https://gitweb.dealii.org/

Wolfgang Bangerth [Wed, 9 Oct 2013 12:42:30 +0000 (12:42 +0000)]

Rework.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31185 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Oct 2013 12:32:54 +0000 (12:32 +0000)]

Only set TMPDIR if it isn't already set.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31184 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Oct 2013 12:30:55 +0000 (12:30 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31183 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 20:37:11 +0000 (20:37 +0000)]

Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31181 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Tue, 8 Oct 2013 20:02:32 +0000 (20:02 +0000)]

take over r31179 to mainline

git-svn-id: https://svn.dealii.org/trunk@31180 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Tue, 8 Oct 2013 20:00:04 +0000 (20:00 +0000)]

check return value of MPI_File_open

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31179 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 19:47:03 +0000 (19:47 +0000)]

Remove outdated svn:ignore.

git-svn-id: https://svn.dealii.org/trunk@31178 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 19:46:27 +0000 (19:46 +0000)]

Rework.

git-svn-id: https://svn.dealii.org/trunk@31177 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 19:37:45 +0000 (19:37 +0000)]

Link to appropriate tag files.

git-svn-id: https://svn.dealii.org/trunk@31176 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 19:36:00 +0000 (19:36 +0000)]

Slightly reword top note.

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Wolfgang Bangerth [Tue, 8 Oct 2013 19:34:27 +0000 (19:34 +0000)]

Rework.

git-svn-id: https://svn.dealii.org/trunk@31174 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 19:03:30 +0000 (19:03 +0000)]

Update some of the information at the bottom. The link to DEAL no
longer works, so delete it.

git-svn-id: https://svn.dealii.org/trunk@31173 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Tue, 8 Oct 2013 14:37:45 +0000 (14:37 +0000)]

add test for write_vtu_in_parallel

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31172 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 14:18:30 +0000 (14:18 +0000)]

Improve error message.

git-svn-id: https://svn.dealii.org/trunk@31171 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 12:46:17 +0000 (12:46 +0000)]

Release mutex on the same thread that acquired it, to satisfy POSIX requirements.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31170 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 12:41:27 +0000 (12:41 +0000)]

Run second part of test only if it's different from the first. Adjust test output.

git-svn-id: https://svn.dealii.org/trunk@31169 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Oct 2013 00:17:45 +0000 (00:17 +0000)]

Implement bilinear interpolation in a much faster way.

git-svn-id: https://svn.dealii.org/trunk@31168 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 23:52:01 +0000 (23:52 +0000)]

No longer output the residual to output files.

git-svn-id: https://svn.dealii.org/trunk@31167 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 23:50:20 +0000 (23:50 +0000)]

Compute locally owned active set as intersection of two sets.

git-svn-id: https://svn.dealii.org/trunk@31166 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 7 Oct 2013 21:55:54 +0000 (21:55 +0000)]

enhance SparseMatrix documentation

git-svn-id: https://svn.dealii.org/trunk@31165 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 14:51:55 +0000 (14:51 +0000)]

Minor adjustments.

git-svn-id: https://svn.dealii.org/trunk@31164 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 13:43:08 +0000 (13:43 +0000)]

Patch by Mayank Subharwal and Andreas Putz: Make GridIn read VTK files as well.

git-svn-id: https://svn.dealii.org/trunk@31163 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 13:28:39 +0000 (13:28 +0000)]

Search first for the file with its complete given name. I.e., if someone
searches for <mesh.vtk> with additional suffix <.vtk>, then still find the
file if it exists before trying <mesh.vtk.vtk>.

git-svn-id: https://svn.dealii.org/trunk@31162 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 03:42:41 +0000 (03:42 +0000)]

Rewrite in parts.

git-svn-id: https://svn.dealii.org/trunk@31161 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 03:08:28 +0000 (03:08 +0000)]

Remove extraneous space.

git-svn-id: https://svn.dealii.org/trunk@31160 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 02:54:40 +0000 (02:54 +0000)]

Link in step-42.

git-svn-id: https://svn.dealii.org/trunk@31159 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 02:42:34 +0000 (02:42 +0000)]

Update svn:ignore.

git-svn-id: https://svn.dealii.org/trunk@31158 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 7 Oct 2013 02:35:51 +0000 (02:35 +0000)]

Finish documenting.

