]>
https://gitweb.dealii.org/ - dealii.git/log
Timo Heister [Mon, 8 Feb 2016 14:20:18 +0000 (09:20 -0500)]
fix several scary MPI bugs
I am surprised the code in question used to work at all because we are just
overwriting random memory. I detected those using clang's argument type
warnings and extensible clang type annotation within MPICH.
Martin Kronbichler [Mon, 8 Feb 2016 13:26:40 +0000 (14:26 +0100)]
Merge pull request #2147 from kronbichler/master
Avoid C++11-isms in tests
Martin Kronbichler [Mon, 8 Feb 2016 10:37:01 +0000 (11:37 +0100)]
Avoid C++11-isms in tests
David Wells [Sun, 7 Feb 2016 17:38:48 +0000 (12:38 -0500)]
Merge pull request #2146 from tjhei/minor_doc_update
minor rewording
Timo Heister [Sun, 7 Feb 2016 14:37:36 +0000 (09:37 -0500)]
minor rewording
Matthias Maier [Sun, 7 Feb 2016 02:12:30 +0000 (20:12 -0600)]
Merge pull request #2145 from tjhei/update_copyright_years
update copyright years
Matthias Maier [Sun, 7 Feb 2016 02:06:29 +0000 (20:06 -0600)]
Merge pull request #2143 from tjhei/documentation_updates
Documentation updates
Timo Heister [Sun, 7 Feb 2016 01:42:28 +0000 (20:42 -0500)]
update copyright years
Timo Heister [Sun, 7 Feb 2016 01:33:22 +0000 (20:33 -0500)]
fix astyle
Timo Heister [Sun, 7 Feb 2016 00:47:56 +0000 (19:47 -0500)]
wrapcomments.py: numbered list support
Timo Heister [Sun, 7 Feb 2016 00:21:36 +0000 (19:21 -0500)]
update update_copyright script
-i is only valid if you process a file
Timo Heister [Sat, 6 Feb 2016 23:59:42 +0000 (18:59 -0500)]
fix block formulas
Timo Heister [Sat, 6 Feb 2016 23:48:03 +0000 (18:48 -0500)]
doxygen doesn't like numbered lists
Timo Heister [Sat, 6 Feb 2016 23:47:33 +0000 (18:47 -0500)]
more manual formatting
Timo Heister [Sat, 6 Feb 2016 23:33:21 +0000 (18:33 -0500)]
improve wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 22:40:54 +0000 (17:40 -0500)]
manual formatting fixes for wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 22:19:54 +0000 (17:19 -0500)]
formatting: release step 0b
Timo Heister [Sat, 6 Feb 2016 21:49:01 +0000 (16:49 -0500)]
various documentation fixes
Wolfgang Bangerth [Sat, 6 Feb 2016 03:03:51 +0000 (21:03 -0600)]
Merge pull request #2142 from tjhei/msvc_bigobj_fix
fix MSVC compilation by adding /bigobj
Timo Heister [Sat, 6 Feb 2016 02:46:38 +0000 (21:46 -0500)]
fix MSVC compilation by adding /bigobj
this fixes "fatal error C1128: number of sections exceeded object file format limit"
Wolfgang Bangerth [Fri, 5 Feb 2016 18:21:45 +0000 (12:21 -0600)]
Merge pull request #2100 from drwells/remove-whitespace-in-get_fe_by_name
Remove whitespace in get fe by name
Bruno Turcksin [Fri, 5 Feb 2016 16:57:02 +0000 (11:57 -0500)]
Merge pull request #2140 from tjhei/fix_tests2
fix tests without cxx11
Timo Heister [Fri, 5 Feb 2016 16:42:13 +0000 (11:42 -0500)]
fix tests without cxx11
Matthias Maier [Fri, 5 Feb 2016 15:25:30 +0000 (09:25 -0600)]
Merge pull request #2139 from tjhei/metis_test_output
fix metis tests
Timo Heister [Fri, 5 Feb 2016 14:53:41 +0000 (09:53 -0500)]
fix metis tests
On my machine with 64bit ints and 32bit metis I am getting the 32bit results
and so the tests fail. Fix this by always comparing against all possible
outputs. Also include additional output for metis_04.
