https://gitweb.dealii.org/ - dealii-svn.git/log

bangerth [Sat, 1 Oct 2011 13:00:44 +0000 (13:00 +0000)]

Fall back to a list of Trilinos libs if we can't find the file in which it should be listed.

git-svn-id: https://svn.dealii.org/trunk@24498 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 1 Oct 2011 12:54:26 +0000 (12:54 +0000)]

Provide a reference.

git-svn-id: https://svn.dealii.org/trunk@24497 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 1 Oct 2011 12:53:16 +0000 (12:53 +0000)]

Update a reference to PETSc.

git-svn-id: https://svn.dealii.org/trunk@24496 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 1 Oct 2011 10:02:04 +0000 (10:02 +0000)]

document Trilinos bug

git-svn-id: https://svn.dealii.org/trunk@24495 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 1 Oct 2011 09:55:00 +0000 (09:55 +0000)]

improve documentation about Trilinos versions.

git-svn-id: https://svn.dealii.org/trunk@24494 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 23:42:50 +0000 (23:42 +0000)]

Fix invalid reference.

git-svn-id: https://svn.dealii.org/trunk@24493 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 23:31:29 +0000 (23:31 +0000)]

Fix formula error.

git-svn-id: https://svn.dealii.org/trunk@24492 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 30 Sep 2011 19:21:12 +0000 (19:21 +0000)]

Extend in-code comments.

git-svn-id: https://svn.dealii.org/trunk@24491 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 17:27:23 +0000 (17:27 +0000)]

Fix a couple of formulas.

git-svn-id: https://svn.dealii.org/trunk@24490 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 30 Sep 2011 15:39:35 +0000 (15:39 +0000)]

Detect TrilinosConfig.cmake file location.

git-svn-id: https://svn.dealii.org/trunk@24489 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 30 Sep 2011 15:36:33 +0000 (15:36 +0000)]

Write some more comments about the solvers.

git-svn-id: https://svn.dealii.org/trunk@24487 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 14:53:11 +0000 (14:53 +0000)]

Make it so that it compiles.

git-svn-id: https://svn.dealii.org/trunk@24486 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 14:47:16 +0000 (14:47 +0000)]

Continue writing documentation.

git-svn-id: https://svn.dealii.org/trunk@24485 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 14:37:45 +0000 (14:37 +0000)]

We don't actually use Epetra_Map by hand in this program.

git-svn-id: https://svn.dealii.org/trunk@24484 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 30 Sep 2011 13:34:05 +0000 (13:34 +0000)]

Fix a few typos. Continue documentation in step-32.

git-svn-id: https://svn.dealii.org/trunk@24483 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 12:50:49 +0000 (12:50 +0000)]

Trilinos 10.6.x has bugs that don't allow us to work with it. Error out when encountering these versions.

git-svn-id: https://svn.dealii.org/trunk@24482 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 30 Sep 2011 12:28:40 +0000 (12:28 +0000)]

Change the section on the artificial viscosity to what we use in the paper.

git-svn-id: https://svn.dealii.org/trunk@24481 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 11:03:12 +0000 (11:03 +0000)]

Update documentation in one place.

git-svn-id: https://svn.dealii.org/trunk@24480 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 30 Sep 2011 09:30:14 +0000 (09:30 +0000)]

Work around warning with Intel compiler.

git-svn-id: https://svn.dealii.org/trunk@24479 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 Sep 2011 00:03:46 +0000 (00:03 +0000)]

Go through more of the documentation.

git-svn-id: https://svn.dealii.org/trunk@24478 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 21:06:01 +0000 (21:06 +0000)]

Augment statement by class name.

git-svn-id: https://svn.dealii.org/trunk@24477 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 21:02:02 +0000 (21:02 +0000)]

Use Utilities::MPI::this_mpi_process instead of Utilities::System::get_this_mpi_process.

git-svn-id: https://svn.dealii.org/trunk@24476 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 21:00:10 +0000 (21:00 +0000)]

Use Utilities::MPI::this_mpi_process instead of Utilities::System::get_this_mpi_process.

git-svn-id: https://svn.dealii.org/trunk@24475 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 20:57:14 +0000 (20:57 +0000)]

Continue documenting.

git-svn-id: https://svn.dealii.org/trunk@24474 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 20:03:34 +0000 (20:03 +0000)]

