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https://gitweb.dealii.org/ - dealii-svn.git/log
heister [Fri, 15 Feb 2013 05:23:40 +0000 (05:23 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@28403
0785d39b -7218-0410-832d-
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heister [Fri, 15 Feb 2013 05:19:15 +0000 (05:19 +0000)]
repair test and no longer call update_ghost_values()
git-svn-id: https://svn.dealii.org/trunk@28402
0785d39b -7218-0410-832d-
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heister [Fri, 15 Feb 2013 05:17:47 +0000 (05:17 +0000)]
add test to check assignment between ghosted vectors
git-svn-id: https://svn.dealii.org/trunk@28401
0785d39b -7218-0410-832d-
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heister [Fri, 15 Feb 2013 05:10:00 +0000 (05:10 +0000)]
operator= automatically calls update_ghost_values() in PETSc.
git-svn-id: https://svn.dealii.org/trunk@28400
0785d39b -7218-0410-832d-
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heister [Fri, 15 Feb 2013 05:08:26 +0000 (05:08 +0000)]
for regression tests: if abort() is disabled in assert(), throw the exception instead of ignoring it. This allows us to properly test for failing conditions. This commit will break a couple of tests that need to be adapted by hand.
git-svn-id: https://svn.dealii.org/trunk@28399
0785d39b -7218-0410-832d-
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bangerth [Thu, 14 Feb 2013 20:41:17 +0000 (20:41 +0000)]
In 1d, VectorTools::interpolate_boundary_values still assumed the old scheme where we have only zero boundary indicator on the left and one on the right. Fix this.
git-svn-id: https://svn.dealii.org/trunk@28398
0785d39b -7218-0410-832d-
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frohne [Thu, 14 Feb 2013 00:51:40 +0000 (00:51 +0000)]
change of obstacle filename since it is a pbm format now
git-svn-id: https://svn.dealii.org/trunk@28397
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 21:17:01 +0000 (21:17 +0000)]
benchmark: baseline plot
git-svn-id: https://svn.dealii.org/trunk@28395
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 21:16:08 +0000 (21:16 +0000)]
benchmark: baseline plot
git-svn-id: https://svn.dealii.org/trunk@28394
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 21:12:29 +0000 (21:12 +0000)]
improve benchmark scripts
git-svn-id: https://svn.dealii.org/trunk@28393
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 20:54:06 +0000 (20:54 +0000)]
fix stupid test
git-svn-id: https://svn.dealii.org/trunk@28392
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 19:04:33 +0000 (19:04 +0000)]
Add missing compress() implementations. Oops.
git-svn-id: https://svn.dealii.org/trunk@28391
0785d39b -7218-0410-832d-
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frohne [Wed, 13 Feb 2013 18:16:39 +0000 (18:16 +0000)]
comments for the class Input
git-svn-id: https://svn.dealii.org/trunk@28389
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 16:13:13 +0000 (16:13 +0000)]
step-49: tooltip
git-svn-id: https://svn.dealii.org/trunk@28387
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 16:08:22 +0000 (16:08 +0000)]
restructure step-49 headers
git-svn-id: https://svn.dealii.org/trunk@28386
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 16:04:21 +0000 (16:04 +0000)]
step-49: update kind
git-svn-id: https://svn.dealii.org/trunk@28385
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:50:58 +0000 (15:50 +0000)]
avoid deprecated warnings
git-svn-id: https://svn.dealii.org/trunk@28384
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:49:04 +0000 (15:49 +0000)]
correct warning messages
git-svn-id: https://svn.dealii.org/trunk@28383
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:36:49 +0000 (15:36 +0000)]
fix compilation (introduced in r28338)
git-svn-id: https://svn.dealii.org/trunk@28382
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:35:47 +0000 (15:35 +0000)]
clean up more compress() calls
git-svn-id: https://svn.dealii.org/trunk@28381
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:35:05 +0000 (15:35 +0000)]
do not simply compress() before an assignment, but fail instead.
