]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
20 months agoAdd changelog entry 14594/head
Jean-Paul Pelteret [Fri, 23 Dec 2022 16:54:53 +0000 (17:54 +0100)]
Add changelog entry

20 months agoAdd tests
Jean-Paul Pelteret [Fri, 23 Dec 2022 16:53:01 +0000 (17:53 +0100)]
Add tests

20 months agoAdd ScratchData::reinit() for interfaces that does not require arguments for the...
Jean-Paul Pelteret [Fri, 23 Dec 2022 11:12:23 +0000 (12:12 +0100)]
Add ScratchData::reinit() for interfaces that does not require arguments for the subfaces

20 months agoAdd hp support for interfaces to ScratchData
Jean-Paul Pelteret [Tue, 20 Dec 2022 20:29:40 +0000 (21:29 +0100)]
Add hp support for interfaces to ScratchData

20 months agoMerge pull request #14611 from jppelteret/fe_interface_values_02
Daniel Arndt [Wed, 28 Dec 2022 22:09:25 +0000 (23:09 +0100)]
Merge pull request #14611 from jppelteret/fe_interface_values_02

20 months agoAdd a changelog entry 14611/head
Jean-Paul Pelteret [Wed, 28 Dec 2022 19:32:15 +0000 (20:32 +0100)]
Add a changelog entry

20 months agoExtend hp support in FEInterfaceValues
Jean-Paul Pelteret [Fri, 23 Dec 2022 16:50:41 +0000 (17:50 +0100)]
Extend hp support in FEInterfaceValues

20 months agoExtend FEInterfaceValues::reinit() to take [q,mapping,fe]_index
Jean-Paul Pelteret [Tue, 20 Dec 2022 20:17:27 +0000 (21:17 +0100)]
Extend FEInterfaceValues::reinit() to take [q,mapping,fe]_index

20 months agoUse delegate constructors in FEInterfaceValues
Jean-Paul Pelteret [Tue, 20 Dec 2022 19:54:12 +0000 (20:54 +0100)]
Use delegate constructors in FEInterfaceValues

20 months agoMerge pull request #14618 from Rombur/fix_test_kokkos_memory_space
Daniel Arndt [Wed, 28 Dec 2022 17:20:33 +0000 (18:20 +0100)]
Merge pull request #14618 from Rombur/fix_test_kokkos_memory_space

20 months agoMerge pull request #14617 from jppelteret/bugfix_01
Daniel Arndt [Wed, 28 Dec 2022 08:21:44 +0000 (09:21 +0100)]
Merge pull request #14617 from jppelteret/bugfix_01

Fixes https://github.com/dealii/dealii/issues/14582

20 months agoMerge pull request #14616 from Rombur/fix_kokkos_memory_space
David Wells [Wed, 28 Dec 2022 02:30:13 +0000 (21:30 -0500)]
Merge pull request #14616 from Rombur/fix_kokkos_memory_space

Remove incorrect static_assert when using CUDA-aware MPI

20 months agoAdd ADOL-C back into serial Jenkins build 14617/head
Jean-Paul Pelteret [Tue, 27 Dec 2022 21:51:53 +0000 (22:51 +0100)]
Add ADOL-C back into serial Jenkins build

20 months agoFix free function specialisations for ADOL-C types
Jean-Paul Pelteret [Tue, 27 Dec 2022 21:46:21 +0000 (22:46 +0100)]
Fix free function specialisations for ADOL-C types

20 months agoFix ADOL-C tests broken by presence of static variables.
Jean-Paul Pelteret [Tue, 27 Dec 2022 21:42:59 +0000 (22:42 +0100)]
Fix ADOL-C tests broken by presence of static variables.

