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https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Sun, 6 Jan 2013 00:24:29 +0000 (00:24 +0000)]
Remove now redundant include file.
git-svn-id: https://svn.dealii.org/trunk@27940
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bangerth [Sun, 6 Jan 2013 00:21:28 +0000 (00:21 +0000)]
Adjust after merge.
git-svn-id: https://svn.dealii.org/trunk@27939
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bangerth [Sat, 5 Jan 2013 23:10:50 +0000 (23:10 +0000)]
Update.
git-svn-id: https://svn.dealii.org/trunk@27936
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bangerth [Sat, 5 Jan 2013 13:35:26 +0000 (13:35 +0000)]
Remove branch marker again.
git-svn-id: https://svn.dealii.org/trunk@27933
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bangerth [Sat, 5 Jan 2013 12:12:49 +0000 (12:12 +0000)]
Avoid deprecated types and variables.
git-svn-id: https://svn.dealii.org/trunk@27932
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bangerth [Sat, 5 Jan 2013 12:12:16 +0000 (12:12 +0000)]
Extend Utilities::int_to_string to up to 10 digits.
git-svn-id: https://svn.dealii.org/trunk@27931
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heister [Fri, 4 Jan 2013 21:54:31 +0000 (21:54 +0000)]
update Makefile for step-50 to disable compilation if Trilinos or p4est is missing
git-svn-id: https://svn.dealii.org/trunk@27926
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heister [Fri, 4 Jan 2013 16:34:08 +0000 (16:34 +0000)]
leave todo
git-svn-id: https://svn.dealii.org/trunk@27923
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heister [Fri, 4 Jan 2013 16:14:09 +0000 (16:14 +0000)]
remove references to mg_dof_accessor.h
git-svn-id: https://svn.dealii.org/trunk@27922
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heister [Fri, 4 Jan 2013 16:12:34 +0000 (16:12 +0000)]
mark mg_dof_accessor.h deprecated and remove it everywhere
git-svn-id: https://svn.dealii.org/trunk@27921
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kronbichler [Fri, 4 Jan 2013 14:20:45 +0000 (14:20 +0000)]
Force reconfigure also when template arguments or dealii templates change.
git-svn-id: https://svn.dealii.org/trunk@27920
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kronbichler [Fri, 4 Jan 2013 10:10:48 +0000 (10:10 +0000)]
Delete MGDoFHandler from matrix free class. These features are now present in DoFHandler.
git-svn-id: https://svn.dealii.org/trunk@27919
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kronbichler [Fri, 4 Jan 2013 08:16:04 +0000 (08:16 +0000)]
Silence warning.
git-svn-id: https://svn.dealii.org/trunk@27918
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kronbichler [Fri, 4 Jan 2013 08:11:46 +0000 (08:11 +0000)]
Ensure compilation without p4est.
git-svn-id: https://svn.dealii.org/trunk@27917
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kronbichler [Fri, 4 Jan 2013 08:05:24 +0000 (08:05 +0000)]
Fix compilation
git-svn-id: https://svn.dealii.org/trunk@27916
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heister [Thu, 3 Jan 2013 21:43:00 +0000 (21:43 +0000)]
update changes.h: MGDoFHandler is deprecated
git-svn-id: https://svn.dealii.org/trunk@27913
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heister [Thu, 3 Jan 2013 21:37:23 +0000 (21:37 +0000)]
reintegrate branch merge_mg_into_dof_handler
git-svn-id: https://svn.dealii.org/trunk@27912
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bangerth [Wed, 2 Jan 2013 18:52:06 +0000 (18:52 +0000)]
Update link to the new changelogs (websvn).
git-svn-id: https://svn.dealii.org/trunk@27906
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heister [Wed, 2 Jan 2013 18:50:55 +0000 (18:50 +0000)]
add trilinos 11.0.3 as supported
git-svn-id: https://svn.dealii.org/trunk@27905
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bangerth [Wed, 2 Jan 2013 18:50:40 +0000 (18:50 +0000)]
Update link to the new changelogs (websvn).
git-svn-id: https://svn.dealii.org/trunk@27904
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kronbichler [Wed, 2 Jan 2013 17:03:38 +0000 (17:03 +0000)]
Remove unnecessary line.
git-svn-id: https://svn.dealii.org/trunk@27899
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bangerth [Wed, 2 Jan 2013 17:03:23 +0000 (17:03 +0000)]
Patch by Fahad Alrashed: Add a possibly different PETSc Viewer object to PETScWrappers::MatrixBase::write_ascii().
