]>
https://gitweb.dealii.org/ - dealii-svn.git/log
kanschat [Sat, 9 Jul 2011 17:03:06 +0000 (17:03 +0000)]
get_data cannot return null pointer
git-svn-id: https://svn.dealii.org/trunk@23937
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kanschat [Sat, 9 Jul 2011 17:02:27 +0000 (17:02 +0000)]
new functions for setting face and subfaces without deleting matrices
git-svn-id: https://svn.dealii.org/trunk@23936
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bangerth [Fri, 8 Jul 2011 01:36:31 +0000 (01:36 +0000)]
Replace a quadratic algorithm by a linear one. This greatly accelerates a good number of the tests we have. For example, deal.II/grid_in and deal.II/grid_in_msh_version_2 speed up from several minutes to just a few seconds.
git-svn-id: https://svn.dealii.org/trunk@23935
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bangerth [Fri, 8 Jul 2011 01:02:06 +0000 (01:02 +0000)]
Accelerate the central part of the reordering algorithm by a factor of
four. This line
std::transform(inquads.begin(),inquads.end(), std::back_inserter(mquads),
std::bind2nd(MQuad::MakeQuad(),sides) );
takes up almost the entire time since the call to MakeQuad is linear in the
number of edges and is called a linear number of times -- making the whole
thing quadratic. This may not have been such a big deal when we used the
regular libstdc++ library, but since we now test with the debug version, it
takes positively forever. The patch changes the way we work in MakeQuad:
instead of calling lower_bound four times, we now do the equivalent work only
once and check for all four indices at the same time.
git-svn-id: https://svn.dealii.org/trunk@23934
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bangerth [Fri, 8 Jul 2011 00:11:45 +0000 (00:11 +0000)]
Abort the program at the moment since it locks up and we don't have a way to
fix it at present.
git-svn-id: https://svn.dealii.org/trunk@23933
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bangerth [Thu, 7 Jul 2011 21:53:40 +0000 (21:53 +0000)]
Toss section on Trilinos versions prior to 10.0.
git-svn-id: https://svn.dealii.org/trunk@23932
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heister [Thu, 7 Jul 2011 19:40:51 +0000 (19:40 +0000)]
Add GridGenerator::quarter_hyper_shell. Only implemented in 2d for now.
git-svn-id: https://svn.dealii.org/trunk@23931
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heister [Thu, 7 Jul 2011 19:37:17 +0000 (19:37 +0000)]
Fix example in documentation: control is no longer public.
git-svn-id: https://svn.dealii.org/trunk@23930
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bangerth [Thu, 7 Jul 2011 14:53:20 +0000 (14:53 +0000)]
Do not access the first element if the vector is empty.
git-svn-id: https://svn.dealii.org/trunk@23929
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bangerth [Thu, 7 Jul 2011 14:50:22 +0000 (14:50 +0000)]
Do not access the first element if the vector is empty.
git-svn-id: https://svn.dealii.org/trunk@23928
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bangerth [Thu, 7 Jul 2011 14:46:31 +0000 (14:46 +0000)]
Adjust, not that count_dofs_per_component is available for a templated DoFHandler argument.
git-svn-id: https://svn.dealii.org/trunk@23927
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bangerth [Thu, 7 Jul 2011 11:02:40 +0000 (11:02 +0000)]
Make compile also with MPI enabled.
git-svn-id: https://svn.dealii.org/trunk@23926
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goll [Wed, 6 Jul 2011 16:31:11 +0000 (16:31 +0000)]
Rename test and add a new one that verifies FECollection objects with more than one element.
git-svn-id: https://svn.dealii.org/trunk@23925
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goll [Wed, 6 Jul 2011 16:14:35 +0000 (16:14 +0000)]
Implement DoFTools::count_dofs_per_component also for hp::DoFhandler.
git-svn-id: https://svn.dealii.org/trunk@23924
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bangerth [Wed, 6 Jul 2011 10:52:37 +0000 (10:52 +0000)]
Close the ConstraintMatrix before use.
git-svn-id: https://svn.dealii.org/trunk@23923
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bangerth [Wed, 6 Jul 2011 09:43:50 +0000 (09:43 +0000)]
Temporarily increase timeout after using the libstdc++ debug mode. I don't
want to keep this bigger timeout long term but I'd like to see in the
testsuite runs which tests are genuine failures and which are just caused by
longer runtimes.
git-svn-id: https://svn.dealii.org/trunk@23922
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bangerth [Wed, 6 Jul 2011 07:45:06 +0000 (07:45 +0000)]
Close the constraint matrix.