20 months agoFix test output: replace CUDA with Default 14618/head
Bruno Turcksin [Tue, 27 Dec 2022 19:55:19 +0000 (14:55 -0500)]
Fix test output: replace CUDA with Default

20 months agoRemove incorrect static_assert when using CUDA-aware MPI 14616/head
Bruno Turcksin [Tue, 27 Dec 2022 19:09:31 +0000 (14:09 -0500)]
Remove incorrect static_assert when using CUDA-aware MPI

20 months agoMerge pull request #14576 from tjhei/jenkins-new-serial
Matthias Maier [Tue, 27 Dec 2022 16:47:40 +0000 (10:47 -0600)]
Merge pull request #14576 from tjhei/jenkins-new-serial

CI: new serial Jenkins

20 months agodisable adolc tests 14576/head
Timo Heister [Sun, 18 Dec 2022 21:13:11 +0000 (16:13 -0500)]
disable adolc tests

20 months agoCI: new serial Jenkins
Timo Heister [Wed, 14 Dec 2022 19:14:40 +0000 (14:14 -0500)]
CI: new serial Jenkins

Move the serial tester to ci.tjhei.info.

update

20 months agoMerge pull request #14615 from tamiko/fix_prm_concurrency
Matthias Maier [Tue, 27 Dec 2022 00:07:55 +0000 (18:07 -0600)]
Merge pull request #14615 from tamiko/fix_prm_concurrency

CMake: avoid race conditions between concurrent prm tests

20 months agoCMake: avoid race conditions between concurrent prm tests 14615/head
Matthias Maier [Mon, 26 Dec 2022 04:01:03 +0000 (22:01 -0600)]
CMake: avoid race conditions between concurrent prm tests

We need to serialize all tests that share a common executable target.
This involves tests with .threads=N. and .mpirun=N. annotation, as well
as tests with parameter files (that might share a common executable
target).

Running multiple variants of tests with the same target executable in
parallel triggers a race condition where the same (not yet existent)
target is built concurrently leading to undefined outcomes.

20 months agoCMake: remove old prm-test workarounds
Matthias Maier [Mon, 26 Dec 2022 03:45:01 +0000 (21:45 -0600)]
CMake: remove old prm-test workarounds

20 months agoMerge pull request #14614 from drwells/isotropic-refinement-cleanup
Peter Munch [Sun, 25 Dec 2022 07:32:42 +0000 (08:32 +0100)]
Merge pull request #14614 from drwells/isotropic-refinement-cleanup

Isotropic refinement cleanup

20 months agoisotropic refinement: clean up some more comments. 14614/head
David Wells [Sat, 24 Dec 2022 21:09:33 +0000 (16:09 -0500)]
isotropic refinement: clean up some more comments.

20 months agoMerge pull request #14613 from bangerth/doc-87
David Wells [Sat, 24 Dec 2022 21:02:42 +0000 (16:02 -0500)]
Merge pull request #14613 from bangerth/doc-87

Better indent documentation of class Function.

20 months agoisotropic refinement: convert to unsigned int.
David Wells [Sat, 24 Dec 2022 20:59:14 +0000 (15:59 -0500)]
isotropic refinement: convert to unsigned int.

20 months agoisotropic refinement: get rid of 'if (true)'.
David Wells [Sat, 24 Dec 2022 20:53:56 +0000 (15:53 -0500)]
isotropic refinement: get rid of 'if (true)'.

20 months agoisotropic refinement: clean up some comments.
David Wells [Sat, 24 Dec 2022 20:53:08 +0000 (15:53 -0500)]
isotropic refinement: clean up some comments.

20 months agoisotropic refinement: add some more test output.
David Wells [Sat, 24 Dec 2022 20:51:18 +0000 (15:51 -0500)]
isotropic refinement: add some more test output.

These don't print anything because the lines are all consistently oriented.

20 months agoisotropic refinement: remove some extra dealii:: qualifications.
David Wells [Sat, 24 Dec 2022 20:50:07 +0000 (15:50 -0500)]
isotropic refinement: remove some extra dealii:: qualifications.

20 months agoBetter indent documentation of class Function. 14613/head
Wolfgang Bangerth [Sat, 24 Dec 2022 18:13:53 +0000 (11:13 -0700)]
Better indent documentation of class Function.