git-svn-id: https://svn.dealii.org/trunk@28380
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:30:16 +0000 (15:30 +0000)]
make compress() without arguments deprecated for vectors.
git-svn-id: https://svn.dealii.org/trunk@28379
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:26:53 +0000 (15:26 +0000)]
Always use compress() with an argument, remove unneccesary compress() calls in algorithms, do not call update_ghost_values() inside algorithms.
git-svn-id: https://svn.dealii.org/trunk@28378
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:22:32 +0000 (15:22 +0000)]
avoid some deprecated warnings
git-svn-id: https://svn.dealii.org/trunk@28377
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:19:38 +0000 (15:19 +0000)]
avoid deprecated functions/headers in steps
git-svn-id: https://svn.dealii.org/trunk@28376
0785d39b -7218-0410-832d-
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heister [Wed, 13 Feb 2013 15:18:55 +0000 (15:18 +0000)]
do not name the class in step-50 step16
git-svn-id: https://svn.dealii.org/trunk@28375
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 15:05:03 +0000 (15:05 +0000)]
Fix syntax: if we access something with X::template member<T> then the
'template' keyword is only necessary if X is a class. This is no longer the
case for X=GridTools.
git-svn-id: https://svn.dealii.org/trunk@28374
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:45:49 +0000 (14:45 +0000)]
Make the test more interesting by testing more of the parameters.
git-svn-id: https://svn.dealii.org/trunk@28373
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:44:21 +0000 (14:44 +0000)]
Fix this bug two more times.
git-svn-id: https://svn.dealii.org/trunk@28372
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:43:02 +0000 (14:43 +0000)]
Fix syntax: if we access something with X::template member<T> then the
'template' keyword is only necessary if X is a class. This is no longer the
case for X=DoFTools.
git-svn-id: https://svn.dealii.org/trunk@28371
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:27:47 +0000 (14:27 +0000)]
Fix the same bug a third time.
git-svn-id: https://svn.dealii.org/trunk@28370
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:16:17 +0000 (14:16 +0000)]
Fix the same bug a second time in a different place.
git-svn-id: https://svn.dealii.org/trunk@28369
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:05:26 +0000 (14:05 +0000)]
Fix some confusion from yesterday. Not a bug here because matrices have to be
square, but still harder to read than necessary.
git-svn-id: https://svn.dealii.org/trunk@28368
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:01:34 +0000 (14:01 +0000)]
Fix a bug introduced yesterday.
git-svn-id: https://svn.dealii.org/trunk@28367
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 14:00:22 +0000 (14:00 +0000)]
Fix warning number.
git-svn-id: https://svn.dealii.org/trunk@28366
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 13:57:07 +0000 (13:57 +0000)]
Suppress more warnings with the PGI compiler.
git-svn-id: https://svn.dealii.org/trunk@28365
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 13:53:41 +0000 (13:53 +0000)]
Avoid more deprecated function.
git-svn-id: https://svn.dealii.org/trunk@28364
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 13:53:11 +0000 (13:53 +0000)]
Avoid deprecated function.
git-svn-id: https://svn.dealii.org/trunk@28363
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 13:52:10 +0000 (13:52 +0000)]
Avoid deprecated function.
git-svn-id: https://svn.dealii.org/trunk@28362
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 13:48:48 +0000 (13:48 +0000)]
Fix a thinko that won't work for rectangular matrices.
git-svn-id: https://svn.dealii.org/trunk@28361
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 13:46:51 +0000 (13:46 +0000)]
Avoid deprecated function.
git-svn-id: https://svn.dealii.org/trunk@28360
0785d39b -7218-0410-832d-
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frohne [Wed, 13 Feb 2013 07:00:40 +0000 (07:00 +0000)]
improve of Input class
git-svn-id: https://svn.dealii.org/trunk@28357
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 04:09:23 +0000 (04:09 +0000)]
Disambiguate a call.
git-svn-id: https://svn.dealii.org/trunk@28356
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 03:31:46 +0000 (03:31 +0000)]
Avoid a warning with some compilers.
