]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoadded least squares routine and tests
Benjamin Brands [Mon, 15 Jan 2018 13:29:07 +0000 (14:29 +0100)]
added least squares routine and tests

6 years agoadded SVD computation and tests
Benjamin Brands [Mon, 15 Jan 2018 16:52:35 +0000 (17:52 +0100)]
added SVD computation and tests

6 years agochanged eigenvalue/eigenvector computation
Benjamin Brands [Wed, 10 Jan 2018 10:35:07 +0000 (11:35 +0100)]
changed eigenvalue/eigenvector computation

6 years agoMerge pull request #5719 from bangerth/doc-update
Daniel Arndt [Mon, 15 Jan 2018 08:47:40 +0000 (09:47 +0100)]
Merge pull request #5719 from bangerth/doc-update

Update some comments around renumbering DoFs.

6 years agoMerge pull request #5730 from masterleinad/clang-tidy-new__3
Wolfgang Bangerth [Sun, 14 Jan 2018 15:49:57 +0000 (08:49 -0700)]
Merge pull request #5730 from masterleinad/clang-tidy-new__3

Make some variables const (references)

6 years agoMerge pull request #5729 from masterleinad/clang-tidy-new_2
Jean-Paul Pelteret [Sun, 14 Jan 2018 08:02:11 +0000 (09:02 +0100)]
Merge pull request #5729 from masterleinad/clang-tidy-new_2

Use nullptr instead of 0 or NULL

6 years agoMake some variables const (references) 5730/head
Daniel Arndt [Sat, 13 Jan 2018 18:39:08 +0000 (19:39 +0100)]
Make some variables const (references)

6 years agoMerge pull request #5704 from BenBrands/extend_scalapack
Daniel Arndt [Sat, 13 Jan 2018 21:31:46 +0000 (22:31 +0100)]
Merge pull request #5704 from BenBrands/extend_scalapack

 add template wrappers for ScaLAPACK functions

6 years agoUse nullptr 5729/head
Daniel Arndt [Sat, 13 Jan 2018 16:37:31 +0000 (17:37 +0100)]
Use nullptr

6 years agoMerge pull request #5722 from eldarkh/add-fe-rt-bubbles
Daniel Arndt [Sat, 13 Jan 2018 01:51:38 +0000 (02:51 +0100)]
Merge pull request #5722 from eldarkh/add-fe-rt-bubbles

New Finite Element RT+Bubbles (PR #4540 part II)

6 years agoMerge pull request #5726 from bangerth/automatic-memory
Denis Davydov [Fri, 12 Jan 2018 21:05:46 +0000 (22:05 +0100)]
Merge pull request #5726 from bangerth/automatic-memory

Use automatic memory management, rather than doing it by hand.

6 years agoMerge pull request #5717 from masterleinad/copy_distribute_dofs
Wolfgang Bangerth [Fri, 12 Jan 2018 20:46:41 +0000 (13:46 -0700)]
Merge pull request #5717 from masterleinad/copy_distribute_dofs

Make sure distribute_dofs doesn't copy unnecessarily

6 years agoNew Finite Element, RT-Bubbles 5722/head
Eldar Khattatov [Fri, 12 Jan 2018 19:20:14 +0000 (14:20 -0500)]
New Finite Element, RT-Bubbles

6 years agoUse automatic memory management, rather than doing it by hand. 5726/head
Wolfgang Bangerth [Fri, 12 Jan 2018 18:12:08 +0000 (11:12 -0700)]
Use automatic memory management, rather than doing it by hand.

6 years agoMerge pull request #5725 from bangerth/doc-update-2
Luca Heltai [Fri, 12 Jan 2018 15:28:10 +0000 (16:28 +0100)]
Merge pull request #5725 from bangerth/doc-update-2

Fix a formula that trips up doxygen.

6 years agoFix a formula that trips up doxygen. 5725/head
Wolfgang Bangerth [Fri, 12 Jan 2018 15:25:24 +0000 (08:25 -0700)]
Fix a formula that trips up doxygen.

6 years agoMerge pull request #5721 from bangerth/add-test
Jean-Paul Pelteret [Fri, 12 Jan 2018 07:49:15 +0000 (08:49 +0100)]
Merge pull request #5721 from bangerth/add-test

Add another test.