20 months agoMerge pull request #14600 from luca-heltai/changelog_hp_feiv
Peter Munch [Sat, 24 Dec 2022 10:42:07 +0000 (11:42 +0100)]
Merge pull request #14600 from luca-heltai/changelog_hp_feiv

Add changelog for hp support in fe_interface_values

20 months agoAdd changelog for hp-fe_interface_values 14600/head
Marco Feder [Tue, 20 Dec 2022 23:47:54 +0000 (00:47 +0100)]
Add changelog for hp-fe_interface_values

20 months agoMerge pull request #14612 from tjhei/tridiagonal_mat_cleanup
Peter Munch [Sat, 24 Dec 2022 08:43:39 +0000 (09:43 +0100)]
Merge pull request #14612 from tjhei/tridiagonal_mat_cleanup

small cleanup in tridiagonal_matrix.cc

20 months agosmall cleanup in tridiagonal_matrix.cc 14612/head
Timo Heister [Fri, 23 Dec 2022 19:24:27 +0000 (14:24 -0500)]
small cleanup in tridiagonal_matrix.cc

20 months agoMerge pull request #14603 from peterrum/warning
Daniel Arndt [Thu, 22 Dec 2022 00:07:31 +0000 (19:07 -0500)]
Merge pull request #14603 from peterrum/warning

20 months agoMerge pull request #14593 from drwells/compress-face-and-line-data
Timo Heister [Wed, 21 Dec 2022 19:19:40 +0000 (14:19 -0500)]
Merge pull request #14593 from drwells/compress-face-and-line-data

Compress face and line data

20 months agoFix warning 14603/head
Peter Munch [Wed, 21 Dec 2022 17:13:50 +0000 (18:13 +0100)]
Fix warning

20 months agoMerge pull request #14598 from masterleinad/dont_install_mold
David Wells [Wed, 21 Dec 2022 16:11:20 +0000 (11:11 -0500)]
Merge pull request #14598 from masterleinad/dont_install_mold

Don't install mold linker in CI

20 months agoMerge pull request #14592 from luca-heltai/petsc-block-matrix-to-nestmat
David Wells [Wed, 21 Dec 2022 16:09:48 +0000 (11:09 -0500)]
Merge pull request #14592 from luca-heltai/petsc-block-matrix-to-nestmat

PETScWrappers:BlockSparseMatrix: create PETSc MATNEST

21 months agoMerge pull request #14575 from luca-heltai/petsc-mat-mpi-getter
David Wells [Wed, 21 Dec 2022 14:07:17 +0000 (09:07 -0500)]
Merge pull request #14575 from luca-heltai/petsc-mat-mpi-getter

Petsc mat mpi getter

21 months agoDon't install mold linker in CI 14598/head
Daniel Arndt [Wed, 21 Dec 2022 11:45:27 +0000 (06:45 -0500)]
Don't install mold linker in CI

21 months agoMerge pull request #14547 from luca-heltai/hp-FEIV
Jean-Paul Pelteret [Wed, 21 Dec 2022 06:53:08 +0000 (07:53 +0100)]
Merge pull request #14547 from luca-heltai/hp-FEIV

Add hp to FEInterfaceValues

21 months agoMerge pull request #14591 from luca-heltai/petsc-mpi-management-and-getarray
David Wells [Wed, 21 Dec 2022 01:42:54 +0000 (20:42 -0500)]
Merge pull request #14591 from luca-heltai/petsc-mpi-management-and-getarray

Petsc mpi management and getarray

21 months agoUse std::vector<bool> for line orientations. 14593/head
David Wells [Tue, 20 Dec 2022 17:03:11 +0000 (12:03 -0500)]
Use std::vector<bool> for line orientations.

This saves a further 17 MB with the 2.4 million cell tet mesh.

21 months agoFix constness. 14592/head
Luca Heltai [Tue, 20 Dec 2022 18:07:53 +0000 (19:07 +0100)]
Fix constness.

21 months agoApply suggestions from code review 14575/head
Luca Heltai [Tue, 20 Dec 2022 17:54:13 +0000 (18:54 +0100)]
Apply suggestions from code review

Co-authored-by: David Wells <drwells@email.unc.edu>
21 months agoCompress face types to a single bit.
David Wells [Tue, 20 Dec 2022 15:20:16 +0000 (10:20 -0500)]
Compress face types to a single bit.

This lowers memory consumption from 712 MB to 707 MB for my 2.4 million
cell tet mesh.

