]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
9 years agoTest that active cell indices are correct after copy_triangulation().
Wolfgang Bangerth [Fri, 10 Apr 2015 22:26:55 +0000 (17:26 -0500)]
Test that active cell indices are correct after copy_triangulation().

9 years agoAdapt a few existing tests to test the new active_cell_index() function.
Wolfgang Bangerth [Fri, 10 Apr 2015 22:26:22 +0000 (17:26 -0500)]
Adapt a few existing tests to test the new active_cell_index() function.

9 years agoUpdate test output.
Wolfgang Bangerth [Fri, 10 Apr 2015 21:23:58 +0000 (16:23 -0500)]
Update test output.

9 years agoDo not serialize active cell indices; rather, re-compute them upon loading a mesh.
Wolfgang Bangerth [Fri, 10 Apr 2015 21:21:44 +0000 (16:21 -0500)]
Do not serialize active cell indices; rather, re-compute them upon loading a mesh.

9 years agoCompute the active cell indices at the end of mesh creation and refinement.
Wolfgang Bangerth [Fri, 10 Apr 2015 21:20:43 +0000 (16:20 -0500)]
Compute the active cell indices at the end of mesh creation and refinement.

9 years agoAdd functions to the iterators to access the active_cell_index field.
Wolfgang Bangerth [Fri, 10 Apr 2015 21:17:35 +0000 (16:17 -0500)]
Add functions to the iterators to access the active_cell_index field.

9 years agoIntroduce arrays to store active_cell_index values for each cell.
Wolfgang Bangerth [Fri, 10 Apr 2015 12:41:52 +0000 (07:41 -0500)]
Introduce arrays to store active_cell_index values for each cell.

9 years agoMerge pull request #777 from bangerth/rename-boundary_indicator
Wolfgang Bangerth [Sun, 12 Apr 2015 16:31:15 +0000 (11:31 -0500)]
Merge pull request #777 from bangerth/rename-boundary_indicator

Rename boundary_indicator() to boundary_id()

9 years agoAdjust documentation: Use the non-deprecated version *_boundary_id() instead of ... 777/head
Wolfgang Bangerth [Sat, 11 Apr 2015 23:29:45 +0000 (18:29 -0500)]
Adjust documentation: Use the non-deprecated version *_boundary_id() instead of *_boundary_indicators().

9 years agoAdjust tests: Use the non-deprecated version *_boundary_id() instead of *_boundary_in...
Wolfgang Bangerth [Sat, 11 Apr 2015 23:27:12 +0000 (18:27 -0500)]
Adjust tests: Use the non-deprecated version *_boundary_id() instead of *_boundary_indicators().

9 years agoUse the non-deprecated version *_boundary_id() instead of *_boundary_indicators().
Wolfgang Bangerth [Sat, 11 Apr 2015 23:25:05 +0000 (18:25 -0500)]
Use the non-deprecated version *_boundary_id() instead of *_boundary_indicators().

9 years agoRename *_boundary_indicator() to *_boundary_id() and similar.
Wolfgang Bangerth [Sat, 11 Apr 2015 23:24:10 +0000 (18:24 -0500)]
Rename *_boundary_indicator() to *_boundary_id() and similar.

This spelling is more consistent with other functions of similar style. Deprecate
the old spelling of these functions.

9 years agoMerge pull request #782 from kronbichler/master
Luca Heltai [Sun, 12 Apr 2015 14:33:53 +0000 (16:33 +0200)]
Merge pull request #782 from kronbichler/master

Delete nonsensical assertion. Closes #781

9 years agoDelete nonsensical assertion. 782/head
Martin Kronbichler [Sun, 12 Apr 2015 14:22:31 +0000 (16:22 +0200)]
Delete nonsensical assertion.

9 years agoMerge pull request #780 from luca-heltai/fix-sparsity-tools
Martin Kronbichler [Sun, 12 Apr 2015 14:17:51 +0000 (16:17 +0200)]
Merge pull request #780 from luca-heltai/fix-sparsity-tools

Fixed SparsityTools not to use CompressedSimpleSparsity any more.

9 years agoFixed sparsity_tool.cc not to use CompressedSimpleSparsity. 780/head
Luca Heltai [Sun, 12 Apr 2015 09:22:51 +0000 (11:22 +0200)]
Fixed sparsity_tool.cc not to use CompressedSimpleSparsity.

