]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoFixed parameters_23.prm
Luca Heltai [Thu, 14 May 2020 23:12:47 +0000 (01:12 +0200)]
Fixed parameters_23.prm

4 years agoFixed indent.
Luca Heltai [Thu, 14 May 2020 22:28:21 +0000 (00:28 +0200)]
Fixed indent.

4 years agoSome minor changes. Add support for output directory.
Luca Heltai [Tue, 12 May 2020 22:31:42 +0000 (00:31 +0200)]
Some minor changes. Add support for output directory.

4 years ago- Changed the default values for the parameters for the 2D case. The default case...
blaisb [Tue, 12 May 2020 02:55:50 +0000 (22:55 -0400)]
- Changed the default values for the parameters for the 2D case. The default case should run easily and produce better results
- Finalized resulted for the 2D case
- Minor modifications to introduction

4 years ago- Fixed indentation
blaisb [Mon, 11 May 2020 15:58:59 +0000 (11:58 -0400)]
- Fixed indentation
- Corrected small typos /sentences in introduction
- Removed the automatic deletion of .vtk files for step-70

4 years agoFirst draft of results
Luca Heltai [Mon, 11 May 2020 10:55:42 +0000 (12:55 +0200)]
First draft of results

4 years agoFixed indent.
Luca Heltai [Mon, 11 May 2020 00:30:42 +0000 (02:30 +0200)]
Fixed indent.

4 years agoWorking 3d.
Luca Heltai [Sun, 10 May 2020 23:54:35 +0000 (01:54 +0200)]
Working 3d.

4 years agoSwitched to FGMRES.
Luca Heltai [Sun, 10 May 2020 12:04:08 +0000 (14:04 +0200)]
Switched to FGMRES.

4 years agoFixed small issues.
Luca Heltai [Sun, 10 May 2020 10:48:46 +0000 (12:48 +0200)]
Fixed small issues.

4 years agoFix more typos and add a paragraph about particles
Rene Gassmoeller [Sun, 10 May 2020 00:02:17 +0000 (17:02 -0700)]
Fix more typos and add a paragraph about particles

4 years agoFix some typos
Rene Gassmoeller [Sat, 9 May 2020 23:14:21 +0000 (16:14 -0700)]
Fix some typos

4 years agoAddresses all of the corrections and comments of @peterrum
blaisb [Thu, 7 May 2020 02:16:00 +0000 (22:16 -0400)]
Addresses all of the corrections and comments of @peterrum
Introduction and documentation can still be improved.

4 years agoFixed codimension one build.
Luca Heltai [Sat, 2 May 2020 21:31:06 +0000 (23:31 +0200)]
Fixed codimension one build.

4 years agoShort fix to documentation
blaisb [Sat, 2 May 2020 06:07:31 +0000 (02:07 -0400)]
Short fix to documentation

4 years ago- Corrected typos and mistakes
blaisb [Sat, 2 May 2020 05:58:26 +0000 (01:58 -0400)]
- Corrected typos and mistakes
- Finished first pass at documenting step-70
- Changed the default parameter of nitsche penalization to ensure convergence of iterative solver in parallel
- Changed the function driving the motion of the impeller to ensure it comes back at it's original place in then end

4 years agoSome more docs.
Luca Heltai [Fri, 1 May 2020 23:03:03 +0000 (01:03 +0200)]
Some more docs.

4 years agoAllow filenames and cad files.
Luca Heltai [Fri, 1 May 2020 14:58:48 +0000 (16:58 +0200)]
Allow filenames and cad files.

4 years agoTrailing space.
Luca Heltai [Fri, 1 May 2020 13:12:33 +0000 (15:12 +0200)]
Trailing space.

4 years agoMore docs.
Luca Heltai [Fri, 1 May 2020 10:47:20 +0000 (12:47 +0200)]
More docs.

4 years agoFixed typos and small formulas error in the introduction
blaisb [Fri, 1 May 2020 03:05:55 +0000 (23:05 -0400)]
Fixed typos and small formulas error in the introduction

4 years agoRevised and corrected intro.dox
Luca Heltai [Thu, 30 Apr 2020 21:48:33 +0000 (23:48 +0200)]
Revised and corrected intro.dox

4 years agoAdded description of step-70 in top level directory.
Luca Heltai [Thu, 30 Apr 2020 19:33:11 +0000 (21:33 +0200)]
Added description of step-70 in top level directory.

