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https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Mon, 20 May 2013 16:08:45 +0000 (16:08 +0000)]
Add missing include file.
git-svn-id: https://svn.dealii.org/trunk@29527
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maier [Mon, 20 May 2013 16:05:43 +0000 (16:05 +0000)]
Fixup two comments ;-)
git-svn-id: https://svn.dealii.org/trunk@29526
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bangerth [Mon, 20 May 2013 14:08:26 +0000 (14:08 +0000)]
Make make_periodicity_constraints work with locally refined meshes as well.
git-svn-id: https://svn.dealii.org/trunk@29525
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bangerth [Sat, 18 May 2013 12:49:17 +0000 (12:49 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@29524
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bangerth [Fri, 17 May 2013 21:08:29 +0000 (21:08 +0000)]
Fix a couple of typos.
git-svn-id: https://svn.dealii.org/trunk@29523
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bangerth [Fri, 17 May 2013 17:37:25 +0000 (17:37 +0000)]
More progress on periodic boundary conditions.
git-svn-id: https://svn.dealii.org/trunk@29522
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bangerth [Thu, 16 May 2013 22:10:32 +0000 (22:10 +0000)]
Refactor a bit, in preparation to dealing with periodic faces not on
the same refinement level.
git-svn-id: https://svn.dealii.org/trunk@29521
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bangerth [Thu, 16 May 2013 21:08:43 +0000 (21:08 +0000)]
Add standard file header.
git-svn-id: https://svn.dealii.org/trunk@29520
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bangerth [Thu, 16 May 2013 12:44:16 +0000 (12:44 +0000)]
Move slightly forward.
git-svn-id: https://svn.dealii.org/trunk@29519
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kronbichler [Thu, 16 May 2013 07:13:12 +0000 (07:13 +0000)]
Fix warning
git-svn-id: https://svn.dealii.org/trunk@29518
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kronbichler [Thu, 16 May 2013 07:10:22 +0000 (07:10 +0000)]
Fix undefined references with Intel compiler.
git-svn-id: https://svn.dealii.org/trunk@29517
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kronbichler [Wed, 15 May 2013 08:21:03 +0000 (08:21 +0000)]
Simplify get_interpolation_matrix
git-svn-id: https://svn.dealii.org/trunk@29516
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kronbichler [Wed, 15 May 2013 06:46:27 +0000 (06:46 +0000)]
Fix clear function of MatrixFree
git-svn-id: https://svn.dealii.org/trunk@29515
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kronbichler [Wed, 15 May 2013 05:40:04 +0000 (05:40 +0000)]
Make compile with older compilers.
git-svn-id: https://svn.dealii.org/trunk@29514
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kronbichler [Tue, 14 May 2013 16:00:12 +0000 (16:00 +0000)]
Adjust output difference of the form 0.938/0.937 with exact value 0.9375 that is different due to change in FE_Q_Base (more specifically, polynomials of order 1-3 are now evaluated from tabulated coefficients and not product form for constraints, interpolation and restriction matrices). Also updated memory consumption as there is now an array less in FE_Q.
git-svn-id: https://svn.dealii.org/trunk@29513
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kronbichler [Tue, 14 May 2013 15:15:15 +0000 (15:15 +0000)]
Fix include file locations.
git-svn-id: https://svn.dealii.org/trunk@29512
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kronbichler [Tue, 14 May 2013 15:01:54 +0000 (15:01 +0000)]
Avoid running into an assertion for very high order.
git-svn-id: https://svn.dealii.org/trunk@29511
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kronbichler [Tue, 14 May 2013 14:29:26 +0000 (14:29 +0000)]
Undo accidental check-in.
git-svn-id: https://svn.dealii.org/trunk@29510
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kronbichler [Tue, 14 May 2013 14:28:25 +0000 (14:28 +0000)]
Make compile with older gcc.
git-svn-id: https://svn.dealii.org/trunk@29509
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kronbichler [Tue, 14 May 2013 14:13:36 +0000 (14:13 +0000)]
Update comment
git-svn-id: https://svn.dealii.org/trunk@29508
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kronbichler [Tue, 14 May 2013 14:11:09 +0000 (14:11 +0000)]
Implement FE_Q_iso_Q1 element, i.e., an element that consists of several Q1 elements but with internal degrees of (higher order) FE_Q.