6 years agoMerge pull request #5724 from bartniday/patch-1
Wolfgang Bangerth [Fri, 12 Jan 2018 00:43:31 +0000 (18:43 -0600)]
Merge pull request #5724 from bartniday/patch-1

Fix grammar in parameter description

6 years agoFix grammar in parameter description 5724/head
bartniday [Fri, 12 Jan 2018 00:33:42 +0000 (16:33 -0800)]
Fix grammar in parameter description

6 years agoMerge pull request #5720 from luca-heltai/bug-mapping
Luca Heltai [Thu, 11 Jan 2018 16:06:40 +0000 (17:06 +0100)]
Merge pull request #5720 from luca-heltai/bug-mapping

Fix bug in MappingFEField.

6 years agoMerge pull request #5723 from bangerth/fix-grammar
Luca Heltai [Thu, 11 Jan 2018 14:58:12 +0000 (15:58 +0100)]
Merge pull request #5723 from bangerth/fix-grammar

Use complete grammar.

6 years agoUse complete grammar. 5723/head
Wolfgang Bangerth [Thu, 11 Jan 2018 14:56:42 +0000 (07:56 -0700)]
Use complete grammar.

6 years agoAdd another test. 5721/head
Wolfgang Bangerth [Thu, 11 Jan 2018 14:11:14 +0000 (07:11 -0700)]
Add another test.

6 years agoMake sure distribute_dofs doesn't copy unnecessarily 5717/head
Daniel Arndt [Wed, 10 Jan 2018 23:49:19 +0000 (00:49 +0100)]
Make sure distribute_dofs doesn't copy unnecessarily

6 years agoRemoved smart pointer to dh.get_fe() 5720/head
Luca Heltai [Thu, 11 Jan 2018 09:18:09 +0000 (10:18 +0100)]
Removed smart pointer to dh.get_fe()

6 years agoUpdate some comments around renumbering DoFs. 5719/head
Wolfgang Bangerth [Thu, 11 Jan 2018 02:40:47 +0000 (19:40 -0700)]
Update some comments around renumbering DoFs.

6 years agoMerge pull request #5658 from luca-heltai/simplex-quad
Daniel Arndt [Wed, 10 Jan 2018 21:06:56 +0000 (22:06 +0100)]
Merge pull request #5658 from luca-heltai/simplex-quad

Simplex quadratures and their utilities.

6 years agoMerge pull request #5709 from eldarkh/add-poly-rt-bubbles
Daniel Arndt [Wed, 10 Jan 2018 21:06:21 +0000 (22:06 +0100)]
Merge pull request #5709 from eldarkh/add-poly-rt-bubbles

New polynomial space RT+Bubbles (PR #4540 part I)

6 years agoNew polynomial space RT+Bubbles, final changes 5709/head
Eldar Khattatov [Wed, 10 Jan 2018 17:08:08 +0000 (12:08 -0500)]
New polynomial space RT+Bubbles, final changes

6 years agoMerge pull request #5712 from masterleinad/precice_p4est
Daniel Arndt [Wed, 10 Jan 2018 16:49:28 +0000 (17:49 +0100)]
Merge pull request #5712 from masterleinad/precice_p4est

Make the instructions for the p4est installation script more precise

6 years agoMake the instructions for the p4est installation script more precise 5712/head
Daniel Arndt [Wed, 10 Jan 2018 00:50:30 +0000 (01:50 +0100)]
Make the instructions for the p4est installation script more precise

6 years agoMerge pull request #5710 from masterleinad/simplify_normal_spherical_2
Wolfgang Bangerth [Wed, 10 Jan 2018 16:43:13 +0000 (10:43 -0600)]
Merge pull request #5710 from masterleinad/simplify_normal_spherical_2

Update documentation by using Manifold instead of Boundary

6 years agoMerge pull request #5713 from vishalkenchan/suppress_zoltan_phg_warnings
Daniel Arndt [Wed, 10 Jan 2018 13:39:04 +0000 (14:39 +0100)]
Merge pull request #5713 from vishalkenchan/suppress_zoltan_phg_warnings

suppress PHG warning saying: PHG_EDGE_SIZE_THRESHOLD is low

6 years agoupdating copy-right headers 5713/head
vishalkenchan [Wed, 10 Jan 2018 11:09:35 +0000 (12:09 +0100)]
updating copy-right headers