git-svn-id: https://svn.dealii.org/trunk@27898
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bangerth [Wed, 2 Jan 2013 16:59:56 +0000 (16:59 +0000)]
Patch by Fahad Alrashed: Overload PETScWrappers::MPI::Vector::print to make sure the right thing happens in parallel.
git-svn-id: https://svn.dealii.org/trunk@27897
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bangerth [Wed, 2 Jan 2013 16:54:31 +0000 (16:54 +0000)]
Patch by Fahad Alrashed: Add PETScWrappers::VectorBase::write_ascii.
git-svn-id: https://svn.dealii.org/trunk@27896
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bangerth [Mon, 31 Dec 2012 00:55:14 +0000 (00:55 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@27877
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kronbichler [Fri, 28 Dec 2012 10:41:54 +0000 (10:41 +0000)]
Fix a few out-of-bound array accesses. Refill some comments.
git-svn-id: https://svn.dealii.org/trunk@27865
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kronbichler [Fri, 28 Dec 2012 09:09:27 +0000 (09:09 +0000)]
Fix iterator types.
git-svn-id: https://svn.dealii.org/trunk@27864
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kronbichler [Fri, 28 Dec 2012 08:16:20 +0000 (08:16 +0000)]
The std::map that stored pointers to Jacobians could lead to a situation where the pointers became invalid. Store the actual data in the map now.
git-svn-id: https://svn.dealii.org/trunk@27862
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kronbichler [Thu, 27 Dec 2012 16:41:06 +0000 (16:41 +0000)]
Two more MPI_Allreduce commands that should not be called when using a single processor.
git-svn-id: https://svn.dealii.org/trunk@27861
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kronbichler [Thu, 27 Dec 2012 14:26:22 +0000 (14:26 +0000)]
Adjust output.
git-svn-id: https://svn.dealii.org/trunk@27860
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kronbichler [Thu, 27 Dec 2012 14:15:04 +0000 (14:15 +0000)]
Avoid calls to MPI_Allreduce for vectors where only one processor participates.
git-svn-id: https://svn.dealii.org/trunk@27859
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kronbichler [Thu, 27 Dec 2012 13:12:28 +0000 (13:12 +0000)]
Avoid compiler warning.
git-svn-id: https://svn.dealii.org/trunk@27858
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bangerth [Thu, 27 Dec 2012 01:50:21 +0000 (01:50 +0000)]
Hm, that doesn't work. Try std::fpclassify instead.
git-svn-id: https://svn.dealii.org/trunk@27857
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bangerth [Wed, 26 Dec 2012 20:18:04 +0000 (20:18 +0000)]
Fix another one.
git-svn-id: https://svn.dealii.org/trunk@27856
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bangerth [Wed, 26 Dec 2012 20:17:45 +0000 (20:17 +0000)]
Fix typos.
git-svn-id: https://svn.dealii.org/trunk@27855
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bangerth [Tue, 25 Dec 2012 15:05:57 +0000 (15:05 +0000)]
Avoid an ambiguity between ::fpclassify and std::fpclassify with recent Intel compilers.
git-svn-id: https://svn.dealii.org/trunk@27854
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bangerth [Tue, 25 Dec 2012 14:57:35 +0000 (14:57 +0000)]
Fix an issue with the Intel compiler (reported by Ted Kord).
git-svn-id: https://svn.dealii.org/trunk@27853
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kanschat [Fri, 21 Dec 2012 15:24:03 +0000 (15:24 +0000)]
identify branch on new server
git-svn-id: https://svn.dealii.org/trunk@27851
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kronbichler [Fri, 21 Dec 2012 14:15:12 +0000 (14:15 +0000)]
Simplify construction of dof connectivity graph by using deal.II data structures. Those are a little slower, but much more reliable and concise.
git-svn-id: https://svn.dealii.org/trunk@27850
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heister [Fri, 21 Dec 2012 02:51:02 +0000 (02:51 +0000)]
make indent
git-svn-id: https://svn.dealii.org/trunk@27847
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heister [Fri, 21 Dec 2012 02:47:21 +0000 (02:47 +0000)]
call indent for each file separately in the hope that this fixes some strange indentation inconsistencies
git-svn-id: https://svn.dealii.org/trunk@27846
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kronbichler [Wed, 19 Dec 2012 11:34:13 +0000 (11:34 +0000)]
Explicitly instantiate some internal structs to ensure these are always generated.
