Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26883 0785d39b-7218-0410-832d-ea1e28bc413d

OK. It is much better to do it the cmake way...

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26882 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26881 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26880 0785d39b-7218-0410-832d-ea1e28bc413d

Update the TODO list

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26879 0785d39b-7218-0410-832d-ea1e28bc413d

cosmetic changes

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26878 0785d39b-7218-0410-832d-ea1e28bc413d

My bad, not cmakes fault :)

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26877 0785d39b-7218-0410-832d-ea1e28bc413d

A minor cosmetic change

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26876 0785d39b-7218-0410-832d-ea1e28bc413d

A last bugfix for FindPETSC.cmake

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26875 0785d39b-7218-0410-832d-ea1e28bc413d

Remove some old parts of the code dealing with PETSc versions prior to 2.3. Add some comments.

git-svn-id: https://svn.dealii.org/trunk@26874 0785d39b-7218-0410-832d-ea1e28bc413d

Make FindPETSC.cmake work with the gentoo petsc package

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26873 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26872 0785d39b-7218-0410-832d-ea1e28bc413d

Disable for now until I've figured out were the buggy linkage comes from

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26871 0785d39b-7218-0410-832d-ea1e28bc413d

Make the warning more prominent

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26870 0785d39b-7218-0410-832d-ea1e28bc413d

So sad...

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26869 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26868 0785d39b-7218-0410-832d-ea1e28bc413d

simplify more dublicated code in fe_system

git-svn-id: https://svn.dealii.org/trunk@26867 0785d39b-7218-0410-832d-ea1e28bc413d

simplify dublicated code in fe_system

git-svn-id: https://svn.dealii.org/trunk@26866 0785d39b-7218-0410-832d-ea1e28bc413d

move test into bits because it works now

git-svn-id: https://svn.dealii.org/trunk@26865 0785d39b-7218-0410-832d-ea1e28bc413d

update test output

git-svn-id: https://svn.dealii.org/trunk@26864 0785d39b-7218-0410-832d-ea1e28bc413d

update tests for FESystem

git-svn-id: https://svn.dealii.org/trunk@26863 0785d39b-7218-0410-832d-ea1e28bc413d

FESystem can now deal with n_elements==0 for a block. Remove a ton of dublicated code in the process.

git-svn-id: https://svn.dealii.org/trunk@26862 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Check also for fullfilled deps in Find...

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26861 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26860 0785d39b-7218-0410-832d-ea1e28bc413d

A more complete FindUMFPACK.cmake module

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26859 0785d39b-7218-0410-832d-ea1e28bc413d

Fixups in the Find modules

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26858 0785d39b-7218-0410-832d-ea1e28bc413d

Change make_dependencies to ignore -D command line options rather than error out

git-svn-id: https://svn.dealii.org/trunk@26857 0785d39b-7218-0410-832d-ea1e28bc413d

Move a piece of code where it is necessary.

git-svn-id: https://svn.dealii.org/trunk@26856 0785d39b-7218-0410-832d-ea1e28bc413d

benchmark: add test for plotting

git-svn-id: https://svn.dealii.org/trunk@26855 0785d39b-7218-0410-832d-ea1e28bc413d

Last Update

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26854 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26853 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Set the correct variable

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26852 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Use #ifdef instead of #if

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26851 0785d39b-7218-0410-832d-ea1e28bc413d

Don't show Boost_DIR if contrib boost is successfully set up.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26850 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Actually install the boost headers...