4 years agoAdd implementation of Nitsche for co-dim one
Luca Heltai [Thu, 30 Apr 2020 18:03:55 +0000 (20:03 +0200)]
Add implementation of Nitsche for co-dim one

4 years ago- Fixed a lot of mistakes in equations that prevented rendering
blaisb [Thu, 30 Apr 2020 17:11:06 +0000 (13:11 -0400)]
- Fixed a lot of mistakes in equations that prevented rendering
- Fixed a few spelling mistakes
- Fixed formulation of the weak form for the Nitsche method

4 years agoIndentation fix
blaisb [Thu, 30 Apr 2020 13:05:30 +0000 (09:05 -0400)]
Indentation fix

4 years agoTry to fix doxygen.
Luca Heltai [Thu, 30 Apr 2020 12:09:08 +0000 (14:09 +0200)]
Try to fix doxygen.

4 years agoFinished a first complete draft of the introduction
blaisb [Thu, 30 Apr 2020 04:40:15 +0000 (00:40 -0400)]
Finished a first complete draft of the introduction

4 years agoSome documentation.
Luca Heltai [Tue, 28 Apr 2020 21:36:19 +0000 (23:36 +0200)]
Some documentation.

4 years agoProgress on documentation
blaisb [Mon, 20 Apr 2020 02:19:35 +0000 (22:19 -0400)]
Progress on documentation

4 years agoBegun work on the introduction of the documentation of step-70
blaisb [Sat, 18 Apr 2020 05:39:27 +0000 (01:39 -0400)]
Begun work on the introduction of the documentation of step-70

4 years agoLocal refinement, and output to single vtu + global pvd.
Luca Heltai [Fri, 17 Apr 2020 00:41:45 +0000 (02:41 +0200)]
Local refinement, and output to single vtu + global pvd.

4 years agoCopy doc from step-60.
Luca Heltai [Tue, 14 Apr 2020 23:09:21 +0000 (01:09 +0200)]
Copy doc from step-60.

4 years agoAdded example parameter file.
Luca Heltai [Tue, 14 Apr 2020 23:00:20 +0000 (01:00 +0200)]
Added example parameter file.

4 years agoStep-70
Luca Heltai [Thu, 21 Nov 2019 19:28:22 +0000 (20:28 +0100)]
Step-70

Work in progress for step-70.

Co-authored-by: Bruno Blais <blais.bruno@gmail.com>
4 years agoMerge pull request #10182 from nfehn/feevaluation
Martin Kronbichler [Thu, 14 May 2020 19:46:23 +0000 (21:46 +0200)]
Merge pull request #10182 from nfehn/feevaluation

clarify documentation of FEEvaluation::set_dof_values()

4 years agoMerge pull request #10208 from agrayver/fix_python_manifold
Martin Kronbichler [Thu, 14 May 2020 19:45:31 +0000 (21:45 +0200)]
Merge pull request #10208 from agrayver/fix_python_manifold

Fix python FunctionManifold

4 years agoMerge pull request #10013 from marcfehling/pd-error-prediction-extension
Wolfgang Bangerth [Thu, 14 May 2020 15:44:29 +0000 (17:44 +0200)]
Merge pull request #10013 from marcfehling/pd-error-prediction-extension

Introduced p::d::ErrorPredictor.

4 years agoclarify documentation of FEEvaluation::set_dof_values() 10182/head
Niklas Fehn [Wed, 13 May 2020 11:56:39 +0000 (13:56 +0200)]
clarify documentation of FEEvaluation::set_dof_values()

4 years agoIntroduced p::d::ErrorPredictor. 10013/head
Marc Fehling [Fri, 22 Nov 2019 17:06:14 +0000 (18:06 +0100)]
Introduced p::d::ErrorPredictor.

Predicts error after adaptation based on future_fe_indices and CellStatus.

4 years agoMerge pull request #10194 from drwells/remove-cout-from-test
Timo Heister [Thu, 14 May 2020 11:56:53 +0000 (07:56 -0400)]
Merge pull request #10194 from drwells/remove-cout-from-test

Avoid using std::cout in a test.