git-svn-id: https://svn.dealii.org/trunk@31157 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 6 Oct 2013 21:03:56 +0000 (21:03 +0000)]

Comment on solve_newton().

git-svn-id: https://svn.dealii.org/trunk@31155 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 6 Oct 2013 20:00:42 +0000 (20:00 +0000)]

Bugfix: Pick up the Fortran interface for lapack correctly

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31154 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 6 Oct 2013 19:41:34 +0000 (19:41 +0000)]

Bugfix: build_tests should be recompiled if the underlying library changes...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31153 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 6 Oct 2013 18:21:36 +0000 (18:21 +0000)]

Fix a bug introduced in the previous version.

git-svn-id: https://svn.dealii.org/trunk@31152 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 5 Oct 2013 22:37:33 +0000 (22:37 +0000)]

Some more documentation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31151 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 5 Oct 2013 17:25:48 +0000 (17:25 +0000)]

First part of documentation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31150 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sat, 5 Oct 2013 16:08:10 +0000 (16:08 +0000)]

Switch Assert to AssertThrow where a PETScInternalError can occur.

git-svn-id: https://svn.dealii.org/trunk@31149 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 5 Oct 2013 15:03:16 +0000 (15:03 +0000)]

Doc: Update CMake documentation. Add a section about configuration and
building, reflect recent changes

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Matthias Maier [Sat, 5 Oct 2013 13:01:10 +0000 (13:01 +0000)]

Doc: Rearrange two paragraphs

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31147 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 5 Oct 2013 12:59:41 +0000 (12:59 +0000)]

Update readme on Windows support and minimal gcc version

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31146 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 5 Oct 2013 12:32:43 +0000 (12:32 +0000)]

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31145 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 5 Oct 2013 12:17:40 +0000 (12:17 +0000)]

Move forward.

git-svn-id: https://svn.dealii.org/trunk@31144 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Sat, 5 Oct 2013 11:48:41 +0000 (11:48 +0000)]

add Stephan's paper

git-svn-id: https://svn.dealii.org/trunk@31143 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 5 Oct 2013 11:46:11 +0000 (11:46 +0000)]

Make clang happy

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31142 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 5 Oct 2013 11:32:20 +0000 (11:32 +0000)]

Indent.

git-svn-id: https://svn.dealii.org/trunk@31141 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sat, 5 Oct 2013 03:52:30 +0000 (03:52 +0000)]

Add a strangely missing AssertThrow.

git-svn-id: https://svn.dealii.org/trunk@31139 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 5 Oct 2013 00:50:10 +0000 (00:50 +0000)]

Print a detailed info message

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31135 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 4 Oct 2013 23:04:52 +0000 (23:04 +0000)]

Last changes for the day. Good progress :-)

git-svn-id: https://svn.dealii.org/trunk@31132 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 4 Oct 2013 22:32:36 +0000 (22:32 +0000)]

More documentation.

git-svn-id: https://svn.dealii.org/trunk@31131 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 4 Oct 2013 21:33:36 +0000 (21:33 +0000)]

More documentation.

git-svn-id: https://svn.dealii.org/trunk@31130 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 4 Oct 2013 21:32:57 +0000 (21:32 +0000)]

Update TODO

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Matthias Maier [Fri, 4 Oct 2013 21:30:23 +0000 (21:30 +0000)]

Only run these tests if functionparser is available

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31128 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 4 Oct 2013 21:08:43 +0000 (21:08 +0000)]

Small Bugfixes and Cleanup

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31127 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 4 Oct 2013 20:30:03 +0000 (20:30 +0000)]

Proper fix, some final rearrangement.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31126 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 4 Oct 2013 19:58:21 +0000 (19:58 +0000)]

Make run again in parallel.

git-svn-id: https://svn.dealii.org/trunk@31125 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 4 Oct 2013 19:32:41 +0000 (19:32 +0000)]

Remove unused variables.

git-svn-id: https://svn.dealii.org/trunk@31124 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 4 Oct 2013 18:37:12 +0000 (18:37 +0000)]

Undo 31119 and fix it by doing the same thing in debug and release mode.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31123 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 4 Oct 2013 18:23:40 +0000 (18:23 +0000)]

better way to fix release mode tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31122 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 4 Oct 2013 18:21:34 +0000 (18:21 +0000)]

fix test in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31121 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 4 Oct 2013 18:20:58 +0000 (18:20 +0000)]

fix test in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31120 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 4 Oct 2013 18:05:29 +0000 (18:05 +0000)]

test has different output in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31119 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 4 Oct 2013 13:05:10 +0000 (13:05 +0000)]

Some compilers apparently want to have a full declaration of ConstraintMatrix
if they see it in a default argument.