6 years agoadd ScaLAPACKMAtrix::copy_to(ScaLAPACKMatrix &dest) 5704/head
Benjamin Brands [Wed, 10 Jan 2018 10:47:52 +0000 (11:47 +0100)]
add ScaLAPACKMAtrix::copy_to(ScaLAPACKMatrix &dest)

6 years agodo not free MPI_COMM_NULL communicator in ProcessGrid
Benjamin Brands [Wed, 10 Jan 2018 10:46:27 +0000 (11:46 +0100)]
do not free MPI_COMM_NULL communicator in ProcessGrid

6 years agoadd template wrappers for ScaLAPACK functions and introduce support for float
Benjamin Brands [Wed, 10 Jan 2018 10:45:04 +0000 (11:45 +0100)]
add template wrappers for ScaLAPACK functions and introduce support for float

6 years agosuppress PHG warning saying: PHG_EDGE_SIZE_THRESHOLD is low
vishalkenchan [Wed, 10 Jan 2018 10:42:45 +0000 (11:42 +0100)]
suppress PHG warning saying: PHG_EDGE_SIZE_THRESHOLD is low

6 years agoFixed Denis' comments. 5658/head
Luca Heltai [Wed, 10 Jan 2018 10:29:11 +0000 (11:29 +0100)]
Fixed Denis' comments.

6 years agoImprove documentation 5710/head
Daniel Arndt [Sun, 7 Jan 2018 12:10:18 +0000 (13:10 +0100)]
Improve documentation

6 years agoMerge pull request #5708 from davydden/bugfix/fix_zoltan
Daniel Arndt [Mon, 8 Jan 2018 23:24:39 +0000 (00:24 +0100)]
Merge pull request #5708 from davydden/bugfix/fix_zoltan

fix Zoltan debug output

6 years agofix Zoltan debug output 5708/head
Denis Davydov [Mon, 8 Jan 2018 21:25:17 +0000 (22:25 +0100)]
fix Zoltan debug output

6 years agoMerge pull request #5696 from bangerth/fix-hierarchical-2
Timo Heister [Mon, 8 Jan 2018 17:55:24 +0000 (12:55 -0500)]
Merge pull request #5696 from bangerth/fix-hierarchical-2

Fix hierarchical renumbering

6 years agoMerge pull request #5695 from masterleinad/dummy_cylindrical_manifold
Luca Heltai [Mon, 8 Jan 2018 12:00:48 +0000 (13:00 +0100)]
Merge pull request #5695 from masterleinad/dummy_cylindrical_manifold

Dummy implementation for CylindricalManifold for spacedim!=3

6 years agoFixed documentation and WB's comments.
Luca Heltai [Mon, 8 Jan 2018 11:27:28 +0000 (12:27 +0100)]
Fixed documentation and WB's comments.

6 years agoMerge pull request #5655 from Jie-Cheng/petsc_mmult
Wolfgang Bangerth [Mon, 8 Jan 2018 08:54:34 +0000 (02:54 -0600)]
Merge pull request #5655 from Jie-Cheng/petsc_mmult

Add PETScWrappers::MatrixBase::mmult

6 years agoUpdate documentation. 5696/head
Wolfgang Bangerth [Thu, 4 Jan 2018 15:41:26 +0000 (08:41 -0700)]
Update documentation.

6 years agoAdd a changelog entry.
Wolfgang Bangerth [Sun, 31 Dec 2017 23:36:07 +0000 (16:36 -0700)]
Add a changelog entry.

6 years agoAdd a test.
Wolfgang Bangerth [Sun, 31 Dec 2017 23:33:21 +0000 (16:33 -0700)]
Add a test.

6 years agoEnsure that DoFRenumbering::hierarchical() is independent of the previous DoF indices.
Wolfgang Bangerth [Sun, 31 Dec 2017 23:33:15 +0000 (16:33 -0700)]
Ensure that DoFRenumbering::hierarchical() is independent of the previous DoF indices.