4 years agoMerge pull request #10201 from tamiko/fix_parpack_search
Timo Heister [Thu, 14 May 2020 11:55:52 +0000 (07:55 -0400)]
Merge pull request #10201 from tamiko/fix_parpack_search

CMake: relax arpack and parpack library directory requirements

4 years agoMerge pull request #10207 from peterrum/extract_rtree_level_small_fix
Timo Heister [Thu, 14 May 2020 11:55:29 +0000 (07:55 -0400)]
Merge pull request #10207 from peterrum/extract_rtree_level_small_fix

Fix extract_rtree_level for small problem sizes

4 years agoFix python FunctionManifold 10208/head
Alexander Grayver [Thu, 14 May 2020 09:25:39 +0000 (11:25 +0200)]
Fix python FunctionManifold

4 years agoFix extract_rtree_level for small problem sizes 10207/head
Peter Munch [Thu, 14 May 2020 08:32:50 +0000 (10:32 +0200)]
Fix extract_rtree_level for small problem sizes

4 years agoMerge pull request #10199 from masterleinad/fix_mpi_condense_petsc_complex
Timo Heister [Thu, 14 May 2020 00:29:22 +0000 (20:29 -0400)]
Merge pull request #10199 from masterleinad/fix_mpi_condense_petsc_complex

Choose output files for mpi/condense_01 correctly

4 years agoMerge pull request #10202 from bangerth/changelog
Matthias Maier [Wed, 13 May 2020 23:21:29 +0000 (18:21 -0500)]
Merge pull request #10202 from bangerth/changelog

Update an entry in the changelog.

4 years agoUpdate an entry in the changelog. 10202/head
Wolfgang Bangerth [Wed, 13 May 2020 23:05:53 +0000 (17:05 -0600)]
Update an entry in the changelog.

4 years agoCMake: relax arpack and parpack library directory requirements 10201/head
Matthias Maier [Wed, 13 May 2020 22:54:10 +0000 (17:54 -0500)]
CMake: relax arpack and parpack library directory requirements

Some Linux distributions install the parallel libparpack.so* component
in an MPI vendor specific directory different from the location of the
serial libarpack.so* library. We can thus not assume that both are
located in the same directory.

Closes: #10197
4 years agoMerge pull request #10195 from tamiko/fix_doxygen_include_strip
Matthias Maier [Wed, 13 May 2020 22:49:29 +0000 (17:49 -0500)]
Merge pull request #10195 from tamiko/fix_doxygen_include_strip

Doxygen: Fix include strip

4 years agoChoose output files for mpi/condense_01 correctly 10199/head
Daniel Arndt [Wed, 13 May 2020 22:09:46 +0000 (18:09 -0400)]
Choose output files for mpi/condense_01 correctly

4 years agoDoxygen: Fix include strip 10195/head
Matthias Maier [Wed, 13 May 2020 19:19:18 +0000 (14:19 -0500)]
Doxygen: Fix include strip

This fixes a bug introduced in #10187

4 years agoMerge pull request #10189 from tamiko/documentation-fix-code-gallery-installation...
Wolfgang Bangerth [Wed, 13 May 2020 17:57:05 +0000 (19:57 +0200)]
Merge pull request #10189 from tamiko/documentation-fix-code-gallery-installation-path

Documentation: Treat code gallery projects as examples

4 years agoAvoid using std::cout in a test. 10194/head
David Wells [Wed, 13 May 2020 17:37:24 +0000 (13:37 -0400)]
Avoid using std::cout in a test.

This is problematic on misconfigured MPI implementations that print
warnings for one reason or another every time they are run (e.g., the
default MPI implementation on Ubuntu 16.04).

It is easy enough in this case to do the normal thing and print
everything to deallog.

4 years agoMerge pull request #10191 from tamiko/fix_code_gallery
Timo Heister [Wed, 13 May 2020 17:04:40 +0000 (13:04 -0400)]
Merge pull request #10191 from tamiko/fix_code_gallery

Documentation: fix make_gallery.pl

4 years agoMerge pull request #10190 from masterleinad/run_travis
Timo Heister [Wed, 13 May 2020 17:02:23 +0000 (13:02 -0400)]
Merge pull request #10190 from masterleinad/run_travis

Run Travis on all branches

4 years agoDocumentation: fix make_gallery.pl 10191/head
Matthias Maier [Wed, 13 May 2020 16:46:31 +0000 (11:46 -0500)]
Documentation: fix make_gallery.pl

Otherwise newer doxygen does not parse the generated *.h files...
See #8972

4 years agoRun Travis on all branches 10190/head
Daniel Arndt [Wed, 13 May 2020 16:41:20 +0000 (12:41 -0400)]
Run Travis on all branches

4 years agoDocumentation: Treat code gallery projects as examples 10189/head
Matthias Maier [Wed, 13 May 2020 16:02:38 +0000 (11:02 -0500)]
Documentation: Treat code gallery projects as examples

Installing the code gallery projects as part of the html documentation
is not ideal. Let us install the code gallery projects as a sub
directory under the EXAMPLES_RELDIR instead:

  examples/code-gallery/*
  examples/step-*

4 years agoMerge pull request #10183 from bangerth/47
Daniel Arndt [Wed, 13 May 2020 13:59:21 +0000 (09:59 -0400)]
Merge pull request #10183 from bangerth/47

4 years agoFix missing closing braces. 10183/head
Wolfgang Bangerth [Wed, 13 May 2020 13:37:08 +0000 (07:37 -0600)]
Fix missing closing braces.