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26849 0785d39b-7218-0410-832d-ea1e28bc413d

extend documentation

git-svn-id: https://svn.dealii.org/trunk@26848 0785d39b-7218-0410-832d-ea1e28bc413d

typo in documentation

git-svn-id: https://svn.dealii.org/trunk@26847 0785d39b-7218-0410-832d-ea1e28bc413d

Say which section can't be entered in an assertion.

git-svn-id: https://svn.dealii.org/trunk@26846 0785d39b-7218-0410-832d-ea1e28bc413d

Remove workarounds for DEAL_II_ARRAY_ARG_BUG from the source

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26845 0785d39b-7218-0410-832d-ea1e28bc413d

Remove workarounds for DEAL_II_LONG_DOUBLE_LOOP_BUG from the source

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26844 0785d39b-7218-0410-832d-ea1e28bc413d

Remove workarounds for DEAL_II_NESTED_CLASS_FRIEND_BUG from the source

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26843 0785d39b-7218-0410-832d-ea1e28bc413d

Remove workarounds for DEAL_II_NAMESP_TEMPL_FRIEND_BUG from the source

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26842 0785d39b-7218-0410-832d-ea1e28bc413d

Remove old bug tests for gcc versions <= 3.4

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26841 0785d39b-7218-0410-832d-ea1e28bc413d

Prefer getpid() over a direct syscall. Was there a reason for this?

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26840 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete checks

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26839 0785d39b-7218-0410-832d-ea1e28bc413d

Add the last bunch of system checks

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26838 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete workaround (we bundle with a boost library that will
unconditionally include iosfwd, say..., 100 times.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26837 0785d39b-7218-0410-832d-ea1e28bc413d

Reorganization of langauge and system checks

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26836 0785d39b-7218-0410-832d-ea1e28bc413d

Update README

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26835 0785d39b-7218-0410-832d-ea1e28bc413d

Fix the way we let the normalize.pl script know about where the deal.II directory is.

git-svn-id: https://svn.dealii.org/trunk@26834 0785d39b-7218-0410-832d-ea1e28bc413d

Disable std=c++11 for now (until I've figured out why it is exploding...)

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26833 0785d39b-7218-0410-832d-ea1e28bc413d

No comment...

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26832 0785d39b-7218-0410-832d-ea1e28bc413d

Remove direct "support" for BLAS.

We don't use blas directly. So remove the dangling config.h.in defines and
macros in ./include/base/*

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26831 0785d39b-7218-0410-832d-ea1e28bc413d

And the very first bugfix after the changes

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26830 0785d39b-7218-0410-832d-ea1e28bc413d

And finally remove configure_blas.cmake

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26829 0785d39b-7218-0410-832d-ea1e28bc413d

Update UMFPACK as well. Prettify the rest

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26828 0785d39b-7218-0410-832d-ea1e28bc413d

configure_arpack.cmake and FindARPACK.cmake done

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26827 0785d39b-7218-0410-832d-ea1e28bc413d

Reorganization of configure_ scripts #1

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26826 0785d39b-7218-0410-832d-ea1e28bc413d

Update the documentation

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26825 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26824 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup: Use PUSH_TEST_FLAG() and POP_TEST_FLAG where appropriate

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26823 0785d39b-7218-0410-832d-ea1e28bc413d

...

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26822 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26821 0785d39b-7218-0410-832d-ea1e28bc413d

Find the path to deal.II some other way.

git-svn-id: https://svn.dealii.org/trunk@26818 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@26817 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a merge conflict.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26816 0785d39b-7218-0410-832d-ea1e28bc413d

Make sure the compiler actually warns.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26815 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a Makefile that has been superseded by the cmake build system.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26814 0785d39b-7218-0410-832d-ea1e28bc413d

Remove stuff no longer necessary (and that has been deleted from mainline already).

