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4 years agoMerge pull request #9835 from kronbichler/parallelize_mapping_info_q
Martin Kronbichler [Sat, 9 May 2020 19:51:27 +0000 (21:51 +0200)]
Merge pull request #9835 from kronbichler/parallelize_mapping_info_q

Parallelize the main loops of MappingInfo::compute_mapping_q

4 years agoMerge pull request #9883 from tcclevenger/step-50
Martin Kronbichler [Sat, 9 May 2020 19:50:53 +0000 (21:50 +0200)]
Merge pull request #9883 from tcclevenger/step-50

Finish step-50

4 years agocomment code 9883/head
Timo Heister [Sun, 3 May 2020 20:49:44 +0000 (16:49 -0400)]
comment code

4 years agoAdd results
tcclevenger [Thu, 23 Apr 2020 21:53:42 +0000 (17:53 -0400)]
Add results

4 years agoupdate intro/changes
tcclevenger [Mon, 20 Apr 2020 15:12:11 +0000 (11:12 -0400)]
update intro/changes

4 years agostep-50
tcclevenger [Fri, 10 Apr 2020 19:10:42 +0000 (15:10 -0400)]
step-50

4 years agoMerge pull request #10103 from kronbichler/mark_override
Peter Munch [Sat, 9 May 2020 12:10:49 +0000 (14:10 +0200)]
Merge pull request #10103 from kronbichler/mark_override

Mark LaplaceOperator::apply_add as override

4 years agoParallelize main loops of MappingInfo::compute_mapping_q 9835/head
Martin Kronbichler [Mon, 6 Apr 2020 06:03:56 +0000 (08:03 +0200)]
Parallelize main loops of MappingInfo::compute_mapping_q

4 years agoBreak up first part of MappingQ setup to make it parallelizable
Martin Kronbichler [Mon, 6 Apr 2020 05:25:08 +0000 (07:25 +0200)]
Break up first part of MappingQ setup to make it parallelizable

4 years agoMark LaplaceOperator::apply_add as override 10103/head
Martin Kronbichler [Sat, 9 May 2020 05:56:04 +0000 (07:56 +0200)]
Mark LaplaceOperator::apply_add as override

4 years agoMerge pull request #10102 from kronbichler/fix_build_tidy
Martin Kronbichler [Sat, 9 May 2020 10:11:56 +0000 (12:11 +0200)]
Merge pull request #10102 from kronbichler/fix_build_tidy

Qualify a call to parallel::apply_to_subrange

4 years agoQualify a call to parallel::apply_to_subrange 10102/head
Martin Kronbichler [Sat, 9 May 2020 05:51:52 +0000 (07:51 +0200)]
Qualify a call to parallel::apply_to_subrange

4 years agoMerge pull request #10087 from peterrum/feq_hold_all_faces_to_owned_cells
Daniel Arndt [Sat, 9 May 2020 01:13:46 +0000 (21:13 -0400)]
Merge pull request #10087 from peterrum/feq_hold_all_faces_to_owned_cells

4 years agoMerge pull request #10084 from kronbichler/fix_pre_post_loops
Timo Heister [Sat, 9 May 2020 00:52:17 +0000 (20:52 -0400)]
Merge pull request #10084 from kronbichler/fix_pre_post_loops

Fix matrix-free pre/post loops with threads

4 years agoMerge pull request #10099 from kronbichler/fix_compile_gcc10
Daniel Arndt [Fri, 8 May 2020 23:33:44 +0000 (19:33 -0400)]
Merge pull request #10099 from kronbichler/fix_compile_gcc10

4 years agoMerge pull request #10092 from peterrum/pft_fix_sorting
Daniel Arndt [Fri, 8 May 2020 22:52:36 +0000 (18:52 -0400)]
Merge pull request #10092 from peterrum/pft_fix_sorting

4 years agoMerge pull request #10098 from tjhei/copyright-fix-script
Daniel Arndt [Fri, 8 May 2020 22:41:32 +0000 (18:41 -0400)]
Merge pull request #10098 from tjhei/copyright-fix-script