9 years agoMerge pull request #779 from kronbichler/master
Matthias Maier [Sun, 12 Apr 2015 06:55:58 +0000 (08:55 +0200)]
Merge pull request #779 from kronbichler/master

Final fix of tests for hierarchical cell numbering.

9 years agoMerge pull request #778 from QiaoLei-88/step-33
Matthias Maier [Sun, 12 Apr 2015 06:55:07 +0000 (08:55 +0200)]
Merge pull request #778 from QiaoLei-88/step-33

step-33 sync right_hand_side after assemble

9 years agoFinal fix of tests for hierarchical cell numbering. 779/head
Martin Kronbichler [Sun, 12 Apr 2015 05:21:33 +0000 (07:21 +0200)]
Final fix of tests for hierarchical cell numbering.

9 years agoone trailing space. 778/head
Lei Qiao [Sun, 12 Apr 2015 02:13:21 +0000 (21:13 -0500)]
one trailing space.

9 years agocorrsponding document update.
Lei Qiao [Sun, 12 Apr 2015 02:08:38 +0000 (21:08 -0500)]
corrsponding document update.

9 years agostep-33 sync right_hand_side after assemble.
Lei Qiao [Sun, 12 Apr 2015 02:05:17 +0000 (21:05 -0500)]
step-33 sync right_hand_side after assemble.

9 years agoMerge pull request #776 from kronbichler/master
Timo Heister [Sat, 11 Apr 2015 20:51:03 +0000 (16:51 -0400)]
Merge pull request #776 from kronbichler/master

Fix SparsityTools::reorder_hierarchical with 64 bit integers

9 years agoFix SparsityTools::reorder_hierarchical with 64 bit integers 776/head
Martin Kronbichler [Sat, 11 Apr 2015 20:17:14 +0000 (22:17 +0200)]
Fix SparsityTools::reorder_hierarchical with 64 bit integers

9 years agoMerge pull request #773 from kronbichler/master
Bruno Turcksin [Sat, 11 Apr 2015 15:57:02 +0000 (10:57 -0500)]
Merge pull request #773 from kronbichler/master

Adjust test output in mpi/ due to yesterday's commit.

9 years agoAdjust test output in mpi/ due to yesterday's commit. 773/head
Martin Kronbichler [Sat, 11 Apr 2015 15:51:13 +0000 (17:51 +0200)]
Adjust test output in mpi/ due to yesterday's commit.

9 years agoMerge pull request #770 from bangerth/doc-update-14
Matthias Maier [Sat, 11 Apr 2015 13:32:26 +0000 (15:32 +0200)]
Merge pull request #770 from bangerth/doc-update-14

A follow-up patch to one from yesterday: Update the rest of the output of step-32.

9 years agoMerge pull request #771 from bangerth/fix-accidental-multiline-comment
Matthias Maier [Sat, 11 Apr 2015 13:31:19 +0000 (15:31 +0200)]
Merge pull request #771 from bangerth/fix-accidental-multiline-comment

Avoid ending comments with a backslash.

9 years agoAvoid ending comments with a backslash. 771/head
Wolfgang Bangerth [Sat, 11 Apr 2015 12:11:36 +0000 (07:11 -0500)]
Avoid ending comments with a backslash.

The compiler interprets this as a continuation line and issues a warning.
The warning is of no consequence in this particular case, but let's try
to avoid this here.

9 years agoAlso update the final time step of the output. 770/head
Wolfgang Bangerth [Sat, 11 Apr 2015 11:29:12 +0000 (06:29 -0500)]
Also update the final time step of the output.