Indent a bunch of variables.

git-svn-id: https://svn.dealii.org/trunk@24473 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 29 Sep 2011 15:49:38 +0000 (15:49 +0000)]

Update some comments. Try PreconditionJacobi instead of ILU/IC.

git-svn-id: https://svn.dealii.org/trunk@24470 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 15:49:30 +0000 (15:49 +0000)]

Remove long outdated n_threads parameter.

git-svn-id: https://svn.dealii.org/trunk@24469 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 15:44:06 +0000 (15:44 +0000)]

Make include paths future proof.

git-svn-id: https://svn.dealii.org/trunk@24468 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 15:42:10 +0000 (15:42 +0000)]

Make include path future proof.

git-svn-id: https://svn.dealii.org/trunk@24467 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 15:36:08 +0000 (15:36 +0000)]

Qualify with std:: where necessary.

git-svn-id: https://svn.dealii.org/trunk@24466 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 15:29:11 +0000 (15:29 +0000)]

Make include path future proof.

git-svn-id: https://svn.dealii.org/trunk@24465 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 29 Sep 2011 10:20:02 +0000 (10:20 +0000)]

Undo r24457 since without MPI those sections are neither initialized nor needed and hence unnecessary.

git-svn-id: https://svn.dealii.org/trunk@24463 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 29 Sep 2011 10:14:02 +0000 (10:14 +0000)]

Make compile.

git-svn-id: https://svn.dealii.org/trunk@24462 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 02:51:22 +0000 (02:51 +0000)]

Go on documenting significantly more.

git-svn-id: https://svn.dealii.org/trunk@24461 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Sep 2011 02:11:57 +0000 (02:11 +0000)]

Use the right vector's norm as a stopping criterion.

git-svn-id: https://svn.dealii.org/trunk@24460 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 28 Sep 2011 23:35:50 +0000 (23:35 +0000)]

Remove adiabatic quantities since they don't make any sense in the
current setting of an incompressible model. Rewrite the preconditioner
slightly (no functionality change). Write some more documentation.

git-svn-id: https://svn.dealii.org/trunk@24459 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 28 Sep 2011 23:05:21 +0000 (23:05 +0000)]

Make include path future proof.

git-svn-id: https://svn.dealii.org/trunk@24458 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 28 Sep 2011 15:54:32 +0000 (15:54 +0000)]

make this compile again without MPI

git-svn-id: https://svn.dealii.org/trunk@24457 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 28 Sep 2011 05:14:05 +0000 (05:14 +0000)]

make patches in DoFTools

git-svn-id: https://svn.dealii.org/trunk@24456 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 28 Sep 2011 05:10:06 +0000 (05:10 +0000)]

allow flexible levels

git-svn-id: https://svn.dealii.org/trunk@24455 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 28 Sep 2011 02:46:07 +0000 (02:46 +0000)]

Augment a note as suggested by Timo.

git-svn-id: https://svn.dealii.org/trunk@24454 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 28 Sep 2011 02:36:28 +0000 (02:36 +0000)]

Make the Timer class work even if we have configured for MPI but haven't initialized the MPI sub-system.

git-svn-id: https://svn.dealii.org/trunk@24453 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 28 Sep 2011 01:56:07 +0000 (01:56 +0000)]

updated tests

git-svn-id: https://svn.dealii.org/trunk@24452 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Sep 2011 18:06:13 +0000 (18:06 +0000)]

One one.

git-svn-id: https://svn.dealii.org/trunk@24451 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 27 Sep 2011 16:31:12 +0000 (16:31 +0000)]

Fix some typos, add a few explanations. Extent list of ignore files.

git-svn-id: https://svn.dealii.org/trunk@24450 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 27 Sep 2011 14:01:48 +0000 (14:01 +0000)]

fix some typos

git-svn-id: https://svn.dealii.org/trunk@24449 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Tue, 27 Sep 2011 07:43:37 +0000 (07:43 +0000)]

Simplify a test for PETSc libraries

git-svn-id: https://svn.dealii.org/trunk@24448 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Sep 2011 03:13:21 +0000 (03:13 +0000)]

Use cell->is_locally_owned() where possible.

git-svn-id: https://svn.dealii.org/trunk@24447 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Sep 2011 03:08:38 +0000 (03:08 +0000)]

