Thu, 11 Feb 2010 16:04:22 +0000 (16:04 +0000)]

Remove now unnecessary output.

git-svn-id: https://svn.dealii.org/trunk@20551 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 11 Feb 2010 15:51:53 +0000 (15:51 +0000)]

Bring up to date.

git-svn-id: https://svn.dealii.org/trunk@20550 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 11 Feb 2010 15:35:52 +0000 (15:35 +0000)]

A few more.

git-svn-id: https://svn.dealii.org/trunk@20549 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 21:56:36 +0000 (21:56 +0000)]

Write a couple more words.

git-svn-id: https://svn.dealii.org/trunk@20548 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 21:50:17 +0000 (21:50 +0000)]

Simplify code.

git-svn-id: https://svn.dealii.org/trunk@20547 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 21:27:20 +0000 (21:27 +0000)]

add

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bangerth [Wed, 10 Feb 2010 21:24:37 +0000 (21:24 +0000)]

Use the same coefficient as in step-6.

git-svn-id: https://svn.dealii.org/trunk@20545 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 20:51:42 +0000 (20:51 +0000)]

Fix a bug noticed by Huan Sun.

git-svn-id: https://svn.dealii.org/trunk@20544 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 15:54:59 +0000 (15:54 +0000)]

Make sure we can compile with Tecplot.

git-svn-id: https://svn.dealii.org/trunk@20543 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 15:53:40 +0000 (15:53 +0000)]

Make sure we can compile with tecplot.

git-svn-id: https://svn.dealii.org/trunk@20542 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 15:48:19 +0000 (15:48 +0000)]

Specify a subject on regression mails.

git-svn-id: https://svn.dealii.org/trunk@20541 0785d39b-7218-0410-832d-ea1e28bc413d

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janssen [Wed, 10 Feb 2010 09:03:22 +0000 (09:03 +0000)]

do not use variable steps for smoothing in the multigrid cycle, but rather increase the nuber of smoothing steps

git-svn-id: https://svn.dealii.org/trunk@20540 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 10 Feb 2010 04:01:28 +0000 (04:01 +0000)]

reduce spaces :)

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kanschat [Wed, 10 Feb 2010 04:01:02 +0000 (04:01 +0000)]

add template argument to loop

git-svn-id: https://svn.dealii.org/trunk@20538 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 10 Feb 2010 03:59:06 +0000 (03:59 +0000)]

add subject to reduce spam count

git-svn-id: https://svn.dealii.org/trunk@20537 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 10 Feb 2010 03:06:44 +0000 (03:06 +0000)]

change function calls and data structures in mesh worker to conform to work stream

git-svn-id: https://svn.dealii.org/trunk@20536 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 01:04:58 +0000 (01:04 +0000)]

Output a bit more information on levels.

git-svn-id: https://svn.dealii.org/trunk@20535 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 00:24:32 +0000 (00:24 +0000)]

Write first sentence.

git-svn-id: https://svn.dealii.org/trunk@20534 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 00:21:08 +0000 (00:21 +0000)]

Escape a command.

git-svn-id: https://svn.dealii.org/trunk@20533 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 10 Feb 2010 00:16:56 +0000 (00:16 +0000)]

Add coefficient class. Currently not used.

git-svn-id: https://svn.dealii.org/trunk@20532 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Feb 2010 23:59:12 +0000 (23:59 +0000)]

Bring closer to what we do in step-6.

git-svn-id: https://svn.dealii.org/trunk@20531 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Feb 2010 23:45:58 +0000 (23:45 +0000)]

Write more.

git-svn-id: https://svn.dealii.org/trunk@20530 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Feb 2010 23:31:38 +0000 (23:31 +0000)]

Escape a word.

git-svn-id: https://svn.dealii.org/trunk@20529 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 9 Feb 2010 11:21:29 +0000 (11:21 +0000)]

Update copy_indices - use std::vector instead of std::map.

git-svn-id: https://svn.dealii.org/trunk@20526 0785d39b-7218-0410-832d-ea1e28bc413d

initialize the MGLevelObject correctly

git-svn-id: https://svn.dealii.org/trunk@20525 0785d39b-7218-0410-832d-ea1e28bc413d

put some output to debug>3

git-svn-id: https://svn.dealii.org/trunk@20524 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Feb 2010 23:54:21 +0000 (23:54 +0000)]