4 years agoMerge pull request #10064 from tamiko/fix_a_test_7
Martin Kronbichler [Fri, 8 May 2020 20:40:42 +0000 (22:40 +0200)]
Merge pull request #10064 from tamiko/fix_a_test_7

Tests: symengine/cse*: Disable unstable output

4 years agoMerge pull request #10065 from masterleinad/gcc-10-fixes
Martin Kronbichler [Fri, 8 May 2020 20:39:31 +0000 (22:39 +0200)]
Merge pull request #10065 from masterleinad/gcc-10-fixes

Silence gcc-10 warnings about invalid array accesses

4 years agoDisable hold_all_faces_to_owned_cells for FE_Q 10087/head
Peter Munch [Fri, 8 May 2020 13:22:37 +0000 (15:22 +0200)]
Disable hold_all_faces_to_owned_cells for FE_Q

4 years agoFix compilation with gcc-10 10099/head
Martin Kronbichler [Fri, 8 May 2020 20:01:21 +0000 (22:01 +0200)]
Fix compilation with gcc-10

4 years agoupdate copyright 10098/head
Timo Heister [Fri, 8 May 2020 18:30:31 +0000 (14:30 -0400)]
update copyright

4 years agomodify script
Timo Heister [Fri, 8 May 2020 18:19:16 +0000 (14:19 -0400)]
modify script

do not use the words in this commit

4 years agoMerge pull request #10094 from tjhei/release_step_0c
Martin Kronbichler [Fri, 8 May 2020 19:23:03 +0000 (21:23 +0200)]
Merge pull request #10094 from tjhei/release_step_0c

release step 0c: doxygen formatting

4 years agoMerge pull request #10095 from tjhei/mf_add_missing_override
Daniel Arndt [Fri, 8 May 2020 19:07:33 +0000 (15:07 -0400)]
Merge pull request #10095 from tjhei/mf_add_missing_override

4 years agoMerge pull request #10097 from tjhei/copyright
Daniel Arndt [Fri, 8 May 2020 18:59:57 +0000 (14:59 -0400)]
Merge pull request #10097 from tjhei/copyright

4 years agoMerge pull request #10096 from tjhei/minor1
Daniel Arndt [Fri, 8 May 2020 18:15:54 +0000 (14:15 -0400)]
Merge pull request #10096 from tjhei/minor1

4 years agoupdate copyright years 10097/head
Timo Heister [Fri, 8 May 2020 18:05:28 +0000 (14:05 -0400)]
update copyright years

4 years agoadd some empty lines 10096/head
Timo Heister [Fri, 8 May 2020 17:53:23 +0000 (13:53 -0400)]
add some empty lines

4 years agoadd missing override 10095/head
Timo Heister [Fri, 8 May 2020 17:49:30 +0000 (13:49 -0400)]
add missing override

4 years agoMerge pull request #10091 from tjhei/boost_bind_warning
Timo Heister [Fri, 8 May 2020 17:10:31 +0000 (13:10 -0400)]
Merge pull request #10091 from tjhei/boost_bind_warning

hide boost deprecation warning with 1.73

4 years agoMerge pull request #10089 from tjhei/fix_boost_1.73
Daniel Arndt [Fri, 8 May 2020 16:32:55 +0000 (12:32 -0400)]
Merge pull request #10089 from tjhei/fix_boost_1.73

4 years agoFix sorting of cells in p:f:t 10092/head
Peter Munch [Fri, 8 May 2020 15:33:30 +0000 (17:33 +0200)]
Fix sorting of cells in p:f:t

4 years agorelease step 0c: doxygen formatting 10094/head
Timo Heister [Fri, 8 May 2020 16:03:26 +0000 (12:03 -0400)]
release step 0c: doxygen formatting

Nothing major, just putting @ref and <br> on separate lines. Everything
else looks good.