9 years agoMerge pull request #767 from tamiko/clean_up_lac_interfaces
Matthias Maier [Sat, 11 Apr 2015 09:26:57 +0000 (11:26 +0200)]
Merge pull request #767 from tamiko/clean_up_lac_interfaces

Small cleanup in two matrix interfaces, documentation

9 years agodocumentation fixes 767/head
Matthias Maier [Sat, 11 Apr 2015 09:24:50 +0000 (11:24 +0200)]
documentation fixes

9 years agochanges.h entry
Matthias Maier [Fri, 10 Apr 2015 22:56:35 +0000 (00:56 +0200)]
changes.h entry

9 years agoSpecialize LAPACKFullMatrix::vmult (etc.) interface
Matthias Maier [Fri, 10 Apr 2015 22:33:36 +0000 (00:33 +0200)]
Specialize LAPACKFullMatrix::vmult (etc.) interface

9 years agoRemove vmult_add and Tvmult_add from SparseDirectUMFPACK
Matthias Maier [Fri, 10 Apr 2015 15:48:38 +0000 (17:48 +0200)]
Remove vmult_add and Tvmult_add from SparseDirectUMFPACK

9 years agoSmall documentation update
Matthias Maier [Fri, 10 Apr 2015 15:45:46 +0000 (17:45 +0200)]
Small documentation update

9 years agoDocumentation fixes
Matthias Maier [Fri, 10 Apr 2015 15:27:33 +0000 (17:27 +0200)]
Documentation fixes

9 years agoMerge pull request #769 from bangerth/doc-update-17
Matthias Maier [Sat, 11 Apr 2015 06:58:14 +0000 (08:58 +0200)]
Merge pull request #769 from bangerth/doc-update-17

Doc update 17

9 years agoMerge pull request #760 from kronbichler/master
Matthias Maier [Sat, 11 Apr 2015 06:57:44 +0000 (08:57 +0200)]
Merge pull request #760 from kronbichler/master

Improve ordering of coarse cells in parallel::distributed::Triangulation

9 years agoMerge pull request #768 from bangerth/doc-update-16
Matthias Maier [Sat, 11 Apr 2015 06:55:19 +0000 (08:55 +0200)]
Merge pull request #768 from bangerth/doc-update-16

Reference the class upon which this finite element is built.

9 years agoAdjust test output due to changed ordering of cells 760/head
Martin Kronbichler [Fri, 10 Apr 2015 09:33:28 +0000 (11:33 +0200)]
Adjust test output due to changed ordering of cells

9 years agoList changes
Martin Kronbichler [Fri, 10 Apr 2015 09:25:38 +0000 (11:25 +0200)]
List changes

9 years agoChange algorithm for coarse cell ordering in parallel::distributed::Triangulation
Martin Kronbichler [Fri, 10 Apr 2015 09:25:28 +0000 (11:25 +0200)]
Change algorithm for coarse cell ordering in parallel::distributed::Triangulation

9 years agoImplement GridTools::get_vertex_connectivity_of_cells
Martin Kronbichler [Fri, 10 Apr 2015 09:15:21 +0000 (11:15 +0200)]
Implement GridTools::get_vertex_connectivity_of_cells

9 years agoImplement hierarchical reordering of a SparsityPattern
Martin Kronbichler [Fri, 10 Apr 2015 08:27:06 +0000 (10:27 +0200)]
Implement hierarchical reordering of a SparsityPattern

9 years agoChange arguments for SparsityTools::reorder_Cuthill_McKee and GridTools::get_face_con...
Martin Kronbichler [Fri, 10 Apr 2015 07:49:58 +0000 (09:49 +0200)]
Change arguments for SparsityTools::reorder_Cuthill_McKee and GridTools::get_face_connectivity_of_cells to DynamicSparsityPattern.

9 years agoUpdate the results section following Luca's changed to allow the use 769/head
Wolfgang Bangerth [Sat, 11 Apr 2015 02:34:01 +0000 (21:34 -0500)]
Update the results section following Luca's changed to allow the use
of a manifold description.

9 years agoFix a grammar error in #744 and provide slightly more documentation.
Wolfgang Bangerth [Sat, 11 Apr 2015 02:10:19 +0000 (21:10 -0500)]
Fix a grammar error in #744 and provide slightly more documentation.

9 years agoMerge pull request #744 from luca-heltai/boundary-to-manifold-part-2
Wolfgang Bangerth [Sat, 11 Apr 2015 01:56:12 +0000 (20:56 -0500)]
Merge pull request #744 from luca-heltai/boundary-to-manifold-part-2

Transition to manifold - Part 2 - Examples 18 to 49 (end)

9 years agoReference the class upon which this finite element is built. 768/head
Wolfgang Bangerth [Sat, 11 Apr 2015 01:33:41 +0000 (20:33 -0500)]
Reference the class upon which this finite element is built.