git-svn-id: https://svn.dealii.org/trunk@27827
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kronbichler [Wed, 19 Dec 2012 11:07:02 +0000 (11:07 +0000)]
Use generic instantiation procedure for selecting vectors in solution transfer.
git-svn-id: https://svn.dealii.org/trunk@27826
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kronbichler [Mon, 17 Dec 2012 09:22:26 +0000 (09:22 +0000)]
Matrix-vector product with deal.II vectors and Trilinos matrix are can be readily performed.
git-svn-id: https://svn.dealii.org/trunk@27825
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kronbichler [Fri, 14 Dec 2012 12:13:31 +0000 (12:13 +0000)]
Add one more access function. Reindent comments.
git-svn-id: https://svn.dealii.org/trunk@27823
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bangerth [Fri, 14 Dec 2012 02:41:42 +0000 (02:41 +0000)]
Augment a comment.
git-svn-id: https://svn.dealii.org/trunk@27821
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bangerth [Fri, 14 Dec 2012 02:30:13 +0000 (02:30 +0000)]
Augment documentation some more.
git-svn-id: https://svn.dealii.org/trunk@27820
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bangerth [Thu, 13 Dec 2012 07:15:16 +0000 (07:15 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@27805
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maier [Wed, 12 Dec 2012 21:23:02 +0000 (21:23 +0000)]
Some minor bugfixes in the testsuite
git-svn-id: https://svn.dealii.org/trunk@27802
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kronbichler [Wed, 12 Dec 2012 15:31:35 +0000 (15:31 +0000)]
Undo 27799 on vectorization as the new trick did the same thing and obscured things.
git-svn-id: https://svn.dealii.org/trunk@27801
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kronbichler [Wed, 12 Dec 2012 14:37:49 +0000 (14:37 +0000)]
Removed two more occurences of inproper use of reinterpret_cast
git-svn-id: https://svn.dealii.org/trunk@27800
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kronbichler [Wed, 12 Dec 2012 14:19:47 +0000 (14:19 +0000)]
Replace reinterpret_cast by static_cast in access to individual elements of vectorized data types.
git-svn-id: https://svn.dealii.org/trunk@27799
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kronbichler [Wed, 12 Dec 2012 13:55:01 +0000 (13:55 +0000)]
Avoid some more reinterpret_cast
git-svn-id: https://svn.dealii.org/trunk@27797
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kronbichler [Wed, 12 Dec 2012 13:38:38 +0000 (13:38 +0000)]
Avoid reinterpret_cast by making the declaration of struct ShapeFunctionData in FEValuesViews::Scalar/Vector public.
git-svn-id: https://svn.dealii.org/trunk@27796
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bangerth [Wed, 12 Dec 2012 12:58:51 +0000 (12:58 +0000)]
There used to be a requirement that threads can only be joined by the thread that created it. This doesn't appear to be the case any more, so we can't rely on it any more to take shortcuts.
git-svn-id: https://svn.dealii.org/trunk@27795
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bangerth [Wed, 12 Dec 2012 12:21:26 +0000 (12:21 +0000)]
Mention r27793. Also reorder things a bit.
git-svn-id: https://svn.dealii.org/trunk@27794
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bangerth [Wed, 12 Dec 2012 12:21:11 +0000 (12:21 +0000)]
Patch by Alexander Grayver: Release memort in SparseDirectMUMPS.
git-svn-id: https://svn.dealii.org/trunk@27793
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kronbichler [Mon, 10 Dec 2012 10:33:22 +0000 (10:33 +0000)]
Fix one border case in initialization on non-constant Jacobians.
git-svn-id: https://svn.dealii.org/trunk@27789
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kanschat [Sun, 9 Dec 2012 11:01:53 +0000 (11:01 +0000)]
add charset
git-svn-id: https://svn.dealii.org/trunk@27787
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kronbichler [Sun, 9 Dec 2012 10:06:32 +0000 (10:06 +0000)]
ConstraintMatrix can perform distribute_local_to_global also in non-closed form as long as there are no constraints without any errors (this enables the use of a ConstraintMatrix dummy when one wants to more quickly write into sparse matrices).
git-svn-id: https://svn.dealii.org/trunk@27786
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kronbichler [Sun, 9 Dec 2012 09:57:03 +0000 (09:57 +0000)]
One more reindentation/refill of comments.
git-svn-id: https://svn.dealii.org/trunk@27785
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kronbichler [Sun, 9 Dec 2012 09:56:21 +0000 (09:56 +0000)]
Small update in comment.