4 years agoMerge pull request #10012 from kronbichler/mf_group_cells
Martin Kronbichler [Fri, 8 May 2020 15:41:19 +0000 (17:41 +0200)]
Merge pull request #10012 from kronbichler/mf_group_cells

Group cells by parents in matrix-free setup

4 years agoMerge pull request #10079 from nfehn/manifolds
Martin Kronbichler [Fri, 8 May 2020 15:24:27 +0000 (17:24 +0200)]
Merge pull request #10079 from nfehn/manifolds

correct docu of GridTools::transform() and GridGenerator::cylinder()

4 years agoMerge pull request #10076 from tamiko/fix_query_testsuite_script
Timo Heister [Fri, 8 May 2020 15:07:06 +0000 (11:07 -0400)]
Merge pull request #10076 from tamiko/fix_query_testsuite_script

contrib/utilities/query_testsuite: modernize

4 years agohide boost deprecation warning with 1.73 10091/head
Timo Heister [Fri, 8 May 2020 14:54:48 +0000 (10:54 -0400)]
hide boost deprecation warning with 1.73

boost 1.73 deprecated boost/bind.hpp but uses it internally. Defining
this macro silences the warnings.

fixes #10090

4 years agoremove boost include to fix compilation 10089/head
Timo Heister [Fri, 8 May 2020 14:30:27 +0000 (10:30 -0400)]
remove boost include to fix compilation

fixes #10088

4 years agoMerge pull request #10067 from tamiko/fix_a_test_8
Daniel Arndt [Fri, 8 May 2020 12:55:14 +0000 (08:55 -0400)]
Merge pull request #10067 from tamiko/fix_a_test_8

4 years agoMerge pull request #10083 from kronbichler/fix_tests-2
Daniel Arndt [Fri, 8 May 2020 12:38:27 +0000 (08:38 -0400)]
Merge pull request #10083 from kronbichler/fix_tests-2

4 years agoMerge pull request #10080 from kronbichler/fix_step-37-inhomogeneous
Martin Kronbichler [Fri, 8 May 2020 11:27:58 +0000 (13:27 +0200)]
Merge pull request #10080 from kronbichler/fix_step-37-inhomogeneous

Undo accidental change in test result file with LAPACK

4 years agocorrect docu of GridTools::transform() and GridGenerator::cylinder() 10079/head
Niklas Fehn [Fri, 8 May 2020 05:47:15 +0000 (07:47 +0200)]
correct docu of GridTools::transform() and GridGenerator::cylinder()

4 years agoMerge pull request #9948 from peterrum/coarse_cell_index_to_coarse_cell_id_private
Martin Kronbichler [Fri, 8 May 2020 10:28:05 +0000 (12:28 +0200)]
Merge pull request #9948 from peterrum/coarse_cell_index_to_coarse_cell_id_private

Make coarse_cell_*_to_coarse_cell_* private

4 years agoMerge pull request #10077 from bangerth/upload
Martin Kronbichler [Fri, 8 May 2020 10:02:21 +0000 (12:02 +0200)]
Merge pull request #10077 from bangerth/upload

Minor update to the section on uploading test results.

4 years agoMerge pull request #10081 from nfehn/merge_triangulations
Martin Kronbichler [Fri, 8 May 2020 10:00:42 +0000 (12:00 +0200)]
Merge pull request #10081 from nfehn/merge_triangulations

merge_triangulations(): reformulate documentation

4 years agoTest case for new feature 10084/head
Martin Kronbichler [Fri, 8 May 2020 09:39:30 +0000 (11:39 +0200)]
Test case for new feature

4 years agoFix matrix-free pre/post loops with threads
Martin Kronbichler [Fri, 8 May 2020 09:39:15 +0000 (11:39 +0200)]
Fix matrix-free pre/post loops with threads

4 years agoMake a few tests check what they are supposed to 10083/head
Martin Kronbichler [Fri, 8 May 2020 07:08:39 +0000 (09:08 +0200)]
Make a few tests check what they are supposed to

4 years agomerge_triangulations(): formulate documentation in a way that keeping the manifolds... 10081/head
Niklas Fehn [Fri, 8 May 2020 06:04:05 +0000 (08:04 +0200)]
merge_triangulations(): formulate documentation in a way that keeping the manifolds is the expected default behavior

4 years agoUndo accidental change in test result file with LAPACK 10080/head
Martin Kronbichler [Fri, 8 May 2020 05:57:04 +0000 (07:57 +0200)]
Undo accidental change in test result file with LAPACK