Discuss the discretization issue.

git-svn-id: https://svn.dealii.org/trunk@24446 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 23:48:18 +0000 (23:48 +0000)]

Streamline initial temperature conditions, given the discussion in the introduction.

git-svn-id: https://svn.dealii.org/trunk@24445 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 23:47:15 +0000 (23:47 +0000)]

Finish (mostly) writing the introduction.

git-svn-id: https://svn.dealii.org/trunk@24444 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 23:20:26 +0000 (23:20 +0000)]

Link in step-32.

git-svn-id: https://svn.dealii.org/trunk@24443 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 26 Sep 2011 20:44:32 +0000 (20:44 +0000)]

test vertex patches

git-svn-id: https://svn.dealii.org/trunk@24442 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 26 Sep 2011 20:32:32 +0000 (20:32 +0000)]

additional output

git-svn-id: https://svn.dealii.org/trunk@24441 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 19:36:36 +0000 (19:36 +0000)]

A few more sentences.

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bangerth [Mon, 26 Sep 2011 19:29:29 +0000 (19:29 +0000)]

Remove name of unused function argument.

git-svn-id: https://svn.dealii.org/trunk@24439 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 19:26:43 +0000 (19:26 +0000)]

Make compile even without MPI.

git-svn-id: https://svn.dealii.org/trunk@24438 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 19:25:25 +0000 (19:25 +0000)]

Remove now outdated sections.

git-svn-id: https://svn.dealii.org/trunk@24437 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 19:03:52 +0000 (19:03 +0000)]

Convert the current
  #ifdef mpi
    MPI_Allreduce (...)
  #else
    ...
  #endif
into the more obvious
  Utilities::MPI::sum/max
statements.

git-svn-id: https://svn.dealii.org/trunk@24436 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 18:50:03 +0000 (18:50 +0000)]

Convert a few places where we can now use Utilities::MPI::sum/max.

git-svn-id: https://svn.dealii.org/trunk@24435 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 18:26:56 +0000 (18:26 +0000)]

Add array versions of the sum/max operators.

git-svn-id: https://svn.dealii.org/trunk@24434 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 17:54:20 +0000 (17:54 +0000)]

Add Utilities::MPI::max.

git-svn-id: https://svn.dealii.org/trunk@24433 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 26 Sep 2011 15:49:51 +0000 (15:49 +0000)]

One more change to make it work.

git-svn-id: https://svn.dealii.org/trunk@24432 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 26 Sep 2011 15:43:31 +0000 (15:43 +0000)]

declare function for cell patches

git-svn-id: https://svn.dealii.org/trunk@24431 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 26 Sep 2011 15:39:52 +0000 (15:39 +0000)]

Fix compilation without MPI, second part.

git-svn-id: https://svn.dealii.org/trunk@24430 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 26 Sep 2011 15:26:36 +0000 (15:26 +0000)]

BlockList obsolete

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kanschat [Mon, 26 Sep 2011 15:06:23 +0000 (15:06 +0000)]

add SparsityPattern::row_position

git-svn-id: https://svn.dealii.org/trunk@24428 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 26 Sep 2011 15:04:09 +0000 (15:04 +0000)]

Make compile without MPI.

git-svn-id: https://svn.dealii.org/trunk@24427 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 14:16:43 +0000 (14:16 +0000)]

Make compile...

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bangerth [Mon, 26 Sep 2011 13:53:32 +0000 (13:53 +0000)]

Move Utilities::System::MPI_InitFinalize to Utilities::MPI::MPI_InitFinalize.

git-svn-id: https://svn.dealii.org/trunk@24425 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 13:46:25 +0000 (13:46 +0000)]

Update a comment that is no longer accurate.

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bangerth [Mon, 26 Sep 2011 13:33:33 +0000 (13:33 +0000)]

Move #ifdef DEAL_II_USE_TRILINOS to before the documentation.

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bangerth [Mon, 26 Sep 2011 13:33:14 +0000 (13:33 +0000)]

Bring documentation of namespace up to date.

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bangerth [Mon, 26 Sep 2011 13:30:02 +0000 (13:30 +0000)]

Deprecate Utilities::System::program_uses_mpi in favor of Utilities::System::job_supports_mpi.

git-svn-id: https://svn.dealii.org/trunk@24421 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 13:20:22 +0000 (13:20 +0000)]

Rename Utilities::System::calculate_collective_mpi_min_max_avg to Utilities::MPI::min_max_avg.

git-svn-id: https://svn.dealii.org/trunk@24420 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 13:20:15 +0000 (13:20 +0000)]

Add an assertion.