4 years agoMerge pull request #10181 from kronbichler/always_inline_method
Daniel Arndt [Wed, 13 May 2020 13:02:02 +0000 (09:02 -0400)]
Merge pull request #10181 from kronbichler/always_inline_method

4 years agoAlways inline FEEvaluationBase::inverse_jacobian 10181/head
Martin Kronbichler [Wed, 13 May 2020 10:55:29 +0000 (12:55 +0200)]
Always inline FEEvaluationBase::inverse_jacobian

4 years agoMerge pull request #10179 from tamiko/make_offlinedoc
Martin Kronbichler [Wed, 13 May 2020 10:01:09 +0000 (12:01 +0200)]
Merge pull request #10179 from tamiko/make_offlinedoc

contrib/utilities/makeofflinedoc.sh: Also install jpg

4 years agoMerge pull request #10178 from tamiko/fix_doxygen_stip_path
Martin Kronbichler [Wed, 13 May 2020 10:00:25 +0000 (12:00 +0200)]
Merge pull request #10178 from tamiko/fix_doxygen_stip_path

doxygen: Strip full @CMAKE_SOURCE_DIR@ and @CMAKE_BINARY_DIR@

4 years agoMerge pull request #10176 from Rombur/fix_cuda_release
Martin Kronbichler [Wed, 13 May 2020 09:58:25 +0000 (11:58 +0200)]
Merge pull request #10176 from Rombur/fix_cuda_release

CUDA: multiple fixes

4 years agocontrib/utilities/makeofflinedoc.sh: Also install jpg 10179/head
Matthias Maier [Wed, 13 May 2020 06:43:02 +0000 (01:43 -0500)]
contrib/utilities/makeofflinedoc.sh: Also install jpg

4 years agoMerge pull request #10161 from lethe-cfd/interpolate_to_particles_unused_variables
Martin Kronbichler [Wed, 13 May 2020 06:01:48 +0000 (08:01 +0200)]
Merge pull request #10161 from lethe-cfd/interpolate_to_particles_unused_variables

Removed two variables which were not used in particles/utilities.h

4 years agodoxygen: Strip full @CMAKE_SOURCE_DIR@ and @CMAKE_BINARY_DIR@ 10178/head
Matthias Maier [Wed, 13 May 2020 05:12:48 +0000 (00:12 -0500)]
doxygen: Strip full @CMAKE_SOURCE_DIR@ and @CMAKE_BINARY_DIR@

The current configuration fails to strip the repository path from source
directories, e.g., on the homepage we have for example:

"""
The documentation for this struct was generated from the following files:

    deal.II/lac/petsc_precondition.h
    /home/dealii/dealii/source/lac/petsc_precondition.cc
"""

With this change this now reads:

"""
The documentation for this struct was generated from the following files:

    include/deal.II/lac/petsc_precondition.h
    source/lac/petsc_precondition.cc
"""

4 years agoMerge pull request #10173 from tjhei/jenkins_test_release_branches_master
Matthias Maier [Wed, 13 May 2020 03:17:02 +0000 (22:17 -0500)]
Merge pull request #10173 from tjhei/jenkins_test_release_branches_master

Jenkins: also test release branches

4 years agoMerge pull request #10168 from tamiko/fix_offending_tests
Daniel Arndt [Wed, 13 May 2020 02:12:19 +0000 (22:12 -0400)]
Merge pull request #10168 from tamiko/fix_offending_tests

4 years agoSilence deprecation warnings 10176/head
Bruno Turcksin [Wed, 13 May 2020 02:11:32 +0000 (02:11 +0000)]
Silence deprecation warnings

4 years agoFix comment
Bruno Turcksin [Wed, 13 May 2020 02:03:05 +0000 (02:03 +0000)]
Fix comment

4 years agoRemove unusable variable
Bruno Turcksin [Wed, 13 May 2020 02:02:26 +0000 (02:02 +0000)]
Remove unusable variable

4 years agoUse sensible default parameter
Bruno Turcksin [Wed, 13 May 2020 02:01:49 +0000 (02:01 +0000)]
Use sensible default parameter