git-svn-id: https://svn.dealii.org/trunk@23921
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bangerth [Wed, 6 Jul 2011 07:44:02 +0000 (07:44 +0000)]
Add an assertion without which we probably compute garbage.
git-svn-id: https://svn.dealii.org/trunk@23920
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kanschat [Tue, 5 Jul 2011 19:38:30 +0000 (19:38 +0000)]
start fixing FE_Face
git-svn-id: https://svn.dealii.org/trunk@23919
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bangerth [Mon, 4 Jul 2011 20:38:13 +0000 (20:38 +0000)]
Don't access an element of an array if the array has size zero.
git-svn-id: https://svn.dealii.org/trunk@23918
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bangerth [Mon, 4 Jul 2011 16:38:59 +0000 (16:38 +0000)]
Allow calling join() on a thread object more than once.
git-svn-id: https://svn.dealii.org/trunk@23917
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bangerth [Mon, 4 Jul 2011 16:32:09 +0000 (16:32 +0000)]
Avoid accessing element past the end.
git-svn-id: https://svn.dealii.org/trunk@23916
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bangerth [Sun, 3 Jul 2011 03:12:53 +0000 (03:12 +0000)]
Remove the test that we produce an exception for invalid accesses. This can't be tested in any reasonable way since in the testsuite we continue running tests even after exceptions, which then triggers an out-of-bounds access and a failure of the test in the debug version of libstdc++.
git-svn-id: https://svn.dealii.org/trunk@23915
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bangerth [Sat, 2 Jul 2011 22:34:58 +0000 (22:34 +0000)]
Make work again.
git-svn-id: https://svn.dealii.org/trunk@23914
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bangerth [Sat, 2 Jul 2011 21:34:53 +0000 (21:34 +0000)]
Fix non-sensical placement of a join_all statement.
git-svn-id: https://svn.dealii.org/trunk@23913
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bangerth [Fri, 1 Jul 2011 19:05:54 +0000 (19:05 +0000)]
Ensure that a thread can indeed be joined. This doesn't always appear
to be the case, and a friendly assertion is better than a hard
exception that is thrown from the OS and doesn't contain much information.
git-svn-id: https://svn.dealii.org/trunk@23912
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kanschat [Fri, 1 Jul 2011 16:30:45 +0000 (16:30 +0000)]
Add to module Integrators
git-svn-id: https://svn.dealii.org/trunk@23911
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bangerth [Fri, 1 Jul 2011 15:39:58 +0000 (15:39 +0000)]
Add Threads::Thread::valid.
git-svn-id: https://svn.dealii.org/trunk@23910
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bangerth [Fri, 1 Jul 2011 15:39:42 +0000 (15:39 +0000)]
Add Threads::Thread::valid.
git-svn-id: https://svn.dealii.org/trunk@23909
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bangerth [Fri, 1 Jul 2011 15:13:15 +0000 (15:13 +0000)]
Fix typos.
git-svn-id: https://svn.dealii.org/trunk@23908
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bangerth [Fri, 1 Jul 2011 15:03:57 +0000 (15:03 +0000)]
Fix typos.
git-svn-id: https://svn.dealii.org/trunk@23907
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bangerth [Fri, 1 Jul 2011 14:59:13 +0000 (14:59 +0000)]
Don't write stuff into a big file that we're never going to read again. It's also not safe in the presence of having the same tests run multiple times at the same time with parallel make, since multiple tests may write to the same file.
git-svn-id: https://svn.dealii.org/trunk@23906
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bangerth [Fri, 1 Jul 2011 14:48:58 +0000 (14:48 +0000)]
Update after the change to computing no_normal_flux.
git-svn-id: https://svn.dealii.org/trunk@23905
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bangerth [Fri, 1 Jul 2011 14:36:09 +0000 (14:36 +0000)]
Avoid accessing invalid elements of an array.
git-svn-id: https://svn.dealii.org/trunk@23904
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bangerth [Fri, 1 Jul 2011 14:06:18 +0000 (14:06 +0000)]
Undo last change and document why the code that looked dead was in fact useful.
git-svn-id: https://svn.dealii.org/trunk@23903
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bangerth [Fri, 1 Jul 2011 03:36:17 +0000 (03:36 +0000)]
Avoid accessing elements past the end.
git-svn-id: https://svn.dealii.org/trunk@23902
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bangerth [Fri, 1 Jul 2011 03:10:05 +0000 (03:10 +0000)]
Fix a problem where we access an element past the end of the array because we
call a function recursively and accidentally step on our own foot.