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26813 0785d39b-7218-0410-832d-ea1e28bc413d

Remove this file. I've put it on the google code wiki.

git-svn-id: https://svn.dealii.org/trunk@26812 0785d39b-7218-0410-832d-ea1e28bc413d

Remove now deleted files from the list of things where stuff has to be substitutes.

git-svn-id: https://svn.dealii.org/trunk@26811 0785d39b-7218-0410-832d-ea1e28bc413d

nicer error message when refining an empty Triangulation

git-svn-id: https://svn.dealii.org/trunk@26810 0785d39b-7218-0410-832d-ea1e28bc413d

Fix the dependencies in this way for now

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26809 0785d39b-7218-0410-832d-ea1e28bc413d

Update the TODO list

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26808 0785d39b-7218-0410-832d-ea1e28bc413d

Reenable UMFPACK support after fixing some compile bugs.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26807 0785d39b-7218-0410-832d-ea1e28bc413d

My first cmake patch: Determine whether the compiler understands the __attribute__((deprecated)) syntax and if so use it.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26806 0785d39b-7218-0410-832d-ea1e28bc413d

Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26805 0785d39b-7218-0410-832d-ea1e28bc413d

fix benchmark script loop

git-svn-id: https://svn.dealii.org/trunk@26804 0785d39b-7218-0410-832d-ea1e28bc413d

add Assert for make_periodicity_constraints for a distributed Triangulation

git-svn-id: https://svn.dealii.org/trunk@26803 0785d39b-7218-0410-832d-ea1e28bc413d

fix typo in comment

git-svn-id: https://svn.dealii.org/trunk@26802 0785d39b-7218-0410-832d-ea1e28bc413d

improve documentation for make_periodicity_constraints

git-svn-id: https://svn.dealii.org/trunk@26801 0785d39b-7218-0410-832d-ea1e28bc413d

Remove from here since it has moved to the homepage/RELEASE directory.

git-svn-id: https://svn.dealii.org/trunk@26800 0785d39b-7218-0410-832d-ea1e28bc413d

Set properties.

git-svn-id: https://svn.dealii.org/trunk@26798 0785d39b-7218-0410-832d-ea1e28bc413d

Set properties.

git-svn-id: https://svn.dealii.org/trunk@26797 0785d39b-7218-0410-832d-ea1e28bc413d

Fix indentation.

git-svn-id: https://svn.dealii.org/trunk@26796 0785d39b-7218-0410-832d-ea1e28bc413d

Only output a list of parameters if there are any. Otherwise we
end up with an empty {itemize} list which latex does not like.

git-svn-id: https://svn.dealii.org/trunk@26795 0785d39b-7218-0410-832d-ea1e28bc413d

Move the 'normalize' and 'status_to_report' scripts to the tests directory.

git-svn-id: https://svn.dealii.org/trunk@26794 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a bunch of malformed indentations to make merging from mainline less painful.

git-svn-id: https://svn.dealii.org/trunk@26793 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a subdirectory that only contains tools we never seem to
use.

git-svn-id: https://svn.dealii.org/trunk@26792 0785d39b-7218-0410-832d-ea1e28bc413d

Convert several tutorial programs to the ComponentMask approach.

git-svn-id: https://svn.dealii.org/trunk@26791 0785d39b-7218-0410-832d-ea1e28bc413d

Fix one place where the syntax has to be adjusted to the new ComponentMask class.

git-svn-id: https://svn.dealii.org/trunk@26790 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a script that generates a TODO file. doxygen does this in a more elegant way, as does Eclipse. It's also easy to do with a grep command.

git-svn-id: https://svn.dealii.org/trunk@26789 0785d39b-7218-0410-832d-ea1e28bc413d

Remove more old stuff.

git-svn-id: https://svn.dealii.org/trunk@26788 0785d39b-7218-0410-832d-ea1e28bc413d

Remove scripts that haven't been used in a long time.

git-svn-id: https://svn.dealii.org/trunk@26787 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a script that nobody seems to recall what exactly it does.

git-svn-id: https://svn.dealii.org/trunk@26786 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a script that hasn't been useful since we switched to svn :-)

git-svn-id: https://svn.dealii.org/trunk@26785 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Remove code that doesn't belong there

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26784 0785d39b-7218-0410-832d-ea1e28bc413d

Code cleanup

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26783 0785d39b-7218-0410-832d-ea1e28bc413d

Add a 'bugfix'

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26782 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_cmake@26781 0785d39b-7218-0410-832d-ea1e28bc413d