21 months agoMerge pull request #14587 from drwells/memory-optimizations
David Wells [Tue, 20 Dec 2022 17:26:08 +0000 (12:26 -0500)]
Merge pull request #14587 from drwells/memory-optimizations

Memory optimizations

21 months agoApply suggestions from code review
Luca Heltai [Tue, 20 Dec 2022 16:45:56 +0000 (17:45 +0100)]
Apply suggestions from code review

Co-authored-by: David Wells <drwells@email.unc.edu>
21 months agoApply suggestions from code review 14591/head
Luca Heltai [Tue, 20 Dec 2022 16:42:33 +0000 (17:42 +0100)]
Apply suggestions from code review

Co-authored-by: David Wells <drwells@email.unc.edu>
21 months agoMerge pull request #14586 from tamiko/quick_quick_tests_fix
Daniel Arndt [Tue, 20 Dec 2022 13:57:46 +0000 (08:57 -0500)]
Merge pull request #14586 from tamiko/quick_quick_tests_fix

21 months agoChangeLog.
Luca Heltai [Tue, 20 Dec 2022 10:53:38 +0000 (11:53 +0100)]
ChangeLog.

21 months agoPETScWrappers:BlockSparseMatrix: create PETSc MATNEST
Stefano Zampini [Thu, 10 Nov 2022 17:22:19 +0000 (18:22 +0100)]
PETScWrappers:BlockSparseMatrix: create PETSc MATNEST

21 months agoChangeLog.
Luca Heltai [Tue, 20 Dec 2022 10:25:42 +0000 (11:25 +0100)]
ChangeLog.

21 months agoAdd hp to FEInterfaceValues 14547/head
Marco Feder [Thu, 8 Dec 2022 11:03:27 +0000 (12:03 +0100)]
Add hp to FEInterfaceValues

21 months agoPETScWrappers::MatrixBase remove improper usage of WORLD
Stefano Zampini [Thu, 10 Nov 2022 16:54:47 +0000 (17:54 +0100)]
PETScWrappers::MatrixBase remove improper usage of WORLD

support printing a matrix that does not implement MatGetRow

21 months agoPETScWrappers::MatrixFree remove improper usage of MPI_COMM_WORLD
Stefano Zampini [Thu, 10 Nov 2022 16:53:40 +0000 (17:53 +0100)]
PETScWrappers::MatrixFree remove improper usage of MPI_COMM_WORLD

21 months agoPETScWrappers fix improper usage of WORLD and GetArray
Stefano Zampini [Thu, 10 Nov 2022 16:52:39 +0000 (17:52 +0100)]
PETScWrappers fix improper usage of WORLD and GetArray

add a method  to get the Vec

21 months agoMerge pull request #14590 from peterrum/connectivity_refactoring
Peter Munch [Tue, 20 Dec 2022 07:36:07 +0000 (08:36 +0100)]
Merge pull request #14590 from peterrum/connectivity_refactoring

Some refactoring in connectivity.h

21 months agoCMake: do not trigger install during make test 14586/head
Matthias Maier [Mon, 19 Dec 2022 16:08:50 +0000 (10:08 -0600)]
CMake: do not trigger install during make test

21 months agoCMake: return a non-zero exit code when quick tests fail
Matthias Maier [Mon, 19 Dec 2022 16:00:34 +0000 (10:00 -0600)]
CMake: return a non-zero exit code when quick tests fail

21 months agoMerge pull request #14588 from tjhei/jenkins-mpi-quick-failure
Matthias Maier [Mon, 19 Dec 2022 23:43:57 +0000 (17:43 -0600)]
Merge pull request #14588 from tjhei/jenkins-mpi-quick-failure

CI: show quicktest failures in Jenkins

21 months agoMerge pull request #14510 from masterleinad/kokkos_la_d_vector_1
Peter Munch [Mon, 19 Dec 2022 22:48:13 +0000 (23:48 +0100)]
Merge pull request #14510 from masterleinad/kokkos_la_d_vector_1

Use Kokkos in MemorySpaceData

21 months agoSome refactoring in connectivity.h 14590/head
Peter Munch [Mon, 19 Dec 2022 22:38:04 +0000 (23:38 +0100)]
Some refactoring in connectivity.h

21 months agoImprove memory usage when reading ExodusII grids. 14587/head
David Wells [Mon, 19 Dec 2022 17:41:47 +0000 (12:41 -0500)]
Improve memory usage when reading ExodusII grids.