4 years agoMerge pull request #10069 from tamiko/fix_a_test_10
Martin Kronbichler [Fri, 8 May 2020 05:46:06 +0000 (07:46 +0200)]
Merge pull request #10069 from tamiko/fix_a_test_10

base/utilities_pack_unpack_07: Add a variant for clang-10/libc++

4 years agoMerge pull request #10070 from tamiko/fix_a_test_11
Martin Kronbichler [Fri, 8 May 2020 05:45:32 +0000 (07:45 +0200)]
Merge pull request #10070 from tamiko/fix_a_test_11

arpack/step-36_ar_shift: use solver_within_range macro

4 years agoMerge pull request #10071 from tamiko/fix_a_test_12
Martin Kronbichler [Fri, 8 May 2020 05:45:01 +0000 (07:45 +0200)]
Merge pull request #10071 from tamiko/fix_a_test_12

adolc/helper_tape_index_01: Increase tolerance

4 years agoMerge pull request #10068 from tamiko/fix_a_test_9
Jean-Paul Pelteret [Fri, 8 May 2020 05:18:13 +0000 (07:18 +0200)]
Merge pull request #10068 from tamiko/fix_a_test_9

symengine/batch_optimizer: Add output variants

4 years agoMerge pull request #10078 from bangerth/typo
Martin Kronbichler [Fri, 8 May 2020 05:05:39 +0000 (07:05 +0200)]
Merge pull request #10078 from bangerth/typo

Fix a grammar error.

4 years agoFix a grammar error. 10078/head
Wolfgang Bangerth [Fri, 8 May 2020 04:21:54 +0000 (22:21 -0600)]
Fix a grammar error.

4 years agoMinor update to the section on uploading test results. 10077/head
Wolfgang Bangerth [Fri, 8 May 2020 03:44:57 +0000 (21:44 -0600)]
Minor update to the section on uploading test results.

4 years agoMerge pull request #10074 from drwells/double-word-typos-2
Daniel Arndt [Fri, 8 May 2020 03:35:32 +0000 (23:35 -0400)]
Merge pull request #10074 from drwells/double-word-typos-2

4 years agoMerge pull request #10075 from drwells/run-codespell
Daniel Arndt [Fri, 8 May 2020 03:35:15 +0000 (23:35 -0400)]
Merge pull request #10075 from drwells/run-codespell

4 years agoreverse sorting 10076/head
Matthias Maier [Fri, 8 May 2020 03:10:33 +0000 (22:10 -0500)]
reverse sorting

4 years agoimprove script description - every script deserves to be loved
Matthias Maier [Fri, 8 May 2020 03:06:26 +0000 (22:06 -0500)]
improve script description - every script deserves to be loved

4 years agoadd a helpful error message
Matthias Maier [Fri, 8 May 2020 03:02:37 +0000 (22:02 -0500)]
add a helpful error message

4 years agoupdate script to new api/v1 interface
Matthias Maier [Fri, 8 May 2020 02:51:45 +0000 (21:51 -0500)]
update script to new api/v1 interface

4 years agoRun codespell. 10075/head
David Wells [Fri, 8 May 2020 02:05:29 +0000 (22:05 -0400)]
Run codespell.

4 years agoRemove double word typos. 10074/head
David Wells [Fri, 8 May 2020 01:36:11 +0000 (21:36 -0400)]
Remove double word typos.

4 years agoadolc/helper_tape_index_01: Increase tolerance 10071/head
Matthias Maier [Thu, 7 May 2020 23:44:46 +0000 (18:44 -0500)]
adolc/helper_tape_index_01: Increase tolerance

4 years agoarpack/step-36_ar_shift: use solver_within_range macro 10070/head
Matthias Maier [Thu, 7 May 2020 23:39:38 +0000 (18:39 -0500)]
arpack/step-36_ar_shift: use solver_within_range macro

4 years agoMerge pull request #10046 from bangerth/vec
Matthias Maier [Thu, 7 May 2020 23:27:20 +0000 (18:27 -0500)]
Merge pull request #10046 from bangerth/vec

Augment the documentation of operator<< for Vector.