Martin Kronbichler [Fri, 5 Feb 2016 14:49:47 +0000 (15:49 +0100)]
Merge pull request #2138 from tjhei/metis_user_include
add metis include dir to USER_INCLUDE_DIRS
Timo Heister [Fri, 5 Feb 2016 14:30:16 +0000 (09:30 -0500)]
add metis include dir to USER_INCLUDE_DIRS
otherwise tests/metis/metis_01a fails with "fatal error: 'metis.h' file not found"
Timo Heister [Fri, 5 Feb 2016 14:26:59 +0000 (09:26 -0500)]
Merge pull request #2137 from tjhei/fix_tests
fix several tests
Timo Heister [Fri, 5 Feb 2016 13:02:50 +0000 (08:02 -0500)]
fix several tests
David Wells [Fri, 5 Feb 2016 12:52:05 +0000 (07:52 -0500)]
Merge pull request #2136 from tjhei/fix__parallelepiped_test
fix tests/grid/grid_parallelepiped_05
Timo Heister [Fri, 5 Feb 2016 12:42:09 +0000 (07:42 -0500)]
fix tests/grid/grid_parallelepiped_05
Matthias Maier [Fri, 5 Feb 2016 04:11:32 +0000 (22:11 -0600)]
Merge pull request #2134 from tjhei/boost_blacklist2
Boost blacklist2
David Wells [Fri, 22 Jan 2016 18:16:41 +0000 (13:16 -0500)]
Add some spaces in the get_fe_by_name test.
David Wells [Fri, 22 Jan 2016 16:38:46 +0000 (11:38 -0500)]
Let FE names have spaces between words.
Previously, things like
FESystem[FE_Q(1) - FE_Q(2)]
caused parsing errors due to the spaces around the '-'. The new behavior is to
delete space that is not surrounded by 'word' characters (things that match the
regular expression [A-Za-z0-9_]) before parsing the name.
David Wells [Fri, 5 Feb 2016 03:30:34 +0000 (22:30 -0500)]
Merge pull request #2135 from tjhei/fix_compilation_grid_gen
fix compilation errors
Timo Heister [Fri, 5 Feb 2016 03:20:12 +0000 (22:20 -0500)]
fix compilation errors
gcc and intel rightfully want the template parameters spelled out.
Timo Heister [Fri, 5 Feb 2016 00:04:14 +0000 (19:04 -0500)]
also remove Boost_DIR
Timo Heister [Fri, 5 Feb 2016 00:00:23 +0000 (19:00 -0500)]
use correct version variables
Timo Heister [Fri, 5 Feb 2016 00:00:05 +0000 (19:00 -0500)]
cleanup boost variables
Matthias Maier [Thu, 4 Feb 2016 23:48:52 +0000 (17:48 -0600)]
Merge pull request #2132 from tjhei/boost_blacklist
blacklist boost version 1.58
Timo Heister [Thu, 4 Feb 2016 23:44:50 +0000 (18:44 -0500)]
move check to configure_boost
Wolfgang Bangerth [Thu, 4 Feb 2016 23:24:22 +0000 (17:24 -0600)]
Merge pull request #1936 from tjhei/hyper_rectangle_codim_fixes
fix *_hyper_rectangle for codim and add new subdivided_parallelepiped
Wolfgang Bangerth [Thu, 4 Feb 2016 23:23:33 +0000 (17:23 -0600)]
Merge pull request #2133 from tjhei/test_empty_results
handle empty test output
Timo Heister [Thu, 4 Feb 2016 23:17:49 +0000 (18:17 -0500)]
handle empty test output
If the make command to compile a test returns empty output (don't ask me
why that happened on my machine), quote it in the regex to avoid an
error like:
"string sub-command REGEX, mode MATCH needs at least 5 arguments"
Timo Heister [Thu, 4 Feb 2016 19:43:18 +0000 (14:43 -0500)]
changelog
Timo Heister [Wed, 2 Dec 2015 19:53:47 +0000 (14:53 -0500)]
fix *_hyper_rectangle for codim and add new subdivided_parallelepiped
- extend documentation what happens if dim!=spacedim
- add new subdivided_parallelepiped for codim1 and 2
- switch to Point<dim> in *_hyper_rectangle
Timo Heister [Thu, 4 Feb 2016 22:40:59 +0000 (17:40 -0500)]
blacklist boost version 1.58
addresses #1591
Timo Heister [Thu, 4 Feb 2016 15:39:56 +0000 (10:39 -0500)]
Merge pull request #1934 from Arezou-gh/local-triangulations
Add GridTools::build_triangulation_from_patch() and GridTools::get_cells_at_coarsest_common_level().