git-svn-id: https://svn.dealii.org/trunk@29507
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young [Tue, 14 May 2013 09:16:39 +0000 (09:16 +0000)]
handle SLEPc descriptions.
git-svn-id: https://svn.dealii.org/trunk@29506
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bangerth [Mon, 13 May 2013 21:55:19 +0000 (21:55 +0000)]
Add a sentence to the documentation.
git-svn-id: https://svn.dealii.org/trunk@29505
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bangerth [Mon, 13 May 2013 15:31:07 +0000 (15:31 +0000)]
Improve documentation somewhat.
git-svn-id: https://svn.dealii.org/trunk@29504
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kronbichler [Mon, 13 May 2013 07:20:47 +0000 (07:20 +0000)]
Fix include files
git-svn-id: https://svn.dealii.org/trunk@29503
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kronbichler [Mon, 13 May 2013 05:38:03 +0000 (05:38 +0000)]
Mention fix in ConvergenceTable.
git-svn-id: https://svn.dealii.org/trunk@29502
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bangerth [Sun, 12 May 2013 21:37:12 +0000 (21:37 +0000)]
Implement writing time and cycle to VTU files.
git-svn-id: https://svn.dealii.org/trunk@29501
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bangerth [Sun, 12 May 2013 21:16:05 +0000 (21:16 +0000)]
Implement writing time and cycle to VTK files. VTU format is still missing.
git-svn-id: https://svn.dealii.org/trunk@29500
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bangerth [Sat, 11 May 2013 09:12:28 +0000 (09:12 +0000)]
Fix a bunch of misspellings of the name "Dirichlet".
git-svn-id: https://svn.dealii.org/trunk@29499
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kronbichler [Fri, 10 May 2013 17:13:06 +0000 (17:13 +0000)]
Forgot new test output
git-svn-id: https://svn.dealii.org/trunk@29498
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kronbichler [Fri, 10 May 2013 16:51:44 +0000 (16:51 +0000)]
Fix one more issue, augment documentation of new parameter.
git-svn-id: https://svn.dealii.org/trunk@29497
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kronbichler [Fri, 10 May 2013 15:47:24 +0000 (15:47 +0000)]
Fix issue 28.
git-svn-id: https://svn.dealii.org/trunk@29496
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bangerth [Fri, 10 May 2013 15:11:59 +0000 (15:11 +0000)]
Remove stray 'typename' keywords.
git-svn-id: https://svn.dealii.org/trunk@29495
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young [Fri, 10 May 2013 12:50:18 +0000 (12:50 +0000)]
Remove one & comment one 1d-assertion.
git-svn-id: https://svn.dealii.org/trunk@29494
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young [Fri, 10 May 2013 12:45:52 +0000 (12:45 +0000)]
Patch MathGL to output 3d grids.
git-svn-id: https://svn.dealii.org/trunk@29493
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young [Fri, 10 May 2013 11:56:09 +0000 (11:56 +0000)]
Note to self about eigenpair logic...
git-svn-id: https://svn.dealii.org/trunk@29492
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young [Fri, 10 May 2013 11:51:21 +0000 (11:51 +0000)]
Get imaginary parts of eigenpairs.
git-svn-id: https://svn.dealii.org/trunk@29491
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heister [Thu, 9 May 2013 23:30:06 +0000 (23:30 +0000)]
fix r29449
git-svn-id: https://svn.dealii.org/trunk@29490
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kronbichler [Thu, 9 May 2013 20:31:53 +0000 (20:31 +0000)]
It is cleaner to call Epetra_Matrix::Multiply with Epetra_MultiVector
git-svn-id: https://svn.dealii.org/trunk@29489
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kronbichler [Thu, 9 May 2013 13:13:18 +0000 (13:13 +0000)]
Simplify TrilinosWrappers::SparseMatrix::vmult a bit more by using the same code for all different vector types.
git-svn-id: https://svn.dealii.org/trunk@29487
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kronbichler [Thu, 9 May 2013 12:55:58 +0000 (12:55 +0000)]
Extend MatrixTools::create_mass_matrix and MatrixTools::create_laplace_matrix.