4 years agoFix test after some sadd and equ functions have been removed
Bruno Turcksin [Wed, 13 May 2020 02:00:50 +0000 (02:00 +0000)]
Fix test after some sadd and equ functions have been removed

4 years agoJenknis: also test release branches 10173/head
Timo Heister [Tue, 12 May 2020 19:14:42 +0000 (15:14 -0400)]
Jenknis: also test release branches

4 years agoMerge pull request #10171 from tamiko/output_alternatives
Daniel Arndt [Wed, 13 May 2020 01:12:05 +0000 (21:12 -0400)]
Merge pull request #10171 from tamiko/output_alternatives

4 years agoupdate fe_series tests again to latest changes 10171/head
Matthias Maier [Wed, 13 May 2020 00:58:08 +0000 (19:58 -0500)]
update fe_series tests again to latest changes

4 years agodo not print mesh in opencascade/stl_* tests 10168/head
Matthias Maier [Wed, 13 May 2020 00:27:35 +0000 (19:27 -0500)]
do not print mesh in opencascade/stl_* tests

These tests create a mesh (with our opencascade) interface.
Unfortunately, the result pretty much depends on the mesher being used
(which changes between opencascade and oce versions), the standard
library version (libstdc++ versus libc++) and the CPU architecture.

I initially thought that the test result would not depend on the machine
this test is running on and created the output alternatives
(*.output.opencascade7.4.0) on my laptop. Evidently this did not fix
this test on our main tester. Let's simply remove the output and just
check that the code path runs without throwing an error.

4 years agoMerge pull request #10166 from tamiko/documentation_fix
Timo Heister [Tue, 12 May 2020 22:14:50 +0000 (18:14 -0400)]
Merge pull request #10166 from tamiko/documentation_fix

examples/step-69: fix texttt formulas

4 years agoexamples/step-69: fix texttt formulas 10166/head
Matthias Maier [Tue, 12 May 2020 22:01:37 +0000 (17:01 -0500)]
examples/step-69: fix texttt formulas

4 years agoRemoved two variables which were not used in particles/utilities.h 10161/head
blaisb [Tue, 12 May 2020 20:14:06 +0000 (16:14 -0400)]
Removed two variables which were not used in particles/utilities.h

4 years agoMerge pull request #10158 from tamiko/reuquire_current_version
Matthias Maier [Tue, 12 May 2020 18:00:47 +0000 (13:00 -0500)]
Merge pull request #10158 from tamiko/reuquire_current_version

Release step 6a: Require the current version of deal.II

4 years agoMerge pull request #10157 from tamiko/update_version
David Wells [Tue, 12 May 2020 17:56:46 +0000 (13:56 -0400)]
Merge pull request #10157 from tamiko/update_version

Release step 5: update VERSION

4 years agoMerge pull request #10156 from tamiko/update-tag-file
David Wells [Tue, 12 May 2020 17:56:36 +0000 (13:56 -0400)]
Merge pull request #10156 from tamiko/update-tag-file

Release step 1a: Update tag list

4 years agoMerge pull request #10154 from tamiko/update-changes-file
Matthias Maier [Tue, 12 May 2020 17:55:16 +0000 (12:55 -0500)]
Merge pull request #10154 from tamiko/update-changes-file

Release step 1: Update changelog file

4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h 10154/head
Matthias Maier [Tue, 12 May 2020 17:28:31 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:25 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:16 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:08 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:28:02 +0000 (12:28 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:55 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:44 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:20 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoUpdate doc/news/9.1.1-vs-9.2.0.h
Matthias Maier [Tue, 12 May 2020 17:27:06 +0000 (12:27 -0500)]
Update doc/news/9.1.1-vs-9.2.0.h

Co-authored-by: David Wells <drwells@email.unc.edu>
4 years agoadd dummy entries to make travis happy
Matthias Maier [Tue, 12 May 2020 17:17:09 +0000 (12:17 -0500)]
add dummy entries to make travis happy

4 years agofix year range
Matthias Maier [Tue, 12 May 2020 17:12:07 +0000 (12:12 -0500)]
fix year range

4 years agoMerge pull request #10155 from masterleinad/instantiate_opencascade
Martin Kronbichler [Tue, 12 May 2020 17:10:52 +0000 (19:10 +0200)]
Merge pull request #10155 from masterleinad/instantiate_opencascade

Instantiate OpenCASCADE

4 years agoRequire the current version of deal.II. 10158/head
Matthias Maier [Tue, 12 May 2020 17:08:27 +0000 (12:08 -0500)]
Require the current version of deal.II.


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