4 years agoMerge pull request #10047 from bangerth/cxx
Matthias Maier [Thu, 7 May 2020 23:25:51 +0000 (18:25 -0500)]
Merge pull request #10047 from bangerth/cxx

Better document C++11/14/17/20.

4 years agoMerge pull request #10062 from kronbichler/fix_read_dof_values_plain
Matthias Maier [Thu, 7 May 2020 23:24:11 +0000 (18:24 -0500)]
Merge pull request #10062 from kronbichler/fix_read_dof_values_plain

Fix bug in FEFaceEvaluation::read_dof_values_plain

4 years agoMerge pull request #10066 from jppelteret/sd-llvm_patch_01
Matthias Maier [Thu, 7 May 2020 23:22:45 +0000 (18:22 -0500)]
Merge pull request #10066 from jppelteret/sd-llvm_patch_01

Disable a fallback option in the BatchOptimizer

4 years agobase/utilities_pack_unpack_07: Add a variant for clang-10/libc++ 10069/head
Matthias Maier [Thu, 7 May 2020 23:18:52 +0000 (18:18 -0500)]
base/utilities_pack_unpack_07: Add a variant for clang-10/libc++

Unfortunately, the compression level changes significantly for
clang-10/libc++. Add an output variant

4 years agosymengine/batch_optimizer: Add output variants 10068/head
Matthias Maier [Thu, 7 May 2020 23:10:04 +0000 (18:10 -0500)]
symengine/batch_optimizer: Add output variants

Depending on architecture these tests produce slightly different results
with a relative error of just above 1e-6. Fix this by providing output
variants for clang-10 with libc++

4 years agosymengine/batch_optimizer: Increase number of printed digits 10067/head
Matthias Maier [Thu, 7 May 2020 22:35:54 +0000 (17:35 -0500)]
symengine/batch_optimizer: Increase number of printed digits

We need to output more digits here in order for numdiff to take effect.

4 years agoDisable a fallback option in the BatchOptimizer 10066/head
Jean-Paul Pelteret [Thu, 7 May 2020 21:58:07 +0000 (23:58 +0200)]
Disable a fallback option in the BatchOptimizer

This is what is promised in the documentation, and I forgot to change the behaviour everywhere.

4 years agoSilence gcc-10 warnings about invalid array accesses 10065/head
Daniel Arndt [Thu, 7 May 2020 21:18:14 +0000 (17:18 -0400)]
Silence gcc-10 warnings about invalid array accesses

4 years agoTests: symengine/cse*: Disable unstable output 10064/head
Matthias Maier [Thu, 7 May 2020 19:38:40 +0000 (14:38 -0500)]
Tests: symengine/cse*: Disable unstable output

The internal optimizer state is unfortunately not stable. I get
different results for every combination of compiler, standard library
and, optimization flags I use.

Thus, simply disable this portion of the output. (Note that the result
still gets checked for correctness with a barrage of Asserts.)

4 years agoMerge pull request #10056 from jppelteret/fevalues_dof_idx_rbl-tuts
Daniel Arndt [Thu, 7 May 2020 21:13:09 +0000 (17:13 -0400)]
Merge pull request #10056 from jppelteret/fevalues_dof_idx_rbl-tuts

4 years agoMerge pull request #10063 from jppelteret/sd-doc_04
Bruno Turcksin [Thu, 7 May 2020 20:13:03 +0000 (16:13 -0400)]
Merge pull request #10063 from jppelteret/sd-doc_04

4 years agoMerge pull request #10050 from rezarastak/mark_lapack
Daniel Arndt [Thu, 7 May 2020 20:06:23 +0000 (16:06 -0400)]
Merge pull request #10050 from rezarastak/mark_lapack

4 years agoMerge pull request #10053 from Rombur/overlap_comm
Peter Munch [Thu, 7 May 2020 19:17:11 +0000 (21:17 +0200)]
Merge pull request #10053 from Rombur/overlap_comm