6 years agoMerge pull request #5705 from marcfehling/step-26_positivity_preservation
Wolfgang Bangerth [Mon, 8 Jan 2018 08:09:01 +0000 (02:09 -0600)]
Merge pull request #5705 from marcfehling/step-26_positivity_preservation

Extended step-26 documentation with regard to positivity preservation.

6 years agoMinor edits to the positivity-preserving section of step-25 5705/head
Wolfgang Bangerth [Mon, 8 Jan 2018 08:08:06 +0000 (01:08 -0700)]
Minor edits to the positivity-preserving section of step-25

6 years agoMerge pull request #5706 from masterleinad/update_bits_cone_03
Wolfgang Bangerth [Mon, 8 Jan 2018 00:08:33 +0000 (18:08 -0600)]
Merge pull request #5706 from masterleinad/update_bits_cone_03

Update output of bits/cone_03

6 years agoDummy implementation for CylindricalManifold for spacedim!=3 5695/head
Daniel Arndt [Tue, 2 Jan 2018 23:38:34 +0000 (00:38 +0100)]
Dummy implementation for CylindricalManifold for spacedim!=3

6 years agoUpdate output of bits/cone_03 5706/head
Daniel Arndt [Sun, 7 Jan 2018 11:48:07 +0000 (12:48 +0100)]
Update output of bits/cone_03

6 years agoExtended step-26 documentation with regard to positivity preservation.
Marc Fehling [Sun, 7 Jan 2018 01:37:07 +0000 (02:37 +0100)]
Extended step-26 documentation with regard to positivity preservation.

6 years agoMerge pull request #5682 from masterleinad/replace_cylinder_boundary
Luca Heltai [Sat, 6 Jan 2018 21:19:56 +0000 (22:19 +0100)]
Merge pull request #5682 from masterleinad/replace_cylinder_boundary

Replace CylinderBoundary by CylindricalManifold in tests

6 years agoMerge pull request #5703 from masterleinad/replace_hypershell
Luca Heltai [Sat, 6 Jan 2018 21:19:24 +0000 (22:19 +0100)]
Merge pull request #5703 from masterleinad/replace_hypershell

 Replace HyperShellBoundary by SphericalManifold in tests

6 years agoMerge pull request #5698 from masterleinad/rebase_opencascade_boundaries
Luca Heltai [Sat, 6 Jan 2018 21:19:06 +0000 (22:19 +0100)]
Merge pull request #5698 from masterleinad/rebase_opencascade_boundaries

Rebase Opencascade Boundary classes

6 years agoMerge pull request #5697 from masterleinad/replace_cone_boundary
Luca Heltai [Sat, 6 Jan 2018 21:18:45 +0000 (22:18 +0100)]
Merge pull request #5697 from masterleinad/replace_cone_boundary

 Replace ConeBoundary by CylindricalManifold

6 years agoMerge pull request #5700 from Rombur/cuda_assert
Daniel Arndt [Sat, 6 Jan 2018 00:00:29 +0000 (01:00 +0100)]
Merge pull request #5700 from Rombur/cuda_assert

Make AssertCuda use Assert instead of AssertThrow

6 years agoMerge pull request #5702 from vishalkenchan/bug_fix/rol_vector_adaptor
Denis Davydov [Fri, 5 Jan 2018 20:59:47 +0000 (21:59 +0100)]
Merge pull request #5702 from vishalkenchan/bug_fix/rol_vector_adaptor

ROL: bug fix applyBinary function in Rol::VectorAdaptor

6 years agoMerge pull request #5701 from masterleinad/fix_tests_5691
Wolfgang Bangerth [Fri, 5 Jan 2018 18:33:57 +0000 (12:33 -0600)]
Merge pull request #5701 from masterleinad/fix_tests_5691

Fix failing tests after #5691

6 years agoMerge pull request #5699 from Rombur/pedantic
Matthias Maier [Fri, 5 Jan 2018 17:54:57 +0000 (11:54 -0600)]
Merge pull request #5699 from Rombur/pedantic

Do not use pedantic when cuda support is enabled

6 years agoUse SphericalManifold in mpi/p4est_2d_constraintmatrix_03 5703/head
Daniel Arndt [Fri, 5 Jan 2018 14:08:11 +0000 (15:08 +0100)]
Use SphericalManifold in mpi/p4est_2d_constraintmatrix_03