git-svn-id: https://svn.dealii.org/trunk@28355
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 01:44:41 +0000 (01:44 +0000)]
Disable one more ICC warning.
git-svn-id: https://svn.dealii.org/trunk@28354
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 01:04:37 +0000 (01:04 +0000)]
Comment update.
git-svn-id: https://svn.dealii.org/trunk@28353
0785d39b -7218-0410-832d-
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bangerth [Wed, 13 Feb 2013 00:59:12 +0000 (00:59 +0000)]
Avoid a warning by icc.
git-svn-id: https://svn.dealii.org/trunk@28352
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 23:23:18 +0000 (23:23 +0000)]
remove calls to compress() without arguments from all deal steps, add missing calls to compress, use simpler distribute_local_to_global calls
git-svn-id: https://svn.dealii.org/trunk@28351
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 23:00:15 +0000 (23:00 +0000)]
step-42: remove unnecessary compress() calls
git-svn-id: https://svn.dealii.org/trunk@28350
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 22:25:24 +0000 (22:25 +0000)]
step-42: better compress call
git-svn-id: https://svn.dealii.org/trunk@28349
0785d39b -7218-0410-832d-
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frohne [Tue, 12 Feb 2013 22:24:32 +0000 (22:24 +0000)]
add some more compress() calls
git-svn-id: https://svn.dealii.org/trunk@28348
0785d39b -7218-0410-832d-
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frohne [Tue, 12 Feb 2013 22:04:18 +0000 (22:04 +0000)]
add a compress() call for system_rhs_system
git-svn-id: https://svn.dealii.org/trunk@28347
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 21:21:53 +0000 (21:21 +0000)]
Fix the last place where we were using deprecated functions.
git-svn-id: https://svn.dealii.org/trunk@28346
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 21:19:45 +0000 (21:19 +0000)]
Work around a bug in Intel ICC 10.1. This also significantly cleans up the code.
git-svn-id: https://svn.dealii.org/trunk@28345
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 21:12:01 +0000 (21:12 +0000)]
Avoid one set of uses of deprecated functions.
git-svn-id: https://svn.dealii.org/trunk@28344
0785d39b -7218-0410-832d-
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frohne [Tue, 12 Feb 2013 21:08:22 +0000 (21:08 +0000)]
fix memory overwrite in step-42
git-svn-id: https://svn.dealii.org/trunk@28343
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 21:07:21 +0000 (21:07 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/trunk@28342
0785d39b -7218-0410-832d-
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frohne [Tue, 12 Feb 2013 20:41:15 +0000 (20:41 +0000)]
changing the obstacle that avoid the Input class
git-svn-id: https://svn.dealii.org/trunk@28341
0785d39b -7218-0410-832d-
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frohne [Tue, 12 Feb 2013 20:33:36 +0000 (20:33 +0000)]
data for the chinese symbol to describe the obstacle
git-svn-id: https://svn.dealii.org/trunk@28340
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 20:19:23 +0000 (20:19 +0000)]
update plot and sync script
git-svn-id: https://svn.dealii.org/trunk@28339
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 20:12:13 +0000 (20:12 +0000)]
rename dof_indices() function to get_active_or_mg_dof_indices() and document a couple of functions
git-svn-id: https://svn.dealii.org/trunk@28338
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 20:11:02 +0000 (20:11 +0000)]
work on step-49 docu
git-svn-id: https://svn.dealii.org/trunk@28337
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 20:10:25 +0000 (20:10 +0000)]
Use the variable row instead of p->row() because we know what it is.
git-svn-id: https://svn.dealii.org/trunk@28336
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 20:02:15 +0000 (20:02 +0000)]
Fix thinko.
git-svn-id: https://svn.dealii.org/trunk@28335
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 17:26:44 +0000 (17:26 +0000)]
update step-49 gmsh script
git-svn-id: https://svn.dealii.org/trunk@28334
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 17:03:38 +0000 (17:03 +0000)]
Follow the documented advice of not looping over all elements of a matrix but do so row by row.