git-svn-id: https://svn.dealii.org/trunk@29486
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kronbichler [Thu, 9 May 2013 06:58:30 +0000 (06:58 +0000)]
Adjust test output: Trilinos has apparently a call to rand() somewhere which affects the random elements we put into the matrix (now there is one initialization less in the Trilinos matrix).
git-svn-id: https://svn.dealii.org/trunk@29485
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bangerth [Thu, 9 May 2013 00:01:22 +0000 (00:01 +0000)]
Remove all uses of a removed variable.
git-svn-id: https://svn.dealii.org/trunk@29484
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kronbichler [Wed, 8 May 2013 20:11:04 +0000 (20:11 +0000)]
Implement a few more matrix-vector products with Trilinos matrices and deal.II vectors. Avoid usage of temporary arrays in Trilinos sparse matrix add/set functoin to make it really thread safe.
git-svn-id: https://svn.dealii.org/trunk@29483
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kronbichler [Wed, 8 May 2013 10:52:17 +0000 (10:52 +0000)]
Fix change description
git-svn-id: https://svn.dealii.org/trunk@29482
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bangerth [Wed, 8 May 2013 08:48:49 +0000 (08:48 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29481
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kronbichler [Wed, 8 May 2013 08:03:31 +0000 (08:03 +0000)]
Improve advance() operation and comparison operation a bit.
git-svn-id: https://svn.dealii.org/trunk@29480
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kronbichler [Wed, 8 May 2013 05:33:41 +0000 (05:33 +0000)]
Adjust output (row length in ChunkSparsityPattern is now exact also when n_rows()/chunk_size is nonzero.
git-svn-id: https://svn.dealii.org/trunk@29479
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kronbichler [Tue, 7 May 2013 19:34:21 +0000 (19:34 +0000)]
Different BLAS versions apparently produce different stopping residuals with Bicgstab. Use tighter tolerance.
git-svn-id: https://svn.dealii.org/trunk@29478
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kronbichler [Tue, 7 May 2013 17:14:50 +0000 (17:14 +0000)]
Mention change
git-svn-id: https://svn.dealii.org/trunk@29477
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kronbichler [Tue, 7 May 2013 17:14:12 +0000 (17:14 +0000)]
Implement iterator for ChunkSparseMatrix. Parallelize matrix-vector product for ChunkSparseMatrix.
git-svn-id: https://svn.dealii.org/trunk@29476
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kainan.wang [Tue, 7 May 2013 16:58:38 +0000 (16:58 +0000)]
Add two authors; make a correction in documentation
git-svn-id: https://svn.dealii.org/trunk@29475
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kronbichler [Tue, 7 May 2013 09:55:38 +0000 (09:55 +0000)]
Fix comment.
git-svn-id: https://svn.dealii.org/trunk@29474
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kronbichler [Tue, 7 May 2013 09:51:51 +0000 (09:51 +0000)]
Mention changes
git-svn-id: https://svn.dealii.org/trunk@29473
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kronbichler [Tue, 7 May 2013 09:50:33 +0000 (09:50 +0000)]
Fix early success in Bicgstab: Should not scale residual by norm of rhs vector b because that should be - if at all - be part of the termination tolerance. This should fix test case lac/bicgstab_large. Adjust output in a few Bicgstab tests.
git-svn-id: https://svn.dealii.org/trunk@29472
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kronbichler [Tue, 7 May 2013 07:57:38 +0000 (07:57 +0000)]
Remove obsolete include file
git-svn-id: https://svn.dealii.org/trunk@29471
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kronbichler [Tue, 7 May 2013 07:01:29 +0000 (07:01 +0000)]
Make test work
git-svn-id: https://svn.dealii.org/trunk@29470
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bangerth [Mon, 6 May 2013 22:18:42 +0000 (22:18 +0000)]
Instantiate FETools::interpolate for general vector types.