Arezou Ghesmati [Thu, 4 Feb 2016 01:04:21 +0000 (19:04 -0600)]
Add modified tests for build_triangulation_from_patch()
Timo Heister [Tue, 2 Feb 2016 20:56:02 +0000 (15:56 -0500)]
Merge pull request #2129 from kronbichler/master
Fix bug in matrix multiplication
Martin Kronbichler [Tue, 2 Feb 2016 19:20:48 +0000 (20:20 +0100)]
Fix bug in matrix multiplication
Wolfgang Bangerth [Mon, 1 Feb 2016 20:18:49 +0000 (14:18 -0600)]
Merge pull request #2127 from pesser/fix_warning
avoid warning about unused variable
Patrick Esser [Mon, 1 Feb 2016 19:42:22 +0000 (20:42 +0100)]
avoid warning about unused variable
According to the documentation of ArpackSolver::solve the first parameter is
unused. Do not give it a name in the definition to avoid unused variable
warnings.
Denis Davydov [Mon, 1 Feb 2016 13:56:48 +0000 (14:56 +0100)]
Merge pull request #2126 from davydden/compute_line_dof_identities_assert
remove invalid assert in compute_line_dof_identities() related to eleā¦
Denis Davydov [Mon, 1 Feb 2016 10:26:01 +0000 (11:26 +0100)]
remove invalid assert in compute_line_dof_identities() related to element domination; add a unit test
Wolfgang Bangerth [Sat, 30 Jan 2016 03:06:08 +0000 (21:06 -0600)]
Merge pull request #2125 from tjhei/msvc_fix
fix msvc compilation
Timo Heister [Sat, 30 Jan 2016 02:44:28 +0000 (21:44 -0500)]
fix msvc compilation
Luca Heltai [Fri, 29 Jan 2016 09:59:53 +0000 (10:59 +0100)]
Merge pull request #2121 from sebastianGl31415/master
modified step-34 tutorial introduction
Luca Heltai [Fri, 29 Jan 2016 09:57:38 +0000 (10:57 +0100)]
Merge pull request #2101 from drwells/continuation-line-whitespace
Skip whitespace at the start of continuing lines.
Timo Heister [Thu, 28 Jan 2016 22:34:05 +0000 (23:34 +0100)]
Merge pull request #2122 from bangerth/fix-64bit-output
Adjust the output of two tests for 64-bit runs.
sebastianGl31415 [Thu, 28 Jan 2016 16:42:23 +0000 (17:42 +0100)]
Update intro.dox
I fixed language mistakes.
Wolfgang Bangerth [Thu, 28 Jan 2016 15:25:51 +0000 (09:25 -0600)]
Merge pull request #2116 from kronbichler/master
Fix 2:1 balance on artificial cells over periodic boundaries.
Martin Kronbichler [Thu, 28 Jan 2016 14:26:31 +0000 (15:26 +0100)]
Choose better names for tests
Martin Kronbichler [Thu, 28 Jan 2016 14:09:21 +0000 (15:09 +0100)]
Use GeometryInfo to fix non-standard orientation case
David Wells [Thu, 28 Jan 2016 13:47:26 +0000 (08:47 -0500)]
Update a changelog entry.
David Wells [Thu, 28 Jan 2016 13:44:48 +0000 (08:44 -0500)]
Allow parameter files to end with a '\'.
Wolfgang Bangerth [Thu, 28 Jan 2016 13:35:27 +0000 (07:35 -0600)]
Adjust the output of two tests for 64-bit runs.
Ludwig Sebastian Glane [Thu, 28 Jan 2016 11:46:42 +0000 (11:46 +0000)]
modified step-34 tutorial introduction
Martin Kronbichler [Wed, 27 Jan 2016 17:47:11 +0000 (18:47 +0100)]
Test beauty
Martin Kronbichler [Wed, 27 Jan 2016 17:41:26 +0000 (18:41 +0100)]
Add changelog entry
Martin Kronbichler [Wed, 27 Jan 2016 17:41:16 +0000 (18:41 +0100)]
Overload perpare_coarsening_and_refinement for the periodic case
Martin Kronbichler [Wed, 27 Jan 2016 16:39:05 +0000 (17:39 +0100)]
Add additional test with hanging nodes. Fix bug in identification of periodic vertices.
Martin Kronbichler [Tue, 26 Jan 2016 08:02:10 +0000 (09:02 +0100)]
Fix 2:1 balance on artificial cells over periodic boundaries.