git-svn-id: https://svn.dealii.org/trunk@28333
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 17:03:23 +0000 (17:03 +0000)]
Follow the documented advice of not looping over all elements of a matrix but do so row by row.
git-svn-id: https://svn.dealii.org/trunk@28332
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 17:00:45 +0000 (17:00 +0000)]
update citation
git-svn-id: https://svn.dealii.org/trunk@28331
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 16:09:54 +0000 (16:09 +0000)]
Follow the documented advice of not looping over all elements of a matrix but do so row by row.
git-svn-id: https://svn.dealii.org/trunk@28330
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 15:37:29 +0000 (15:37 +0000)]
mark FEValues update flag as deprecated that has no use
git-svn-id: https://svn.dealii.org/trunk@28329
0785d39b -7218-0410-832d-
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heister [Tue, 12 Feb 2013 15:36:57 +0000 (15:36 +0000)]
remove TODO that is no longer up to date
git-svn-id: https://svn.dealii.org/trunk@28328
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 15:22:32 +0000 (15:22 +0000)]
Improve file layout.
git-svn-id: https://svn.dealii.org/trunk@28326
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 15:20:15 +0000 (15:20 +0000)]
Follow the documented advice of not looping over all elements of a matrix but do so row by row.
git-svn-id: https://svn.dealii.org/trunk@28325
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 15:19:50 +0000 (15:19 +0000)]
Use an unsigned int iterator variable.
git-svn-id: https://svn.dealii.org/trunk@28324
0785d39b -7218-0410-832d-
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bangerth [Tue, 12 Feb 2013 15:14:35 +0000 (15:14 +0000)]
Follow the documented advice of not looping over all elements of a matrix but do so row by row.
git-svn-id: https://svn.dealii.org/trunk@28323
0785d39b -7218-0410-832d-
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kronbichler [Tue, 12 Feb 2013 10:40:51 +0000 (10:40 +0000)]
Fix some more deprecation warnings.
git-svn-id: https://svn.dealii.org/trunk@28322
0785d39b -7218-0410-832d-
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kronbichler [Tue, 12 Feb 2013 10:24:15 +0000 (10:24 +0000)]
Mention the improved iterators.
git-svn-id: https://svn.dealii.org/trunk@28321
0785d39b -7218-0410-832d-
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kronbichler [Tue, 12 Feb 2013 10:00:34 +0000 (10:00 +0000)]
Fix one more warning.
git-svn-id: https://svn.dealii.org/trunk@28320
0785d39b -7218-0410-832d-
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kronbichler [Tue, 12 Feb 2013 09:48:24 +0000 (09:48 +0000)]
Mark old constructors of iterators as deprecated. Remove private nth_entry_in_row function as it is not used any more.
git-svn-id: https://svn.dealii.org/trunk@28319
0785d39b -7218-0410-832d-
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kronbichler [Tue, 12 Feb 2013 09:44:10 +0000 (09:44 +0000)]
Fix warnings (deprecated functions, unused variables.
git-svn-id: https://svn.dealii.org/trunk@28318
0785d39b -7218-0410-832d-
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kronbichler [Tue, 12 Feb 2013 09:10:05 +0000 (09:10 +0000)]
Avoid warnings.
git-svn-id: https://svn.dealii.org/trunk@28317
0785d39b -7218-0410-832d-
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frohne [Mon, 11 Feb 2013 22:35:09 +0000 (22:35 +0000)]
add a more detailed description of the chinese, japanese or korean symbol for force
git-svn-id: https://svn.dealii.org/trunk@28316
0785d39b -7218-0410-832d-
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bangerth [Mon, 11 Feb 2013 20:14:12 +0000 (20:14 +0000)]
Rename a variable. Add documentation.