git-svn-id: https://svn.dealii.org/trunk@29468
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kronbichler [Mon, 6 May 2013 20:17:53 +0000 (20:17 +0000)]
Add expected output
git-svn-id: https://svn.dealii.org/trunk@29467
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kronbichler [Mon, 6 May 2013 20:16:54 +0000 (20:16 +0000)]
Add a test (that currently fails) showing that early success in Bicgstab solver is not handled correctly when large numbers are present
git-svn-id: https://svn.dealii.org/trunk@29466
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kronbichler [Mon, 6 May 2013 19:52:31 +0000 (19:52 +0000)]
Save one temporary vector in Bicgstab.
git-svn-id: https://svn.dealii.org/trunk@29465
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kronbichler [Mon, 6 May 2013 19:51:19 +0000 (19:51 +0000)]
Choose to adaptively re-orthogonalize in GMRES, which cuts the number of inner products into one half for most applications. Add proper tests.
git-svn-id: https://svn.dealii.org/trunk@29464
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kronbichler [Mon, 6 May 2013 19:51:08 +0000 (19:51 +0000)]
Actually test right preconditioning.
git-svn-id: https://svn.dealii.org/trunk@29463
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bangerth [Mon, 6 May 2013 02:43:55 +0000 (02:43 +0000)]
List Kevin Dugan's thesis.
git-svn-id: https://svn.dealii.org/trunk@29462
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bangerth [Mon, 6 May 2013 02:40:05 +0000 (02:40 +0000)]
Add Guido's address.
git-svn-id: https://svn.dealii.org/trunk@29460
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bangerth [Mon, 6 May 2013 02:39:26 +0000 (02:39 +0000)]
Minor edits.
git-svn-id: https://svn.dealii.org/trunk@29459
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bangerth [Sun, 5 May 2013 14:07:48 +0000 (14:07 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29457
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maier [Sat, 4 May 2013 08:56:07 +0000 (08:56 +0000)]
CMake: Also install deal.tag
git-svn-id: https://svn.dealii.org/trunk@29454
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turcksin [Fri, 3 May 2013 20:23:03 +0000 (20:23 +0000)]
Temporary fix for compress. Ideally all the ::dealii::VectorOperation::unknown will be taken out.
git-svn-id: https://svn.dealii.org/trunk@29449
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turcksin [Fri, 3 May 2013 15:28:59 +0000 (15:28 +0000)]
Delete useless std::cout.
git-svn-id: https://svn.dealii.org/trunk@29447
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heister [Fri, 3 May 2013 15:15:18 +0000 (15:15 +0000)]
fix Trilinos SparseMatrix adding instead of inserting entries in parallel. Also leave a todo.
git-svn-id: https://svn.dealii.org/trunk@29446
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heister [Fri, 3 May 2013 15:08:16 +0000 (15:08 +0000)]
clean up test
git-svn-id: https://svn.dealii.org/trunk@29445
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heister [Fri, 3 May 2013 14:48:13 +0000 (14:48 +0000)]
make test fail (bug in Trilinos)
git-svn-id: https://svn.dealii.org/trunk@29444
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bangerth [Fri, 3 May 2013 02:10:28 +0000 (02:10 +0000)]
Add one.
git-svn-id: https://svn.dealii.org/trunk@29443
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young [Thu, 2 May 2013 20:18:40 +0000 (20:18 +0000)]
Build in assertions...
git-svn-id: https://svn.dealii.org/trunk@29432
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bangerth [Thu, 2 May 2013 15:25:44 +0000 (15:25 +0000)]
Do not use std::numeric_limits on enum types -- max() is always zero
in that case...
git-svn-id: https://svn.dealii.org/trunk@29431
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heister [Thu, 2 May 2013 14:20:14 +0000 (14:20 +0000)]
fix 2d test
git-svn-id: https://svn.dealii.org/trunk@29429
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heister [Thu, 2 May 2013 14:18:39 +0000 (14:18 +0000)]
fix p4est assert from yesterday
git-svn-id: https://svn.dealii.org/trunk@29428
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kronbichler [Thu, 2 May 2013 13:50:37 +0000 (13:50 +0000)]
Enable multithreading.
git-svn-id: https://svn.dealii.org/trunk@29427
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kronbichler [Thu, 2 May 2013 13:48:22 +0000 (13:48 +0000)]
Enable multithreading by default.