Make sure we use the included boost library. This isn't going to work if
someone tries to use an external boost version, but I can't see right now how
that would work in the first place. At least we'd have to test this once or twice.

git-svn-id: https://svn.dealii.org/trunk@20523 0785d39b-7218-0410-832d-ea1e28bc413d

MGTransferSelect prepared for use on adaptive meshes

git-svn-id: https://svn.dealii.org/trunk@20522 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 8 Feb 2010 11:35:07 +0000 (11:35 +0000)]

Change setting of boundary conditions in prolongation matrix.

git-svn-id: https://svn.dealii.org/trunk@20521 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 5 Feb 2010 21:34:00 +0000 (21:34 +0000)]

fix argument by value and do not use user_flags anymore

git-svn-id: https://svn.dealii.org/trunk@20517 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 5 Feb 2010 17:59:20 +0000 (17:59 +0000)]

Some more words.

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bangerth [Fri, 5 Feb 2010 17:51:15 +0000 (17:51 +0000)]

Minor adjustments.

git-svn-id: https://svn.dealii.org/trunk@20515 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 5 Feb 2010 17:50:16 +0000 (17:50 +0000)]

Use same code as in sparse_decomposition for importing a Trilinos matrix from a deal.II matrix, i.e., allow for different sparsity structures.

git-svn-id: https://svn.dealii.org/trunk@20514 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 5 Feb 2010 17:33:19 +0000 (17:33 +0000)]

Reference the mg paper.

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kanschat [Fri, 5 Feb 2010 17:12:09 +0000 (17:12 +0000)]

rename functions IntegrationInfo::fe to fe_values

git-svn-id: https://svn.dealii.org/trunk@20512 0785d39b-7218-0410-832d-ea1e28bc413d

some output should only occur if debug>2

git-svn-id: https://svn.dealii.org/trunk@20511 0785d39b-7218-0410-832d-ea1e28bc413d

now there is an instance for extract_inner_interface_dofs in 1d

git-svn-id: https://svn.dealii.org/trunk@20510 0785d39b-7218-0410-832d-ea1e28bc413d

fixed the name of a vector

git-svn-id: https://svn.dealii.org/trunk@20509 0785d39b-7218-0410-832d-ea1e28bc413d

changed the initialization of a vector back to the original state

git-svn-id: https://svn.dealii.org/trunk@20508 0785d39b-7218-0410-832d-ea1e28bc413d

make it compatible to older versions that didn't need boundary_indices in build_matrices

git-svn-id: https://svn.dealii.org/trunk@20507 0785d39b-7218-0410-832d-ea1e28bc413d

prepared MGTransferSelect for adaptive refinement, cleaned up mg_dof_tools.cc

git-svn-id: https://svn.dealii.org/trunk@20506 0785d39b-7218-0410-832d-ea1e28bc413d

prepared the MGTransferSelect for adaptive refinement, cleaned up in mg_tools.h

git-svn-id: https://svn.dealii.org/trunk@20505 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 5 Feb 2010 11:59:37 +0000 (11:59 +0000)]

When initializing a sparse decomposition (ILU etc) with an additional sparsity pattern, this sparsity pattern does not need to be a superset of the matrix sparsity pattern. This is allows e.g. to initialize an ILU with neglecting some zeros (Dirichlet boundary nodes) in the decomposition sparsity pattern without copying the matrix.

git-svn-id: https://svn.dealii.org/trunk@20504 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 5 Feb 2010 11:53:27 +0000 (11:53 +0000)]

More flexibility with initializing a Trilinos sparse matrix from a deal.II sparse matrix.

git-svn-id: https://svn.dealii.org/trunk@20503 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 5 Feb 2010 08:28:09 +0000 (08:28 +0000)]

Correctly set copy_indices when refinement is done.

git-svn-id: https://svn.dealii.org/trunk@20502 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 5 Feb 2010 04:07:25 +0000 (04:07 +0000)]

Bring up to standard with regard to multigrid on adaptive meshes.

git-svn-id: https://svn.dealii.org/trunk@20501 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 5 Feb 2010 01:46:28 +0000 (01:46 +0000)]

Add necessary output files.