git-svn-id: https://svn.dealii.org/trunk@27784
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kronbichler [Sun, 9 Dec 2012 09:55:15 +0000 (09:55 +0000)]
Reindent/refill comments in a few files to improve readability.
git-svn-id: https://svn.dealii.org/trunk@27783
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bangerth [Sat, 8 Dec 2012 19:54:35 +0000 (19:54 +0000)]
Add operator!=.
git-svn-id: https://svn.dealii.org/trunk@27782
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kanschat [Sat, 8 Dec 2012 19:09:01 +0000 (19:09 +0000)]
add a note
git-svn-id: https://svn.dealii.org/trunk@27781
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kanschat [Sat, 8 Dec 2012 18:35:14 +0000 (18:35 +0000)]
missing properties
git-svn-id: https://svn.dealii.org/trunk@27780
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bangerth [Fri, 7 Dec 2012 19:55:47 +0000 (19:55 +0000)]
Doc updates.
git-svn-id: https://svn.dealii.org/trunk@27779
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bangerth [Fri, 7 Dec 2012 19:55:13 +0000 (19:55 +0000)]
Minor doc updates.
git-svn-id: https://svn.dealii.org/trunk@27778
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bangerth [Fri, 7 Dec 2012 09:46:13 +0000 (09:46 +0000)]
Update documentation.
git-svn-id: https://svn.dealii.org/trunk@27777
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kronbichler [Fri, 7 Dec 2012 09:07:10 +0000 (09:07 +0000)]
Improve comments. Improve check for over-/underflow in l2_norm slightly.
git-svn-id: https://svn.dealii.org/trunk@27776
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kronbichler [Thu, 6 Dec 2012 14:14:07 +0000 (14:14 +0000)]
Revised get_function_xxx methods: Put the evaluation part into separate functions. This makes code simpler as several user methods can use the same implementation. Also, we avoid to recompile them for _every_ global VectorType with exactly the same content. This speeds up compilation of fe_values.o by about a factor 2.
git-svn-id: https://svn.dealii.org/trunk@27775
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kanschat [Thu, 6 Dec 2012 07:45:45 +0000 (07:45 +0000)]
Replace old repository links
git-svn-id: https://svn.dealii.org/trunk@27774
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bangerth [Wed, 5 Dec 2012 21:11:38 +0000 (21:11 +0000)]
Move inline functions to where they should be.
git-svn-id: https://svn.dealii.org/trunk@27773
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heister [Wed, 5 Dec 2012 17:27:56 +0000 (17:27 +0000)]
update publication
git-svn-id: https://svn.dealii.org/trunk@27767
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maier [Tue, 4 Dec 2012 22:46:55 +0000 (22:46 +0000)]
Add a test for GeometryInfo<dim>::face_to_cell_vertices and face_to_cell_lines
git-svn-id: https://svn.dealii.org/trunk@27758
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maier [Tue, 4 Dec 2012 22:46:53 +0000 (22:46 +0000)]
Bugfix: Implement correct return values for ->face_flip and ->face_rotation in 1d and 2d
This fixes a regression introduced with r27714 which made
GeometryInfo<2>::child_cell_on_face face_flip aware in 2d.
git-svn-id: https://svn.dealii.org/trunk@27757
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kanschat [Tue, 4 Dec 2012 17:56:36 +0000 (17:56 +0000)]
more big output files removed
git-svn-id: https://svn.dealii.org/trunk@27756
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kanschat [Tue, 4 Dec 2012 17:42:19 +0000 (17:42 +0000)]
remove large output files from several steps
git-svn-id: https://svn.dealii.org/trunk@27755
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young [Tue, 4 Dec 2012 13:37:15 +0000 (13:37 +0000)]
Give SLEPc the MPI_InitFinalize interface like what PETSc has.
git-svn-id: https://svn.dealii.org/trunk@27753
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bangerth [Tue, 4 Dec 2012 06:09:36 +0000 (06:09 +0000)]
Fix double-free caused by wrong copy constructor of FESystem.
git-svn-id: https://svn.dealii.org/trunk@27749
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heister [Tue, 4 Dec 2012 05:54:31 +0000 (05:54 +0000)]
merge to add test to mainline
git-svn-id: https://svn.dealii.org/trunk@27748
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maier [Mon, 3 Dec 2012 22:58:22 +0000 (22:58 +0000)]
Deuglify
Also, try to find a fixpoint (*) for initializer lists under astyle
(*) as usual, with the help of a fixpoint iteration...