git-svn-id: https://svn.dealii.org/trunk@23901
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kanschat [Fri, 1 Jul 2011 02:37:39 +0000 (02:37 +0000)]
remove unused variable
git-svn-id: https://svn.dealii.org/trunk@23900
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kanschat [Fri, 1 Jul 2011 02:14:01 +0000 (02:14 +0000)]
Replace wrong loop bounds
git-svn-id: https://svn.dealii.org/trunk@23899
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bangerth [Fri, 1 Jul 2011 00:27:42 +0000 (00:27 +0000)]
OK, that didn't work :-(
git-svn-id: https://svn.dealii.org/trunk@23898
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bangerth [Fri, 1 Jul 2011 00:24:05 +0000 (00:24 +0000)]
Use a better way to copy stuff.
git-svn-id: https://svn.dealii.org/trunk@23897
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bangerth [Fri, 1 Jul 2011 00:14:00 +0000 (00:14 +0000)]
Only access elements of a vector if it is not empty.
git-svn-id: https://svn.dealii.org/trunk@23896
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bangerth [Fri, 1 Jul 2011 00:03:09 +0000 (00:03 +0000)]
Do not access the element-past-the-end of a vector.
git-svn-id: https://svn.dealii.org/trunk@23895
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bangerth [Thu, 30 Jun 2011 23:53:43 +0000 (23:53 +0000)]
Use a more robust version of denoting the null pointer in this context.
git-svn-id: https://svn.dealii.org/trunk@23894
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bangerth [Thu, 30 Jun 2011 23:47:29 +0000 (23:47 +0000)]
Be more careful accessing the data array of a Table object if said Table
object is empty. Also add an assertion in one other place.
git-svn-id: https://svn.dealii.org/trunk@23893
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bangerth [Thu, 30 Jun 2011 23:05:51 +0000 (23:05 +0000)]
Compare iterators from the same container.
git-svn-id: https://svn.dealii.org/trunk@23892
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bangerth [Thu, 30 Jun 2011 23:00:25 +0000 (23:00 +0000)]
Fix another such place.
git-svn-id: https://svn.dealii.org/trunk@23891
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bangerth [Thu, 30 Jun 2011 21:14:12 +0000 (21:14 +0000)]
Don't compute stuff we never use. In particular, don't create variables then
access beyond their end.
git-svn-id: https://svn.dealii.org/trunk@23890
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bangerth [Thu, 30 Jun 2011 21:11:42 +0000 (21:11 +0000)]
Compute the size of a std::vector without dereferencing the end iterator.
git-svn-id: https://svn.dealii.org/trunk@23889
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bangerth [Thu, 30 Jun 2011 21:04:40 +0000 (21:04 +0000)]
Only define preprocessor symbol if not already defined.
git-svn-id: https://svn.dealii.org/trunk@23888
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bangerth [Thu, 30 Jun 2011 12:20:15 +0000 (12:20 +0000)]
Verify that the output that changed with yesterday's fix is correct.
git-svn-id: https://svn.dealii.org/trunk@23887
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bangerth [Thu, 30 Jun 2011 00:01:47 +0000 (00:01 +0000)]
Replace two naked 'throw ExcInternalError()' by the corresponding AssertThrow so that we get location information printed in the output.
git-svn-id: https://svn.dealii.org/trunk@23886
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bangerth [Wed, 29 Jun 2011 23:49:41 +0000 (23:49 +0000)]
Use proper syntax in compile test.
git-svn-id: https://svn.dealii.org/trunk@23885
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bangerth [Wed, 29 Jun 2011 23:37:05 +0000 (23:37 +0000)]
Work around an awkward problem: when using mappings of degree 4, we have enough roundoff accumulating that we get into trouble with constraints that are cyclic. Fix this by introducing a normalization step in the computation of normal vectors when sorting out normal fluxes.
git-svn-id: https://svn.dealii.org/trunk@23884
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bangerth [Wed, 29 Jun 2011 22:18:11 +0000 (22:18 +0000)]
Detect common problem with Sacado_cmath.hpp and link to a solution.
git-svn-id: https://svn.dealii.org/trunk@23883
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bangerth [Wed, 29 Jun 2011 21:16:44 +0000 (21:16 +0000)]
Update one.
git-svn-id: https://svn.dealii.org/trunk@23882
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bangerth [Wed, 29 Jun 2011 20:09:50 +0000 (20:09 +0000)]
Better doxygen markup.