git-svn-id: https://svn.dealii.org/trunk@29426
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heister [Thu, 2 May 2013 01:28:28 +0000 (01:28 +0000)]
add 2d test (does not trigger the right error)
git-svn-id: https://svn.dealii.org/trunk@29425
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heister [Thu, 2 May 2013 01:12:44 +0000 (01:12 +0000)]
add test for p4est max refinement level
git-svn-id: https://svn.dealii.org/trunk@29424
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heister [Thu, 2 May 2013 01:12:05 +0000 (01:12 +0000)]
throw exception if p4est maximum refinement level is reached
git-svn-id: https://svn.dealii.org/trunk@29423
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bangerth [Wed, 1 May 2013 23:47:07 +0000 (23:47 +0000)]
Fix poor markup.
git-svn-id: https://svn.dealii.org/trunk@29422
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bangerth [Wed, 1 May 2013 23:03:42 +0000 (23:03 +0000)]
More comments.
git-svn-id: https://svn.dealii.org/trunk@29421
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bangerth [Wed, 1 May 2013 23:01:59 +0000 (23:01 +0000)]
Better formatting of documentation.
git-svn-id: https://svn.dealii.org/trunk@29420
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bangerth [Wed, 1 May 2013 21:24:00 +0000 (21:24 +0000)]
Provide better documentation.
git-svn-id: https://svn.dealii.org/trunk@29419
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bangerth [Wed, 1 May 2013 12:35:10 +0000 (12:35 +0000)]
Comment on the fact that VTK is a legacy format. People should be using VTU instead.
git-svn-id: https://svn.dealii.org/trunk@29417
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bangerth [Tue, 30 Apr 2013 19:10:25 +0000 (19:10 +0000)]
ParameterHandler::set(., bool) which was broken, see bug #49.
git-svn-id: https://svn.dealii.org/trunk@29415
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bangerth [Tue, 30 Apr 2013 16:48:34 +0000 (16:48 +0000)]
Rename variable in inner scope to avoid clash with outer scope.
git-svn-id: https://svn.dealii.org/trunk@29414
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bangerth [Tue, 30 Apr 2013 16:48:16 +0000 (16:48 +0000)]
Do operation in the correct type.
git-svn-id: https://svn.dealii.org/trunk@29413
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bangerth [Tue, 30 Apr 2013 16:38:38 +0000 (16:38 +0000)]
Add missing include files.
git-svn-id: https://svn.dealii.org/trunk@29412
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bangerth [Tue, 30 Apr 2013 16:03:02 +0000 (16:03 +0000)]
Remove accidental double-semicolons (is that a colon, then?).
git-svn-id: https://svn.dealii.org/trunk@29410
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kronbichler [Tue, 30 Apr 2013 14:56:37 +0000 (14:56 +0000)]
Make partial initialization work properly, including a minimum functionality in case of no index initializations.
git-svn-id: https://svn.dealii.org/trunk@29408
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kronbichler [Tue, 30 Apr 2013 14:11:19 +0000 (14:11 +0000)]
Simplify FullMatrix::Tmmult and FullMatrix::mTmult in case the two input matrices are the same.
git-svn-id: https://svn.dealii.org/trunk@29406
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maier [Tue, 30 Apr 2013 09:11:08 +0000 (09:11 +0000)]
CMake: Fix a typo that prevented user supplied shared linker flags from being used
git-svn-id: https://svn.dealii.org/trunk@29405
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maier [Tue, 30 Apr 2013 07:34:23 +0000 (07:34 +0000)]
CMake: Small cleanup in check_*, take over r29403 to trunk
git-svn-id: https://svn.dealii.org/trunk@29404
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bangerth [Tue, 30 Apr 2013 03:37:40 +0000 (03:37 +0000)]
Suppress several more of Intel's warnings.
git-svn-id: https://svn.dealii.org/trunk@29402
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heister [Mon, 29 Apr 2013 20:34:30 +0000 (20:34 +0000)]
add my email
git-svn-id: https://svn.dealii.org/trunk@29401
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bangerth [Mon, 29 Apr 2013 16:05:18 +0000 (16:05 +0000)]
Link to video lectures. Reshuffle links so that the most frequently used ones are at the top.
git-svn-id: https://svn.dealii.org/trunk@29400
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