6 years agoSimplify mpi/p4est_2d_constraintmatrix_03
Daniel Arndt [Fri, 5 Jan 2018 16:02:40 +0000 (17:02 +0100)]
Simplify mpi/p4est_2d_constraintmatrix_03

6 years agoDo not use pedantic when cuda support is enabled 5699/head
Bruno Turcksin [Fri, 5 Jan 2018 16:45:04 +0000 (11:45 -0500)]
Do not use pedantic when cuda support is enabled

nvcc generates code that produces a lot of warnings when pedantic is used.
Since the code is generated by nvcc there is nothing we can do about it except
not using pedantic.

6 years agoReplace HyperShellBoundary by SphericalManifold in tests
Daniel Arndt [Fri, 5 Jan 2018 16:02:51 +0000 (17:02 +0100)]
Replace HyperShellBoundary by SphericalManifold in tests

6 years agoMerge pull request #5684 from masterleinad/replace_boundary
Daniel Arndt [Fri, 5 Jan 2018 13:58:29 +0000 (14:58 +0100)]
Merge pull request #5684 from masterleinad/replace_boundary

Replace StraightBoundary by FlatManifold in tests

6 years agobug fix applyBinary function in Rol::VectorAdaptor 5702/head
vishalkenchan [Fri, 5 Jan 2018 13:40:06 +0000 (14:40 +0100)]
bug fix applyBinary function in Rol::VectorAdaptor

6 years agoChangelog entry 5698/head
Daniel Arndt [Thu, 4 Jan 2018 23:38:48 +0000 (00:38 +0100)]
Changelog entry

6 years agoFix failing tests after #5691 5701/head
Daniel Arndt [Fri, 5 Jan 2018 11:43:55 +0000 (12:43 +0100)]
Fix failing tests after #5691

6 years agoSimplify computation of normal vector in 2D 5684/head
Daniel Arndt [Thu, 4 Jan 2018 17:07:09 +0000 (18:07 +0100)]
Simplify computation of normal vector in 2D

6 years agoReplace StraightBoundary by FlatManifold in tests
Daniel Arndt [Tue, 2 Jan 2018 18:56:56 +0000 (19:56 +0100)]
Replace StraightBoundary by FlatManifold in tests

6 years agoMove implementation of normal_vector and get_normal_at_vertices from StraightBoundary...
Daniel Arndt [Tue, 2 Jan 2018 18:56:32 +0000 (19:56 +0100)]
Move implementation of normal_vector and get_normal_at_vertices from StraightBoundary to FlatManifold

6 years agoMake AssertCuda use Assert instead of AssertThrow 5700/head
Bruno Turcksin [Fri, 5 Jan 2018 02:23:44 +0000 (21:23 -0500)]
Make AssertCuda use Assert instead of AssertThrow

We used AssertThrow instead of Assert in AssertCuda because of a bug that has
now been fixed.

6 years agoAdd PETScWrappers::MatrixBase::mmult 5655/head
Jie Cheng [Wed, 20 Dec 2017 20:47:56 +0000 (15:47 -0500)]
Add PETScWrappers::MatrixBase::mmult

6 years agoRebase Opencascade Boundary classes onto FlatManifold
Daniel Arndt [Thu, 4 Jan 2018 23:12:31 +0000 (00:12 +0100)]
Rebase Opencascade Boundary classes onto FlatManifold

6 years agoChangelog entry 5697/head
Daniel Arndt [Thu, 4 Jan 2018 16:20:52 +0000 (17:20 +0100)]
Changelog entry

6 years agoUpdate documentation
Daniel Arndt [Thu, 4 Jan 2018 16:17:40 +0000 (17:17 +0100)]
Update documentation

6 years agoReplace ConeBoundary by CylindricalManifold in tests
Daniel Arndt [Thu, 4 Jan 2018 16:09:45 +0000 (17:09 +0100)]
Replace ConeBoundary by CylindricalManifold in tests

6 years agoImplement CylindricalManifold::push_forward_gradient
Daniel Arndt [Thu, 4 Jan 2018 16:08:21 +0000 (17:08 +0100)]
Implement CylindricalManifold::push_forward_gradient

6 years agoSimplify CylindricalManifold::push_forward
Daniel Arndt [Thu, 4 Jan 2018 16:01:41 +0000 (17:01 +0100)]
Simplify CylindricalManifold::push_forward

6 years agoAdd comment.
Wolfgang Bangerth [Sun, 31 Dec 2017 22:24:59 +0000 (15:24 -0700)]
Add comment.