git-svn-id: https://svn.dealii.org/trunk@28315
0785d39b -7218-0410-832d-
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frohne [Mon, 11 Feb 2013 18:18:45 +0000 (18:18 +0000)]
add a section adaptive mesh refinement and in implementation a passage for the Input class
git-svn-id: https://svn.dealii.org/trunk@28314
0785d39b -7218-0410-832d-
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frohne [Mon, 11 Feb 2013 18:18:26 +0000 (18:18 +0000)]
add a section adaptive mesh refinement and in implementation a passage for the Input class
git-svn-id: https://svn.dealii.org/trunk@28313
0785d39b -7218-0410-832d-
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frohne [Mon, 11 Feb 2013 17:35:29 +0000 (17:35 +0000)]
reorganize the runtime output for the shell
git-svn-id: https://svn.dealii.org/trunk@28312
0785d39b -7218-0410-832d-
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bangerth [Mon, 11 Feb 2013 17:29:06 +0000 (17:29 +0000)]
On cygwin, do not build the library in a local directory first but right in place.
git-svn-id: https://svn.dealii.org/trunk@28311
0785d39b -7218-0410-832d-
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bangerth [Sun, 10 Feb 2013 05:31:39 +0000 (05:31 +0000)]
Fix one more test.
git-svn-id: https://svn.dealii.org/trunk@28306
0785d39b -7218-0410-832d-
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bangerth [Sun, 10 Feb 2013 05:02:06 +0000 (05:02 +0000)]
Update a test that now produces different output since the change that makes SparsityPattern *always* store diagonal elements.
git-svn-id: https://svn.dealii.org/trunk@28305
0785d39b -7218-0410-832d-
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bangerth [Sun, 10 Feb 2013 04:59:37 +0000 (04:59 +0000)]
Update.
git-svn-id: https://svn.dealii.org/trunk@28304
0785d39b -7218-0410-832d-
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bangerth [Sun, 10 Feb 2013 04:57:00 +0000 (04:57 +0000)]
One more test.
git-svn-id: https://svn.dealii.org/trunk@28303
0785d39b -7218-0410-832d-
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bangerth [Sun, 10 Feb 2013 04:53:20 +0000 (04:53 +0000)]
Update for new SparsityPattern storage scheme.
git-svn-id: https://svn.dealii.org/trunk@28302
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bangerth [Sun, 10 Feb 2013 04:50:33 +0000 (04:50 +0000)]
Remove test that is now no longer relevant.
git-svn-id: https://svn.dealii.org/trunk@28301
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bangerth [Sat, 9 Feb 2013 22:09:14 +0000 (22:09 +0000)]
Adjust to the changes in SparsityPattern.
git-svn-id: https://svn.dealii.org/trunk@28299
0785d39b -7218-0410-832d-
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bangerth [Sat, 9 Feb 2013 22:07:20 +0000 (22:07 +0000)]
Fix a thinko.
git-svn-id: https://svn.dealii.org/trunk@28298
0785d39b -7218-0410-832d-
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bangerth [Sat, 9 Feb 2013 21:50:29 +0000 (21:50 +0000)]
Avoid a bug with the newly introduced general use of always storing the
diagonal of a square matrix.
git-svn-id: https://svn.dealii.org/trunk@28297
0785d39b -7218-0410-832d-
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frohne [Sat, 9 Feb 2013 20:46:27 +0000 (20:46 +0000)]
implement a new class Input to read in data for an obstacle like the Chinese symbol for force
git-svn-id: https://svn.dealii.org/trunk@28296
0785d39b -7218-0410-832d-
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bangerth [Sat, 9 Feb 2013 05:15:09 +0000 (05:15 +0000)]
Push the now generally true assumption that sparsity pattern for square matrices *always* store the diagonal element first in each row, into the ChunkSparsityPattern as well.
git-svn-id: https://svn.dealii.org/trunk@28293
0785d39b -7218-0410-832d-
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bangerth [Sat, 9 Feb 2013 05:14:23 +0000 (05:14 +0000)]
Remove an assertio that now no longer has meaning.
git-svn-id: https://svn.dealii.org/trunk@28292
0785d39b -7218-0410-832d-
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bangerth [Sat, 9 Feb 2013 04:59:50 +0000 (04:59 +0000)]
Fix type of a counting index.
git-svn-id: https://svn.dealii.org/trunk@28291
0785d39b -7218-0410-832d-
ea1e28bc413d
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