Add AssertThrow to catch the not implemented case

Highlight note in MassOperator doc

Merge pull request #14090 from bergbauer/mask_for_dg

FEEvaluationBase::read_write_operation_contiguous enable masking

Merge pull request #13962 from tjhei/hdf_empty

Support HDF5 output with one rank having no cells

Merge pull request #14086 from tjhei/doc-sym-tensor-friends

doxygen: fix SymmetricTensor friends

Merge pull request #14093 from peterrum/sparse_matrix_fix_formating

Fix formatting

Merge pull request #14091 from peterrum/make_periodicity_constraints_move_asserts

DoFTools::make_periodicity_constraints move asserts

Merge pull request #14092 from gassmoeller/fix_mapping_cartesian

Bugfix: Use correct relative tolerance in MappingCartesian assert.

Add changelog entry

Merge pull request #14059 from jh66637/only_find_marked_cells

find_active_cell_around_point should only find cells with marked vertices

Merge pull request #14084 from peterrum/merge_triangulations_zero_tolerance

Be explicit regarding zero tolerance in merge_triangulations

Fix formating

DoFTools::make_periodicity_constraints move asserts

Use correct tolerance in MappingCartesian check.

fix find_active_cell_around_point to marked cells or no cell

Co-authored-by: Marc Fehling <mafehling.git@gmail.com>
Co-authored-by: Peter Munch <peterrmuench@gmail.com>

Merge pull request #14055 from peterrum/docu_global_indices

Add cross-references for global indices

Merge pull request #14080 from kronbichler/use_line_indices

Use get_line_indices_of_cell in DoFHandlerPolicy

Merge pull request #14082 from kronbichler/restructure_refinement_3d

Restructure execute_refinement(Triangulation<3, spacedim>&)

Merge pull request #14087 from tjhei/dox-formula-errors

doxygen: fix errors in formulas

doxygen: fix errors in formulas

doxygen: fix SymmetricTensor friends

- remove duplicate instances of deviator, trace, etc.
- put documentation where doxygen can see it

Merge pull request #14085 from peterrum/read_write_operation_3_masking

FEEvaluationBase::read_write_operation case 3: enable masking

FEEvaluationBase::read_write_operation case 3: enable masking

Be explicit regarding zero tolerance in merge_triangulations

Merge pull request #14081 from kronbichler/work_with_raw_coarsen_flags

Add function to extract raw coarsen flags

Merge pull request #14076 from kronbichler/improve_mf_renumbering

Use faster data structure to compute matrix-free renumbering

Add mask

Use get_line_indices_of_cell in DoFHandlerPolicy

Merge pull request #14083 from kronbichler/fix_mg_no_indices

Fix bug when we have no line dofs in assignment/renumbering of face mg dofs

Fix bug when we have no DoFs on a line

Restructure execture_refinement(Triangulation<3, spacedim>)

Merge pull request #14078 from masterleinad/remove_remaining_deprecations_new

Remove remaining deprecations

Merge pull request #14079 from kronbichler/fix_test2

Fix another matrix-free test case

Merge pull request #14070 from masterleinad/remove_cellid_to_cell

Remove CellId::to_cell

Add function to extract raw coarsen flags

Merge pull request #14077 from kronbichler/warning_1

Fix warning about possibly uninitialized variables

Update doc/news/changes/incompatibilities/20220629Arndt

Co-authored-by: Marc Fehling <mafehling.git@gmail.com>

Fix another matrix-free test case

Use faster data structure to compute matrix-free renumbering

Also remove explicit instantiations

changelog entry

Remove Arkode::reinit_vector

Remove ParticleHandler::locally_relevant_ids()

Remove QTrapezoid

Fix warning about possibly uninitialized variables

Remove CellId::to_cell

Merge pull request #14066 from kronbichler/speed_up_access_dof_indices

Speed up DoFAccessorImplementation::get_dof_indices

Merge pull request #14075 from peterrum/MGTransferBlockMatrixFree_other_block_vector_type

MGTransferBlockMatrixFree: allow to copy form/to other type of block vector

Merge pull request #14074 from peterrum/MGTransferGlobalCoarsening_min_max_level

Add MGTransferGlobalCoarsening::min_level() and max_level()

Add assertions for fe_index in MG case

Use fast access to line indices to speed up get_dof_indices

Provide fast access function to all line indices of cell

MGTransferBlockMatrixFree: allow to copy form other type of block vector

Add MGTransferGlobalCoarsening::min_level() and max_level()