6 years agoMerge pull request #5694 from bangerth/glossary
Daniel Arndt [Thu, 4 Jan 2018 14:38:52 +0000 (15:38 +0100)]
Merge pull request #5694 from bangerth/glossary

Write something about the Z order in the glossary.

6 years agoWrite something about the Z order in the glossary. 5694/head
Wolfgang Bangerth [Tue, 2 Jan 2018 22:54:47 +0000 (15:54 -0700)]
Write something about the Z order in the glossary.

6 years agoMerge pull request #5691 from gassmoeller/write_float_vtu
Wolfgang Bangerth [Thu, 4 Jan 2018 13:51:47 +0000 (07:51 -0600)]
Merge pull request #5691 from gassmoeller/write_float_vtu

Write data and vertices as floats

6 years agoAdd changelog 5691/head
Rene Gassmoeller [Thu, 4 Jan 2018 13:38:14 +0000 (14:38 +0100)]
Add changelog

6 years agoUpdate test results
Rene Gassmoeller [Wed, 3 Jan 2018 18:15:03 +0000 (19:15 +0100)]
Update test results

6 years agoWrite data and vertices as floats
Rene Gassmoeller [Tue, 26 Dec 2017 21:33:47 +0000 (15:33 -0600)]
Write data and vertices as floats

6 years agoMerge pull request #5689 from bangerth/fix
Timo Heister [Wed, 3 Jan 2018 10:00:26 +0000 (05:00 -0500)]
Merge pull request #5689 from bangerth/fix

Use the correct iterator type in DoFRenumbering::hierarchical().

6 years agoMerge pull request #5692 from masterleinad/avoid_compiler_warning
David Wells [Wed, 3 Jan 2018 05:33:11 +0000 (00:33 -0500)]
Merge pull request #5692 from masterleinad/avoid_compiler_warning

Avoid compiler warning regarding writing past the end of an array

6 years agoMerge pull request #5693 from masterleinad/fix_typo_grid_out
David Wells [Wed, 3 Jan 2018 05:31:15 +0000 (00:31 -0500)]
Merge pull request #5693 from masterleinad/fix_typo_grid_out

Fix typo in GridOutFlags::Vtu

6 years agoFix typo 5693/head
Daniel Arndt [Tue, 2 Jan 2018 14:10:47 +0000 (15:10 +0100)]
Fix typo

6 years agoAvoid compiler warning regarding writing 5692/head
Daniel Arndt [Tue, 2 Jan 2018 18:49:58 +0000 (19:49 +0100)]
Avoid compiler warning regarding writing
beyond the end of an array

6 years agoUse the correct iterator type in DoFRenumbering::hierarchical(). 5689/head
Wolfgang Bangerth [Sun, 31 Dec 2017 22:31:18 +0000 (15:31 -0700)]
Use the correct iterator type in DoFRenumbering::hierarchical().

6 years agoMerge pull request #5685 from bangerth/fix-hierarchical
Timo Heister [Mon, 1 Jan 2018 09:28:43 +0000 (04:28 -0500)]
Merge pull request #5685 from bangerth/fix-hierarchical

Clean up some odds and ends.

6 years agoMerge pull request #5687 from bangerth/doc-update
Timo Heister [Mon, 1 Jan 2018 09:26:56 +0000 (04:26 -0500)]
Merge pull request #5687 from bangerth/doc-update

Update a couple of comments for p::s::Triangulation.

6 years agoMerge pull request #5688 from bangerth/micro-fix
Timo Heister [Mon, 1 Jan 2018 09:26:10 +0000 (04:26 -0500)]
Merge pull request #5688 from bangerth/micro-fix

Make an input argument to a function 'const'.

6 years agoMake an input argument to a function 'const'. 5688/head
Wolfgang Bangerth [Sun, 31 Dec 2017 22:27:47 +0000 (15:27 -0700)]
Make an input argument to a function 'const'.


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