9 years agoMerge pull request #754 from davydden/fe_q_hierarchical
Wolfgang Bangerth [Sat, 11 Apr 2015 01:25:38 +0000 (20:25 -0500)]
Merge pull request #754 from davydden/fe_q_hierarchical

missing hp-functions and other mods in FE_Q_Hierarchical

9 years agoMerge pull request #766 from bangerth/fix-64bit-issue-2
Matthias Maier [Fri, 10 Apr 2015 23:42:22 +0000 (01:42 +0200)]
Merge pull request #766 from bangerth/fix-64bit-issue-2

Make compile in 64bit mode.

9 years agoMake compile in 64bit mode. 766/head
Wolfgang Bangerth [Fri, 10 Apr 2015 22:46:26 +0000 (17:46 -0500)]
Make compile in 64bit mode.

9 years agomissing hp-functions and other mods in FE_Q_Hierarchical 754/head
Denis Davydov [Thu, 2 Apr 2015 12:41:04 +0000 (14:41 +0200)]
missing hp-functions and other mods in FE_Q_Hierarchical

(i)   hp_line_dof_identities and hp_quad_dof_identities
(ii)  added an assert and description to invert_numbering
(iii) added comments on dofs_subcell and dofs_cell
(iv)  return the already calculated prolongation matrix
(v)   implement get_interpolation_matrix
(vi)  reimplement interpolate() and throw an Assert
(vii) tests: injection, hp_constraints_q_hierarhical,
      continuity of basis functions

9 years agoMerge pull request #758 from QiaoLei-88/step40runclean
Matthias Maier [Thu, 9 Apr 2015 21:53:17 +0000 (23:53 +0200)]
Merge pull request #758 from QiaoLei-88/step40runclean

add '*.vtu *.pvtu' to CLEAN_UP_FILES list in step-40.

9 years agoadd '*.vtu *.pvtu' to CLEAN_UP_FILES list in step-40. 758/head
Lei Qiao [Thu, 9 Apr 2015 20:29:09 +0000 (15:29 -0500)]
add '*.vtu *.pvtu' to CLEAN_UP_FILES list in step-40.

9 years agoMerge pull request #756 from nicola-giuliani/telles-doc
Matthias Maier [Thu, 9 Apr 2015 15:16:26 +0000 (17:16 +0200)]
Merge pull request #756 from nicola-giuliani/telles-doc

improved the documentation of QTelles

9 years agoerased begin end 756/head
Nicola Giuliani [Thu, 9 Apr 2015 14:09:56 +0000 (16:09 +0200)]
erased begin end

9 years agoimproved the documentation of QTelles
Nicola Giuliani [Thu, 9 Apr 2015 13:54:53 +0000 (15:54 +0200)]
improved the documentation of QTelles

9 years agoMerge pull request #753 from tamiko/fix_testsuite
Wolfgang Bangerth [Wed, 8 Apr 2015 18:28:32 +0000 (13:28 -0500)]
Merge pull request #753 from tamiko/fix_testsuite

Testsuite: Bugfix: Take over specific variables to the test subprojects

9 years agoMerge pull request #752 from bangerth/doc-update-15
Matthias Maier [Wed, 8 Apr 2015 16:09:21 +0000 (18:09 +0200)]
Merge pull request #752 from bangerth/doc-update-15

Some updates to BlockSparseMatrixEZ.

9 years agoTestsuite: Bugfix: Take over specific variables to the test subprojects 753/head
Matthias Maier [Wed, 8 Apr 2015 16:03:53 +0000 (18:03 +0200)]
Testsuite: Bugfix: Take over specific variables to the test subprojects

9 years agoUpdate documentation. 752/head
Wolfgang Bangerth [Wed, 8 Apr 2015 15:58:52 +0000 (10:58 -0500)]
Update documentation.

9 years agoAvoid the use of deprecated functions.
Wolfgang Bangerth [Wed, 8 Apr 2015 15:57:16 +0000 (10:57 -0500)]
Avoid the use of deprecated functions.