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bangerth [Fri, 5 Feb 2010 00:07:55 +0000 (00:07 +0000)]

Adjust test results to also make them work with gcc 4.1.

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kronbichler [Thu, 4 Feb 2010 16:25:37 +0000 (16:25 +0000)]

Use a shortcut to the vector in copy_to_mg.

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kronbichler [Thu, 4 Feb 2010 15:13:00 +0000 (15:13 +0000)]

Set matrix size by std::size_t, not unsigned int, since on very large matrices with more than four billion nonzeros we might end up in setting the wrong matrix size.

git-svn-id: https://svn.dealii.org/trunk@20497 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 4 Feb 2010 15:11:54 +0000 (15:11 +0000)]

Express memory consumption in std::size_t since this can be quite large numbers.

git-svn-id: https://svn.dealii.org/trunk@20496 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 4 Feb 2010 15:06:04 +0000 (15:06 +0000)]

Allow even float matrices.

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kronbichler [Thu, 4 Feb 2010 15:04:13 +0000 (15:04 +0000)]

Use vector<shared_ptr<const vector> > instead of plain pointers in order to correctly free memory.

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kronbichler [Thu, 4 Feb 2010 11:24:09 +0000 (11:24 +0000)]

Simplify generation of copy_indices: do this from a std::vector that stores the mapping level_indices <> global_indices, which avoids sorting indices and compressing out duplicates.

git-svn-id: https://svn.dealii.org/trunk@20493 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 4 Feb 2010 11:22:51 +0000 (11:22 +0000)]

Simplify smoother usage a little bit. Avoid setting elements in vvectors that will be overwritten anyway.

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kronbichler [Thu, 4 Feb 2010 11:21:42 +0000 (11:21 +0000)]

Update in one comment. Remove trailing whitespace.

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kronbichler [Thu, 4 Feb 2010 08:08:18 +0000 (08:08 +0000)]

Undo free of static variable.

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kronbichler [Wed, 3 Feb 2010 15:59:43 +0000 (15:59 +0000)]

Fix a memory leak.

git-svn-id: https://svn.dealii.org/trunk@20489 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 3 Feb 2010 14:35:01 +0000 (14:35 +0000)]

Two more.

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bangerth [Wed, 3 Feb 2010 00:18:22 +0000 (00:18 +0000)]

Fix markup.

git-svn-id: https://svn.dealii.org/trunk@20487 0785d39b-7218-0410-832d-ea1e28bc413d

Corrected accent and grammer errors

git-svn-id: https://svn.dealii.org/trunk@20486 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 1 Feb 2010 15:55:59 +0000 (15:55 +0000)]

Use std::vector<std::pair<uint,uint> > instead of std::map<uint,uint> for describing the transfer from and to multigrid. This is considerably faster. Also improve imposition of boundary conditions in mg_transfer_prebuilt

git-svn-id: https://svn.dealii.org/trunk@20485 0785d39b-7218-0410-832d-ea1e28bc413d

Added paper to publication record

git-svn-id: https://svn.dealii.org/trunk@20484 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 1 Feb 2010 12:46:10 +0000 (12:46 +0000)]

Fix compile problem.

git-svn-id: https://svn.dealii.org/trunk@20482 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 1 Feb 2010 12:41:43 +0000 (12:41 +0000)]

Use new features introduced in branch_distributed_grids even in mainline.

git-svn-id: https://svn.dealii.org/trunk@20481 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 29 Jan 2010 17:19:21 +0000 (17:19 +0000)]

Check in a long-forgotten change.

git-svn-id: https://svn.dealii.org/trunk@20476 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 29 Jan 2010 17:05:57 +0000 (17:05 +0000)]

Ignore errors when making nofail as part of report.

git-svn-id: https://svn.dealii.org/trunk@20475 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 29 Jan 2010 15:53:42 +0000 (15:53 +0000)]

On machines with lots of processors, one or two long-running tests in
subdirectories can stop the progress of 'make report'. To prevent this, first
compile and run all tests once in parallel across all directories, and then
just do the report sequentially through the directories.

git-svn-id: https://svn.dealii.org/trunk@20474 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 28 Jan 2010 23:10:38 +0000 (23:10 +0000)]

Update some more tests.

git-svn-id: https://svn.dealii.org/trunk@20473 0785d39b-7218-0410-832d-ea1e28bc413d

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