Martin Kronbichler [Thu, 28 Jan 2016 08:04:42 +0000 (09:04 +0100)]
Merge pull request #2119 from fsonner/sparsevankafix
Fix local second-order coupling in SparseVanka
Florian Sonner [Wed, 27 Jan 2016 14:56:48 +0000 (15:56 +0100)]
Add SparseVanka fix message to changes.h
Wolfgang Bangerth [Tue, 26 Jan 2016 17:17:48 +0000 (11:17 -0600)]
Merge pull request #2120 from tjhei/petsc_matrix_err_msg
improve PETSc sparse_matrix constructor error msg
Timo Heister [Tue, 26 Jan 2016 14:03:53 +0000 (15:03 +0100)]
improve PETSc sparse_matrix constructor error msg
If you construct a PETSc sparse matrix with invalid IndexSets for local
rows/columns, you only get a cryptic PETSc error code. This commit adds
a check in debug mode with a helpful error message.
Florian Sonner [Tue, 26 Jan 2016 13:37:20 +0000 (14:37 +0100)]
Fix local second-order coupling in SparseVanka
Fixes issue #2118.
Wolfgang Bangerth [Tue, 26 Jan 2016 11:50:17 +0000 (05:50 -0600)]
Merge pull request #2117 from tjhei/metis_small
fix METIS partitioning with too many processors
Timo Heister [Tue, 26 Jan 2016 09:54:25 +0000 (10:54 +0100)]
changelog
Timo Heister [Tue, 26 Jan 2016 09:51:57 +0000 (10:51 +0100)]
fix the case where we reduce to 1 domain
Timo Heister [Tue, 26 Jan 2016 09:51:38 +0000 (10:51 +0100)]
fix metis partitioning with too many processors
If you have more processors than cells to partition, METIS will behave
in a weird and undesired way:
- at some point all subdomains land on a single processor
- METIS produces an error message "***Cannot bisect a graph with 0
vertices!"
Timo Heister [Tue, 26 Jan 2016 08:29:54 +0000 (09:29 +0100)]
add test
Wolfgang Bangerth [Mon, 25 Jan 2016 15:13:30 +0000 (09:13 -0600)]
Merge pull request #2113 from bangerth/further-FEValues-cleanups-40
Remove internal update_once/update_each functions
Wolfgang Bangerth [Mon, 25 Jan 2016 15:12:55 +0000 (09:12 -0600)]
Fix copyright year range.
Wolfgang Bangerth [Sun, 24 Jan 2016 20:03:36 +0000 (14:03 -0600)]
Slightly clarify a comment.
Wolfgang Bangerth [Sun, 24 Jan 2016 19:16:33 +0000 (13:16 -0600)]
Remove declarations of functions that are no longer implemented.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:23:34 +0000 (19:23 -0600)]
Remove an outdated comment.
Replace it with links to places where the comments are up to date.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:23:07 +0000 (19:23 -0600)]
Remove now no longer used FE_PolyTensor::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:22:45 +0000 (19:22 -0600)]
Remove now no longer used FE_Poly::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:05:36 +0000 (19:05 -0600)]
Remove now no longer used FE_PolyFace::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 00:54:54 +0000 (18:54 -0600)]
Remove now no longer used FE_FaceQ::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 00:54:29 +0000 (18:54 -0600)]
Remove now no longer used FE_DGP_Nonparametric::update_once/each.
Bruno Turcksin [Mon, 25 Jan 2016 13:26:36 +0000 (08:26 -0500)]
Merge pull request #2115 from bangerth/fix-doxygen-markup
Fix doxygen markup.
Bruno Turcksin [Mon, 25 Jan 2016 13:26:03 +0000 (08:26 -0500)]
Merge pull request #2112 from bangerth/further-FEValues-cleanups-38
Initialize the last non-const field of FiniteElementData from constructor arguments
Wolfgang Bangerth [Mon, 25 Jan 2016 04:13:43 +0000 (22:13 -0600)]
Fix doxygen markup.
doxygen generates unpleasantly looking markup if the text that goes with a
'@name' tag is spread over two lines. Fix this.
David Wells [Mon, 25 Jan 2016 03:29:11 +0000 (22:29 -0500)]
Add more authors to ParameterHandler.
David Wells [Mon, 25 Jan 2016 03:28:52 +0000 (22:28 -0500)]
Elaborate on the continuation line comment.
David Wells [Mon, 25 Jan 2016 02:44:30 +0000 (21:44 -0500)]
Document the line continuation tests.
David Wells [Mon, 25 Jan 2016 02:43:36 +0000 (21:43 -0500)]
Improve the style in parameter_handler.cc a bit.
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