9 years agoDeprecate the n_rows() and n_cols() member functions. The SparseMatrixEZ class
Wolfgang Bangerth [Wed, 8 Apr 2015 15:56:25 +0000 (10:56 -0500)]
Deprecate the n_rows() and n_cols() member functions. The SparseMatrixEZ class
is the only matrix class that has these functions, and it has m() and n() like
all other matrix classes.

9 years agoMinor update to comments.
Wolfgang Bangerth [Wed, 8 Apr 2015 15:52:27 +0000 (10:52 -0500)]
Minor update to comments.

9 years agoMerge pull request #751 from tamiko/fix_documentation
Luca Heltai [Wed, 8 Apr 2015 14:01:39 +0000 (16:01 +0200)]
Merge pull request #751 from tamiko/fix_documentation

Fix some typos...

9 years agoFix some typos... 751/head
Matthias Maier [Wed, 8 Apr 2015 13:55:06 +0000 (15:55 +0200)]
Fix some typos...

9 years agoMerge pull request #749 from bangerth/fix-p4est-interface
Matthias Maier [Wed, 8 Apr 2015 12:31:58 +0000 (14:31 +0200)]
Merge pull request #749 from bangerth/fix-p4est-interface

Adjust p4est interface.

9 years agoAdjust p4est interface. 749/head
Wolfgang Bangerth [Wed, 8 Apr 2015 12:09:32 +0000 (07:09 -0500)]
Adjust p4est interface.

The p4est_connectivity_load function used to take an unsigned long as argument,
but this has been changed to size_t in p4est 1.0. This makes no difference on
64 bit systems, but leads to compiler errors on 32 bit systems. Fix this.

9 years agoAdded back also a HyperShellBoundary to step-32. 744/head
Luca Heltai [Tue, 7 Apr 2015 14:33:52 +0000 (16:33 +0200)]
Added back also a HyperShellBoundary to step-32.

9 years agoAdded entry in changes.h
Luca Heltai [Mon, 6 Apr 2015 20:10:33 +0000 (22:10 +0200)]
Added entry in changes.h

9 years agoFixed indentation.
Luca Heltai [Mon, 6 Apr 2015 20:06:56 +0000 (22:06 +0200)]
Fixed indentation.

9 years agoFixed step-49.
Luca Heltai [Mon, 6 Apr 2015 20:04:52 +0000 (22:04 +0200)]
Fixed step-49.

9 years agoFixed step-47.
Luca Heltai [Tue, 31 Mar 2015 19:26:10 +0000 (21:26 +0200)]
Fixed step-47.

9 years agoFixed step-42.
Luca Heltai [Tue, 31 Mar 2015 19:22:45 +0000 (21:22 +0200)]
Fixed step-42.

9 years agoFixed step-38.
Luca Heltai [Tue, 31 Mar 2015 19:12:23 +0000 (21:12 +0200)]
Fixed step-38.

9 years agoFixed step-34.
Luca Heltai [Tue, 31 Mar 2015 19:07:32 +0000 (21:07 +0200)]
Fixed step-34.

9 years agoFixed step-32.
Luca Heltai [Tue, 31 Mar 2015 19:00:37 +0000 (21:00 +0200)]
Fixed step-32.

9 years agoFixed step-29.
Luca Heltai [Tue, 31 Mar 2015 18:55:22 +0000 (20:55 +0200)]
Fixed step-29.

9 years agoFixed step-24.
Luca Heltai [Fri, 27 Mar 2015 13:38:02 +0000 (14:38 +0100)]
Fixed step-24.

9 years agoFixed step-18.
Luca Heltai [Thu, 26 Mar 2015 09:48:55 +0000 (10:48 +0100)]
Fixed step-18.

9 years agoMerge pull request #746 from tamiko/testsuite_fixes
Wolfgang Bangerth [Tue, 7 Apr 2015 11:57:10 +0000 (06:57 -0500)]
Merge pull request #746 from tamiko/testsuite_fixes

Testsuite fixes

9 years agoTestsuite: Remove buggy and undocumented variable handling 746/head
Matthias Maier [Tue, 7 Apr 2015 09:34:46 +0000 (11:34 +0200)]
Testsuite: Remove buggy and undocumented variable handling

9 years agoTestsuite: Update documentation, remove obsolete paragraph
Matthias Maier [Tue, 7 Apr 2015 09:34:25 +0000 (11:34 +0200)]
Testsuite: Update documentation, remove obsolete paragraph