Add cross-references for global indices

Merge pull request #14057 from kronbichler/fix_reinit_mf

Fix bug in MatrixFree::reinit for MG levels with empty process

Merge pull request #13951 from kronbichler/simplify_some_code

MatrixFree: Simplify some code in initialization of DoF indices

MatrixFree: Simplify some code in initialization of DoF indices

Merge pull request #14020 from kronbichler/use_shortcuts

Avoid unnecessary locally_relevant_dofs in mg_transfer_internal

Merge pull request #14051 from kronbichler/cleanup_mg_face

DoFHandlerPolicy: Speed up function renumber_face_mg_dofs

Merge pull request #14063 from kronbichler/improve_access_to_dofs

DoFAccessor: Streamline access to dof indices

Merge pull request #13866 from kronbichler/cleanup_raviart_thomas_polynomials

Clean up PolynomialsRaviartThomas

Merge pull request #14067 from kronbichler/improve_reference_cell

Speed up ReferenceCell::standard_vs_true_line_orientation

Merge pull request #13930 from kronbichler/speedup_cell_vertex_indices_cache

Speed up computation of cell vertex indices cache

Merge pull request #14064 from masterleinad/remove_xdmf_content

Remove deprecated XDMFEntry::get_xdmf_content

Merge pull request #14062 from kronbichler/improve_assert

Simplify assertion by AssertIndexRange

Merge pull request #14048 from masterleinad/remove_unqualified_functions

Remove unqualified ContantFunction and ZeroFunction

Merge pull request #14061 from sebproell/fe-eval-no-vectorization

Fix some VectorizedArrayTypes for non-default vectorization

Speed up ReferenceCell::standard_vs_true_line_orientation

Remove deprecated XDMFEntry::get_xdmf_content

DoFAccessor: Streamline access to dof indices

Fix some VectorizedArrayTypes for non-default vectorization

Further code cleanup

DoFHandlerPolicy: Speed up function renumber_face_mg_dofs

Simplify assertion by AssertIndexRange

Merge pull request #14060 from masterleinad/remove_deprecated_lac_parallel_block_vector

Remove deprecated header file lac/parallel_block_vector.h

Merge pull request #14052 from kronbichler/index_set_improve

Small improvement for IndexSet::add_ranges_internal

Fix the reamaining occurrences

Merge pull request #14050 from tamiko/fix_cuda_tests

User projects: Make sure that CMAKE_CUDA_HOST_COMPILER is set.

Merge pull request #14049 from tamiko/fix_cuda_warnings

fix a warning when compiling with cuda support

Merge pull request #14058 from kronbichler/fix_tests

Fix a few MatrixFree tests

Fix a few tests

Fix bug in MatrixFree::reinit for MG levels with empty process

Merge pull request #14014 from peterrum/mg_dg_hp_test

Add test (MF+DG+hp)

Merge pull request #13842 from peterrum/build_interface_constraints_wedges

FESystem::build_interface_constraints() for wedges/pyramids

Merge pull request #14054 from peterrum/traling_const

Remove trailing const

Remove traling const

Add test (MG+DG+hp)

FESystem::build_interface_constraints() for wedges/pyramids

Small improvement for IndexSet::add_ranges_internal

User projects: Make sure that CMAKE_CUDA_HOST_COMPILER is set.

fix a warning when compiling with cuda support

dealii/include/deal.II/matrix_free/cuda_matrix_free.templates.h:1027:17:
    warning: loop variable ‘cell’ creates a copy from type ‘const
    dealii::TriaActiveIterator<dealii::CellAccessor<3, 3> >’
    [-Wrange-loop-construct]
dealii/include/deal.II/matrix_free/cuda_matrix_free.templates.h:1027:17:
    note: use reference type to prevent copying
 1027 |                 for (const auto cell :
      |                 ^~~~
      |                 &

Merge pull request #14037 from masterleinad/deprecate_matrixfree

Remove deprecated MatrixFree functionalities

Merge pull request #14043 from masterleinad/remove_deprecated_qprojector

Remove deprecated QProjector member functions

Merge pull request #14044 from tamiko/step_81_tutorial_fixes

step-81: Mention example step in the tutorial lists

Merge pull request #14045 from drwells/indexset-test-header

Include index_set.h in two more tests.

Merge pull request #14047 from masterleinad/remove_deprecated_dof_handler

Remove DoFHandler's initialize and set_fe

Merge pull request #14040 from masterleinad/deprecate_dof_tools

Remove deprecated DoFTools functions

Also add specialization for quadrilaterals