git-svn-id: https://svn.dealii.org/trunk@27742
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heister [Mon, 3 Dec 2012 19:44:54 +0000 (19:44 +0000)]
make indent
git-svn-id: https://svn.dealii.org/trunk@27737
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kanschat [Mon, 3 Dec 2012 14:21:08 +0000 (14:21 +0000)]
reformat documentation and add memory consumption
git-svn-id: https://svn.dealii.org/trunk@27728
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bangerth [Mon, 3 Dec 2012 08:16:25 +0000 (08:16 +0000)]
Avoid a couple of (stupid) warnings.
git-svn-id: https://svn.dealii.org/trunk@27727
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bangerth [Mon, 3 Dec 2012 07:18:50 +0000 (07:18 +0000)]
Reformat one statement.
git-svn-id: https://svn.dealii.org/trunk@27726
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maier [Sat, 1 Dec 2012 21:25:44 +0000 (21:25 +0000)]
Reintroduce the old make_periodicity_constraints interface as well (because this one is _very_ convenient)
git-svn-id: https://svn.dealii.org/trunk@27722
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maier [Sat, 1 Dec 2012 21:25:14 +0000 (21:25 +0000)]
Add some Assertions, reindent
git-svn-id: https://svn.dealii.org/trunk@27721
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maier [Sat, 1 Dec 2012 17:18:05 +0000 (17:18 +0000)]
update changes.h
git-svn-id: https://svn.dealii.org/trunk@27719
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maier [Sat, 1 Dec 2012 17:17:49 +0000 (17:17 +0000)]
A new test for make_periodicity_constraints
git-svn-id: https://svn.dealii.org/trunk@27718
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maier [Sat, 1 Dec 2012 17:17:25 +0000 (17:17 +0000)]
Bugfix: Make DoFTools::make_periodicity_constraints orientation aware
With this it is now possible to prescribe an orientation for the low level
interface, the high level interface will detect the necessary orientation
automatically, *yay*.
git-svn-id: https://svn.dealii.org/trunk@27717
0785d39b -7218-0410-832d-
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maier [Sat, 1 Dec 2012 17:17:02 +0000 (17:17 +0000)]
A new test for GridTools::collect_periodic_face_pairs
git-svn-id: https://svn.dealii.org/trunk@27716
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maier [Sat, 1 Dec 2012 17:16:43 +0000 (17:16 +0000)]
Bugfixes:
- Refactor GridTools::collect_periodic_cell_pairs to GridTools::collect_periodic_face_pairs
- Make GridTools::collect_periodix_face_pairs orientation (orientation, flip, rotation) aware
git-svn-id: https://svn.dealii.org/trunk@27715
0785d39b -7218-0410-832d-
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maier [Sat, 1 Dec 2012 17:16:18 +0000 (17:16 +0000)]
Bugfix: Fix GeometryInfo<2>::child_cell_on_face to respect face_flip
This change does not trigger any regression in the test suite
git-svn-id: https://svn.dealii.org/trunk@27714
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bangerth [Sat, 1 Dec 2012 12:37:39 +0000 (12:37 +0000)]
Comment out unused function arguments.
git-svn-id: https://svn.dealii.org/trunk@27713
0785d39b -7218-0410-832d-
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bangerth [Thu, 29 Nov 2012 23:42:30 +0000 (23:42 +0000)]
Remove now outdated files.
git-svn-id: https://svn.dealii.org/trunk@27709
0785d39b -7218-0410-832d-
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bangerth [Thu, 29 Nov 2012 16:18:56 +0000 (16:18 +0000)]
Update results for PETSc 3.3.
git-svn-id: https://svn.dealii.org/trunk@27705
0785d39b -7218-0410-832d-
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bangerth [Thu, 29 Nov 2012 16:16:47 +0000 (16:16 +0000)]
Remove a test that checks PETSc's Richardson solver but that has never worked and that with PETSc 3.3 now actually aborts.
git-svn-id: https://svn.dealii.org/trunk@27704
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kronbichler [Thu, 29 Nov 2012 16:05:54 +0000 (16:05 +0000)]
Allow ConstraintMatrix::distribute_local_to_global with ChunkSparseMatrix.
git-svn-id: https://svn.dealii.org/trunk@27703
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bangerth [Thu, 29 Nov 2012 15:07:56 +0000 (15:07 +0000)]
Reindent a couple comments. Primarily do so to trigger an automated run of the
testsuite to see if the new setup works.
git-svn-id: https://svn.dealii.org/trunk@27702
0785d39b -7218-0410-832d-
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