git-svn-id: https://svn.dealii.org/trunk@23881
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bangerth [Wed, 29 Jun 2011 18:22:18 +0000 (18:22 +0000)]
Add a note to a comment.
git-svn-id: https://svn.dealii.org/trunk@23880
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bangerth [Wed, 29 Jun 2011 18:14:25 +0000 (18:14 +0000)]
Only the 3d case is affected.
git-svn-id: https://svn.dealii.org/trunk@23879
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bangerth [Wed, 29 Jun 2011 17:17:08 +0000 (17:17 +0000)]
Reduce test to the minimum.
git-svn-id: https://svn.dealii.org/trunk@23878
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bangerth [Wed, 29 Jun 2011 17:04:32 +0000 (17:04 +0000)]
Auto-detect the Trilinos sub-libs we need to link with and their order.
git-svn-id: https://svn.dealii.org/trunk@23877
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kanschat [Tue, 28 Jun 2011 18:21:51 +0000 (18:21 +0000)]
remove obsolete keyword
git-svn-id: https://svn.dealii.org/trunk@23876
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kanschat [Tue, 28 Jun 2011 18:17:53 +0000 (18:17 +0000)]
Header
git-svn-id: https://svn.dealii.org/trunk@23875
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bangerth [Tue, 28 Jun 2011 03:37:38 +0000 (03:37 +0000)]
Augment documentation. Add a guarantee about the first shape function that is also tested in the new fe/dgp_01 testcase.
git-svn-id: https://svn.dealii.org/trunk@23874
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bangerth [Tue, 28 Jun 2011 03:21:07 +0000 (03:21 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@23873
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kronbichler [Mon, 27 Jun 2011 17:34:23 +0000 (17:34 +0000)]
Work around compiler warnings in boost library.
git-svn-id: https://svn.dealii.org/trunk@23872
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kronbichler [Mon, 27 Jun 2011 16:34:39 +0000 (16:34 +0000)]
Fix memory consumption of std::vector<T> with more than 4G.
git-svn-id: https://svn.dealii.org/trunk@23871
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kronbichler [Mon, 27 Jun 2011 16:33:52 +0000 (16:33 +0000)]
Fix typo in documentation.
git-svn-id: https://svn.dealii.org/trunk@23870
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kronbichler [Mon, 27 Jun 2011 16:33:32 +0000 (16:33 +0000)]
Omit unused variables.
git-svn-id: https://svn.dealii.org/trunk@23869
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kronbichler [Mon, 27 Jun 2011 16:32:10 +0000 (16:32 +0000)]
Test ConstraintMatrix::merge() for constraint matrices localized by an IndexSet (same IndexSet on both CM).
git-svn-id: https://svn.dealii.org/trunk@23868
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kronbichler [Mon, 27 Jun 2011 16:31:46 +0000 (16:31 +0000)]
Implement ConstraintMatrix::merge() for constraint matrices localized by an IndexSet (same IndexSet on both CM).
git-svn-id: https://svn.dealii.org/trunk@23867
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heister [Sun, 26 Jun 2011 21:07:01 +0000 (21:07 +0000)]
add failing testcase for no_normal_flux constraints in 3d with higher order mapping failing.
git-svn-id: https://svn.dealii.org/trunk@23866
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bangerth [Sun, 26 Jun 2011 17:33:12 +0000 (17:33 +0000)]
New test that currently fails.
git-svn-id: https://svn.dealii.org/trunk@23865
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bangerth [Sun, 26 Jun 2011 17:21:24 +0000 (17:21 +0000)]
Make test compile and run. It does abort now, though...
git-svn-id: https://svn.dealii.org/trunk@23864
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bangerth [Sun, 26 Jun 2011 03:18:01 +0000 (03:18 +0000)]
One more test.
git-svn-id: https://svn.dealii.org/trunk@23863
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bangerth [Sun, 26 Jun 2011 03:07:22 +0000 (03:07 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@23862
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bangerth [Sun, 26 Jun 2011 00:19:40 +0000 (00:19 +0000)]
Test works after all -- the deadlock was due to the fact that I called x.l2_norm() only for some processors.
git-svn-id: https://svn.dealii.org/trunk@23861
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bangerth [Sun, 26 Jun 2011 00:04:29 +0000 (00:04 +0000)]
Also set SERVER_BASED_SEARCH to NO.
git-svn-id: https://svn.dealii.org/trunk@23860
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bangerth [Sun, 26 Jun 2011 00:01:40 +0000 (00:01 +0000)]
Set TEMPLATE_RELATIONS to YES.