For my big heart mesh (which has about 2.4 million elements) this lowers
peak memory consumption from 1.3 GB to 1.2 GB.

21 months agoAdd a few missing memory consumption calls/implementations.
David Wells [Mon, 19 Dec 2022 17:41:19 +0000 (12:41 -0500)]
Add a few missing memory consumption calls/implementations.

21 months agoMerge pull request #14585 from tjhei/fix_deprecated_usage_in_tests
David Wells [Mon, 19 Dec 2022 22:07:30 +0000 (17:07 -0500)]
Merge pull request #14585 from tjhei/fix_deprecated_usage_in_tests

Fix deprecated usage in tests

21 months agoCI: show quicktest failures 14588/head
Timo Heister [Mon, 19 Dec 2022 19:10:49 +0000 (14:10 -0500)]
CI: show quicktest failures

21 months agoavoid deprecated function 14585/head
Timo Heister [Mon, 19 Dec 2022 14:44:47 +0000 (09:44 -0500)]
avoid deprecated function

21 months agoavoid deprecated functions in tests
Timo Heister [Mon, 19 Dec 2022 14:39:07 +0000 (09:39 -0500)]
avoid deprecated functions in tests

fixup

fixup

21 months agoFix typo 14510/head
Daniel Arndt [Mon, 19 Dec 2022 16:28:01 +0000 (11:28 -0500)]
Fix typo

Co-authored-by: Timo Heister <timo.heister@gmail.com>
21 months agoChangelog.
Luca Heltai [Tue, 13 Dec 2022 16:44:53 +0000 (17:44 +0100)]
Changelog.

21 months agoPETScWrappers::MatrixBase: add default getter for mpi comm and constructor from Mat
Stefano Zampini [Mon, 17 Oct 2022 10:23:52 +0000 (13:23 +0300)]
PETScWrappers::MatrixBase: add default getter for mpi comm and constructor from Mat

21 months agoMerge pull request #14584 from and-salmon/step-22-link
Daniel Arndt [Mon, 19 Dec 2022 15:24:53 +0000 (10:24 -0500)]
Merge pull request #14584 from and-salmon/step-22-link

21 months agoUse Kokkos in MemorySpaceData
Daniel Arndt [Wed, 30 Nov 2022 16:32:44 +0000 (16:32 +0000)]
Use Kokkos in MemorySpaceData

21 months agoUpdate broken link in step-22 intro.dox 14584/head
Andrew Salmon [Mon, 19 Dec 2022 14:34:54 +0000 (09:34 -0500)]
Update broken link in step-22 intro.dox

21 months agoMerge pull request #14539 from drwells/rearrange-mapping-related-data
Daniel Arndt [Mon, 19 Dec 2022 13:40:52 +0000 (08:40 -0500)]
Merge pull request #14539 from drwells/rearrange-mapping-related-data

21 months agoMappingRelatedData: move to separate header and source files. 14539/head
David Wells [Tue, 6 Dec 2022 20:55:04 +0000 (15:55 -0500)]
MappingRelatedData: move to separate header and source files.

21 months agoMappingRelatedData: remove extra dealii:: qualifications.
David Wells [Tue, 6 Dec 2022 20:34:13 +0000 (15:34 -0500)]
MappingRelatedData: remove extra dealii:: qualifications.