CUDA matrix-free: overlap communication and computation

4 years agoChangelog 10062/head
Martin Kronbichler [Thu, 7 May 2020 15:08:41 +0000 (17:08 +0200)]
Changelog

4 years agoTest case
Martin Kronbichler [Thu, 7 May 2020 15:08:31 +0000 (17:08 +0200)]
Test case

4 years agoConvert step-44 to use FEValues range based loops 10056/head
Jean-Paul Pelteret [Thu, 7 May 2020 06:23:05 +0000 (08:23 +0200)]
Convert step-44 to use FEValues range based loops

4 years agoImprove documentation of a BatchOptimizer function 10063/head
Jean-Paul Pelteret [Thu, 7 May 2020 17:19:16 +0000 (19:19 +0200)]
Improve documentation of a BatchOptimizer function

4 years agoSome tests depend on lapack 10050/head
Reza Rastak [Wed, 6 May 2020 23:29:09 +0000 (16:29 -0700)]
Some tests depend on lapack

4 years agoMerge pull request #10059 from bangerth/changelog
Martin Kronbichler [Thu, 7 May 2020 15:20:18 +0000 (17:20 +0200)]
Merge pull request #10059 from bangerth/changelog

Add a changelog entry.

4 years agoFix bug in FEFaceEvaluation::read_dof_values_plain
Martin Kronbichler [Thu, 7 May 2020 15:08:18 +0000 (17:08 +0200)]
Fix bug in FEFaceEvaluation::read_dof_values_plain

4 years agoMerge pull request #9978 from mwichro/fix_FE_interface_for_mg
Luca Heltai [Thu, 7 May 2020 14:06:36 +0000 (16:06 +0200)]
Merge pull request #9978 from mwichro/fix_FE_interface_for_mg

Fix FEInterface for MG support

4 years agoAdd changelog entry 10053/head
Bruno Turcksin [Thu, 7 May 2020 01:45:51 +0000 (21:45 -0400)]
Add changelog entry

4 years agoOverlap communication and computation
Bruno Turcksin [Wed, 15 Apr 2020 02:08:59 +0000 (02:08 +0000)]
Overlap communication and computation

4 years agoExtend documentation
Bruno Turcksin [Tue, 21 Apr 2020 18:23:13 +0000 (18:23 +0000)]
Extend documentation

4 years agoAdd a changelog entry. 10059/head
Wolfgang Bangerth [Thu, 7 May 2020 12:19:33 +0000 (06:19 -0600)]
Add a changelog entry.

4 years agoMerge pull request #10033 from rezarastak/remove_tol
Martin Kronbichler [Thu, 7 May 2020 11:10:00 +0000 (13:10 +0200)]
Merge pull request #10033 from rezarastak/remove_tol

The tolerance parameter is removed from project_tensor

4 years agoMerge pull request #10051 from tamiko/fix_a_test_3
Martin Kronbichler [Thu, 7 May 2020 11:08:24 +0000 (13:08 +0200)]
Merge pull request #10051 from tamiko/fix_a_test_3

fe/memory_consumption_01: remove test

4 years agoMerge pull request #10055 from tamiko/fix_a_test_6
Martin Kronbichler [Thu, 7 May 2020 11:07:53 +0000 (13:07 +0200)]
Merge pull request #10055 from tamiko/fix_a_test_6

rol/vector_adaptor_02: port to Trilinos 12.18.1

4 years agoMerge pull request #10054 from tamiko/fix_a_test_5
Martin Kronbichler [Thu, 7 May 2020 11:07:12 +0000 (13:07 +0200)]
Merge pull request #10054 from tamiko/fix_a_test_5

serialization/fe_series_0?: Add test variants for libc++

4 years agoMerge pull request #10052 from tamiko/fix_a_test_4
Martin Kronbichler [Thu, 7 May 2020 11:06:42 +0000 (13:06 +0200)]
Merge pull request #10052 from tamiko/fix_a_test_4

mpi/petsc_step-27*: add a test variant for petsc-3.13 and newer

4 years agoAdd a comment 10012/head
Martin Kronbichler [Thu, 7 May 2020 11:03:15 +0000 (13:03 +0200)]
Add a comment


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