git-svn-id: https://svn.dealii.org/trunk@23859
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bangerth [Fri, 24 Jun 2011 03:48:46 +0000 (03:48 +0000)]
Add another one.
git-svn-id: https://svn.dealii.org/trunk@23858
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bangerth [Fri, 24 Jun 2011 01:31:49 +0000 (01:31 +0000)]
Add a new test. This one segfaults on my laptop, let's see what it does on the autotester.
git-svn-id: https://svn.dealii.org/trunk@23857
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bangerth [Fri, 24 Jun 2011 01:16:42 +0000 (01:16 +0000)]
Remove static_casts that are now no longer necessary since parallel::distributed::DoFHandler has been merged into the global ::DoFHandler.
git-svn-id: https://svn.dealii.org/trunk@23856
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bangerth [Fri, 24 Jun 2011 01:11:09 +0000 (01:11 +0000)]
Use '-Wl,-rpath,' instead of '-Wl,-rpath ' (note the comma instead of the space). It's quite mysterious how this worked in the first place for so long.
git-svn-id: https://svn.dealii.org/trunk@23855
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bangerth [Thu, 23 Jun 2011 17:36:26 +0000 (17:36 +0000)]
Make our lives a bit easier in counting how many variables we output.
git-svn-id: https://svn.dealii.org/trunk@23854
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ferguson [Thu, 23 Jun 2011 14:30:20 +0000 (14:30 +0000)]
Add more details to the Refinement During Timesteps section
git-svn-id: https://svn.dealii.org/trunk@23853
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bonito [Thu, 23 Jun 2011 14:25:59 +0000 (14:25 +0000)]
Added instantiation of PETScWrappers::MPI:Vector in MappingQEulerian
git-svn-id: https://svn.dealii.org/trunk@23852
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bangerth [Wed, 22 Jun 2011 20:03:00 +0000 (20:03 +0000)]
Experiment with adding a search engine to the doxygen pages. It
doesn't quite work on my local machine, so see how it comes out on the
server.
git-svn-id: https://svn.dealii.org/trunk@23851
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bangerth [Wed, 22 Jun 2011 12:44:28 +0000 (12:44 +0000)]
Update documentation in a number of places.
git-svn-id: https://svn.dealii.org/trunk@23850
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bangerth [Tue, 21 Jun 2011 17:31:28 +0000 (17:31 +0000)]
Add something to the documentation.
git-svn-id: https://svn.dealii.org/trunk@23849
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buerg [Tue, 21 Jun 2011 09:02:33 +0000 (09:02 +0000)]
Remove wrong comment.
git-svn-id: https://svn.dealii.org/trunk@23848
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bangerth [Mon, 20 Jun 2011 13:53:43 +0000 (13:53 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@23847
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bangerth [Mon, 20 Jun 2011 13:41:29 +0000 (13:41 +0000)]
One more.
git-svn-id: https://svn.dealii.org/trunk@23846
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bangerth [Mon, 20 Jun 2011 13:23:08 +0000 (13:23 +0000)]
Add a master's thesis.
git-svn-id: https://svn.dealii.org/trunk@23845
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kanschat [Sat, 18 Jun 2011 03:32:33 +0000 (03:32 +0000)]
remove obsolete constructor
git-svn-id: https://svn.dealii.org/trunk@23844
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kanschat [Fri, 17 Jun 2011 23:23:15 +0000 (23:23 +0000)]
undo erroneous commit
git-svn-id: https://svn.dealii.org/trunk@23843
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kanschat [Fri, 17 Jun 2011 23:17:04 +0000 (23:17 +0000)]
test permutation in RelaxationBlock
git-svn-id: https://svn.dealii.org/trunk@23842
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kanschat [Fri, 17 Jun 2011 23:15:54 +0000 (23:15 +0000)]
fix order in SSOR
git-svn-id: https://svn.dealii.org/trunk@23841
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kanschat [Fri, 17 Jun 2011 22:26:30 +0000 (22:26 +0000)]
implement ADI, awaits testing
git-svn-id: https://svn.dealii.org/trunk@23840
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kanschat [Fri, 17 Jun 2011 21:45:56 +0000 (21:45 +0000)]
stop copying BlockList
git-svn-id: https://svn.dealii.org/trunk@23839
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kanschat [Fri, 17 Jun 2011 21:41:21 +0000 (21:41 +0000)]
push block list into AdditionalData
git-svn-id: https://svn.dealii.org/trunk@23838
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