21 months agoMerge pull request #14578 from and-salmon/typo-step-18
Daniel Arndt [Fri, 16 Dec 2022 21:02:43 +0000 (16:02 -0500)]
Merge pull request #14578 from and-salmon/typo-step-18

21 months agoCorrect typo in step-18 intro.dox 14578/head
Andrew Salmon [Fri, 16 Dec 2022 17:43:48 +0000 (12:43 -0500)]
Correct typo in step-18 intro.dox

21 months agoMerge pull request #14416 from peterrum/solver_gmres_fix
Daniel Arndt [Thu, 15 Dec 2022 13:28:41 +0000 (08:28 -0500)]
Merge pull request #14416 from peterrum/solver_gmres_fix

21 months agoFix vector access in SolverGMRES 14416/head
Peter Munch [Sat, 12 Nov 2022 15:37:44 +0000 (16:37 +0100)]
Fix vector access in SolverGMRES

21 months agoMerge pull request #14573 from bangerth/vtu-2
David Wells [Wed, 14 Dec 2022 17:04:50 +0000 (12:04 -0500)]
Merge pull request #14573 from bangerth/vtu-2

Simplify data passing to vtk_point_index_from_ijk().

21 months agoMerge pull request #14387 from peterrum/instantiation_helper_run_2
Martin Kronbichler [Wed, 14 Dec 2022 10:05:48 +0000 (11:05 +0100)]
Merge pull request #14387 from peterrum/instantiation_helper_run_2

FEEvaluation: precompile for n_q_points==2*fe_degree

21 months agoMerge pull request #14570 from peterrum/weight_fe_q_dofs_by_entity_shifted
Martin Kronbichler [Wed, 14 Dec 2022 09:47:16 +0000 (10:47 +0100)]
Merge pull request #14570 from peterrum/weight_fe_q_dofs_by_entity_shifted

Add weight_fe_q_dofs_by_entity_shifted() and compute_weights_fe_q_dofs_by_entity_shifted()

21 months agoMerge pull request #14572 from masterleinad/fix_more_array_access_warnings
Wolfgang Bangerth [Wed, 14 Dec 2022 05:15:41 +0000 (22:15 -0700)]
Merge pull request #14572 from masterleinad/fix_more_array_access_warnings

Avoid more compiler warnings about array access

21 months agoMerge pull request #14574 from luca-heltai/petsc-object-reference
Daniel Arndt [Tue, 13 Dec 2022 19:14:37 +0000 (14:14 -0500)]
Merge pull request #14574 from luca-heltai/petsc-object-reference

21 months agoChangelog. 14574/head
Luca Heltai [Tue, 13 Dec 2022 16:37:42 +0000 (17:37 +0100)]
Changelog.

21 months agoPETScWrappers::VectorBase: use PetscObjectReference
Stefano Zampini [Mon, 17 Oct 2022 10:23:18 +0000 (13:23 +0300)]
PETScWrappers::VectorBase: use PetscObjectReference

now the deal object can outlive the Vec

21 months agoRename function arguments. 14573/head
Wolfgang Bangerth [Tue, 13 Dec 2022 05:12:20 +0000 (22:12 -0700)]
Rename function arguments.

21 months agoRename a function.
Wolfgang Bangerth [Tue, 13 Dec 2022 05:09:32 +0000 (22:09 -0700)]
Rename a function.

21 months agoSimplify data passing to vtk_point_index_from_ijk().
Wolfgang Bangerth [Tue, 13 Dec 2022 05:06:02 +0000 (22:06 -0700)]
Simplify data passing to vtk_point_index_from_ijk().

21 months agoAddress warnings about unused variables 14572/head
Daniel Arndt [Mon, 12 Dec 2022 22:33:38 +0000 (17:33 -0500)]
Address warnings about unused variables

21 months agoMerge pull request #14558 from tamiko/cmake_improve_quick_tests
Daniel Arndt [Mon, 12 Dec 2022 22:19:21 +0000 (17:19 -0500)]
Merge pull request #14558 from tamiko/cmake_improve_quick_tests

21 months agoAvoid more compiler warnings about array access
Daniel Arndt [Mon, 12 Dec 2022 20:22:53 +0000 (20:22 +0000)]
Avoid more compiler warnings about array access

21 months agogitattributes: do not filter run_quick_tests.cmake script 14558/head
Matthias Maier [Sat, 10 Dec 2022 08:34:58 +0000 (02:34 -0600)]
gitattributes: do not filter run_quick_tests.cmake script

21 months agoTests: enable run quick tests in run_buildtest.cmake
Matthias Maier [Sat, 10 Dec 2022 08:33:40 +0000 (02:33 -0600)]
Tests: enable run quick tests in run_buildtest.cmake


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