9 years agoMerge pull request #718 from mtezzele/bernstein
Luca Heltai [Tue, 7 Apr 2015 09:16:44 +0000 (11:16 +0200)]
Merge pull request #718 from mtezzele/bernstein

Added a finite element based on Bernstein basis polynomials

9 years agoAdded an implementation for bernstein polynomials and finite elements 718/head
Marco Tezzele [Tue, 31 Mar 2015 09:28:56 +0000 (11:28 +0200)]
Added an implementation for bernstein polynomials and finite elements

9 years agoMerge pull request #743 from tamiko/fix_an_assert
Luca Heltai [Mon, 6 Apr 2015 20:15:03 +0000 (22:15 +0200)]
Merge pull request #743 from tamiko/fix_an_assert

Bugfix: Fix an assert in BlockVectorBase ...

9 years agoBugfix: Fix an assert in BlockVectorBase ... 743/head
Matthias Maier [Mon, 6 Apr 2015 19:53:07 +0000 (21:53 +0200)]
Bugfix: Fix an assert in BlockVectorBase ...

... and allow multiplication with a negative factor.

9 years agoMerge pull request #739 from bangerth/doc-update-14
Martin Kronbichler [Mon, 6 Apr 2015 18:08:21 +0000 (20:08 +0200)]
Merge pull request #739 from bangerth/doc-update-14

Update docs for a statement one of my students just stumbled over.

9 years agoMerge pull request #741 from luca-heltai/update-mappingfe-doc
Wolfgang Bangerth [Mon, 6 Apr 2015 17:51:17 +0000 (12:51 -0500)]
Merge pull request #741 from luca-heltai/update-mappingfe-doc

Fixing missing issues with #727

9 years agoFixed comment by tamiko. 741/head
Luca Heltai [Mon, 6 Apr 2015 17:50:01 +0000 (19:50 +0200)]
Fixed comment by tamiko.

9 years agoMerge pull request #740 from bangerth/doc-update-15
Matthias Maier [Mon, 6 Apr 2015 16:52:39 +0000 (18:52 +0200)]
Merge pull request #740 from bangerth/doc-update-15

Update an erroneous comment.

9 years agoUpdate an erroneous comment. 740/head
Wolfgang Bangerth [Mon, 6 Apr 2015 15:42:27 +0000 (10:42 -0500)]
Update an erroneous comment.

9 years agoUpdate docs for a statement one of my students just stumbled over. 739/head
Wolfgang Bangerth [Mon, 6 Apr 2015 15:38:44 +0000 (10:38 -0500)]
Update docs for a statement one of my students just stumbled over.

9 years agoMerge pull request #727 from mtezzele/mapping_fe
Luca Heltai [Mon, 6 Apr 2015 10:32:43 +0000 (12:32 +0200)]
Merge pull request #727 from mtezzele/mapping_fe

New MappingFE

9 years agoMerge pull request #738 from tamiko/fix_testsuite_setup
Luca Heltai [Mon, 6 Apr 2015 10:24:21 +0000 (12:24 +0200)]
Merge pull request #738 from tamiko/fix_testsuite_setup

Testsuite: Correctly store TEST_PICKUP_REGEX and similar variables in testsuite subprojects

9 years agoTestsuite: Correctly store TEST_PICKUP_REGEX and similar variables in testsuite subpr... 738/head
Matthias Maier [Mon, 6 Apr 2015 00:59:01 +0000 (02:59 +0200)]
Testsuite: Correctly store TEST_PICKUP_REGEX and similar variables in testsuite subprojects

9 years agoMerge pull request #731 from bangerth/minor-update
Luca Heltai [Sun, 5 Apr 2015 21:39:37 +0000 (23:39 +0200)]
Merge pull request #731 from bangerth/minor-update

Make a shift argument into a Tensor<1,dim> from a Point<dim>.

9 years agoMerge pull request #737 from tamiko/add_typedef
Wolfgang Bangerth [Sun, 5 Apr 2015 21:34:16 +0000 (16:34 -0500)]
Merge pull request #737 from tamiko/add_typedef

Provide a "vector_type" typedef in the (iterative) solver interface


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