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bangerth [Mon, 26 Sep 2011 12:52:19 +0000 (12:52 +0000)]

Move a first batch of MPI-related functions from Utilities::System to Utilities::MPI.

git-svn-id: https://svn.dealii.org/trunk@24418 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 12:36:30 +0000 (12:36 +0000)]

Update properties.

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bangerth [Mon, 26 Sep 2011 12:02:41 +0000 (12:02 +0000)]

Implement the new function in namespace Utilities::MPI instead. Give it a simpler name.

git-svn-id: https://svn.dealii.org/trunk@24416 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 02:54:51 +0000 (02:54 +0000)]

Go through the multithreading section.

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bangerth [Mon, 26 Sep 2011 02:36:04 +0000 (02:36 +0000)]

Make sure the test does not become trivial and obvious when using just one processor.

git-svn-id: https://svn.dealii.org/trunk@24414 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Sep 2011 02:18:50 +0000 (02:18 +0000)]

Fix forgotten output file.

git-svn-id: https://svn.dealii.org/trunk@24413 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 25 Sep 2011 22:14:04 +0000 (22:14 +0000)]

Add Utilities::System::calculate_collective_mpi_sum.

git-svn-id: https://svn.dealii.org/trunk@24412 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 25 Sep 2011 20:23:04 +0000 (20:23 +0000)]

restructure member function list

git-svn-id: https://svn.dealii.org/trunk@24411 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 25 Sep 2011 19:19:07 +0000 (19:19 +0000)]

Go through the parallelization on clusters section.

git-svn-id: https://svn.dealii.org/trunk@24409 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 25 Sep 2011 19:06:31 +0000 (19:06 +0000)]

More cross references.

git-svn-id: https://svn.dealii.org/trunk@24408 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 25 Sep 2011 18:10:56 +0000 (18:10 +0000)]

Add a couple entries.

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bangerth [Sun, 25 Sep 2011 18:09:17 +0000 (18:09 +0000)]

Remove a global function that apparently snuck in there by accident in r23944.

git-svn-id: https://svn.dealii.org/trunk@24406 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 24 Sep 2011 03:33:08 +0000 (03:33 +0000)]

Keep going through the introduction.

git-svn-id: https://svn.dealii.org/trunk@24403 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 24 Sep 2011 03:32:13 +0000 (03:32 +0000)]

Add a paragraph.

git-svn-id: https://svn.dealii.org/trunk@24402 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 21:49:09 +0000 (21:49 +0000)]

Add a whole bunch more.

git-svn-id: https://svn.dealii.org/trunk@24401 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 18:25:59 +0000 (18:25 +0000)]

Add necessary header file.

git-svn-id: https://svn.dealii.org/trunk@24400 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 18:23:54 +0000 (18:23 +0000)]

Allow compilation when using MPI but not p4est.

git-svn-id: https://svn.dealii.org/trunk@24399 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 14:42:15 +0000 (14:42 +0000)]

Write the solver section.

git-svn-id: https://svn.dealii.org/trunk@24398 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 14:32:23 +0000 (14:32 +0000)]

Uniformly use only initials.

git-svn-id: https://svn.dealii.org/trunk@24397 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 14:29:51 +0000 (14:29 +0000)]

Add two. Fix one spelling mistake.

git-svn-id: https://svn.dealii.org/trunk@24396 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 23 Sep 2011 14:07:30 +0000 (14:07 +0000)]

Add publication.

git-svn-id: https://svn.dealii.org/trunk@24395 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 14:05:12 +0000 (14:05 +0000)]

Add missing documentation of parameter.

git-svn-id: https://svn.dealii.org/trunk@24394 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 14:04:23 +0000 (14:04 +0000)]

Add missing doxygen marker.

git-svn-id: https://svn.dealii.org/trunk@24393 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 23 Sep 2011 14:03:10 +0000 (14:03 +0000)]

Try not to confuse doxygen.

git-svn-id: https://svn.dealii.org/trunk@24392 0785d39b-7218-0410-832d-ea1e28bc413d

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