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Wolfgang Bangerth [Fri, 4 Oct 2013 13:03:44 +0000 (13:03 +0000)]

Qualify strcpy with std::

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Matthias Maier [Fri, 4 Oct 2013 07:47:41 +0000 (07:47 +0000)]

Quick fix

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Martin Kronbichler [Fri, 4 Oct 2013 07:29:31 +0000 (07:29 +0000)]

Improve exception messages

git-svn-id: https://svn.dealii.org/trunk@31115 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 3 Oct 2013 23:52:35 +0000 (23:52 +0000)]

Work around a POSIX violation.

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Matthias Maier [Thu, 3 Oct 2013 23:31:42 +0000 (23:31 +0000)]

Remove obsolete file

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Matthias Maier [Thu, 3 Oct 2013 23:31:04 +0000 (23:31 +0000)]

Port new tests

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Matthias Maier [Thu, 3 Oct 2013 23:31:02 +0000 (23:31 +0000)]

Merge trunk into branch_port_the_testsuite

Conflicts:
tests/deal.II/grid_tools_05.output
tests/deal.II/grid_tools_05/cmp/generic

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Matthias Maier [Thu, 3 Oct 2013 23:19:13 +0000 (23:19 +0000)]

Bugfix

git-svn-id: https://svn.dealii.org/trunk@31110 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 3 Oct 2013 23:17:06 +0000 (23:17 +0000)]

Bugfix: resolve issue 105

git-svn-id: https://svn.dealii.org/trunk@31109 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 3 Oct 2013 23:13:32 +0000 (23:13 +0000)]

Clear buffer at the end of the program.

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Matthias Maier [Thu, 3 Oct 2013 22:06:49 +0000 (22:06 +0000)]

Bugfix: Only include libparmetis to the link interface if its likely that it belongs to the metis library..

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Matthias Maier [Thu, 3 Oct 2013 21:32:19 +0000 (21:32 +0000)]

Bugfix: Remove obsolete code

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Wolfgang Bangerth [Thu, 3 Oct 2013 20:39:51 +0000 (20:39 +0000)]

Rename a few variables. Initialize vectors with vector sets and communicators, rather than other vectors, to make clear that the vector is not in fact copied, and to make it clearer what index set is being used.

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Wolfgang Bangerth [Thu, 3 Oct 2013 20:08:21 +0000 (20:08 +0000)]

Remove file accidentally added.

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Wolfgang Bangerth [Thu, 3 Oct 2013 20:07:55 +0000 (20:07 +0000)]

Remove one variable whose value is always equal to another.

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Wolfgang Bangerth [Thu, 3 Oct 2013 20:00:34 +0000 (20:00 +0000)]

Remove one variable whose value is always equal to another.

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Timo Heister [Thu, 3 Oct 2013 19:19:28 +0000 (19:19 +0000)]

fix script

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Wolfgang Bangerth [Thu, 3 Oct 2013 19:11:07 +0000 (19:11 +0000)]

Correct output for now higher precision.

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Timo Heister [Thu, 3 Oct 2013 18:02:44 +0000 (18:02 +0000)]

fix test: release mode does not sort indices for performance reasons

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Timo Heister [Thu, 3 Oct 2013 17:56:15 +0000 (17:56 +0000)]

change metis test output. probably due to newer metis version

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Timo Heister [Thu, 3 Oct 2013 17:52:06 +0000 (17:52 +0000)]

fix test

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Toby D. Young [Thu, 3 Oct 2013 17:47:32 +0000 (17:47 +0000)]

do a todo - use PetscReal where real_type is needed.

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Wolfgang Bangerth [Thu, 3 Oct 2013 17:11:10 +0000 (17:11 +0000)]

Some more tests whose outputs have changed.

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Wolfgang Bangerth [Thu, 3 Oct 2013 16:15:43 +0000 (16:15 +0000)]

Commit output files that have mysteriously changed on the branch.

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Wolfgang Bangerth [Thu, 3 Oct 2013 14:27:39 +0000 (14:27 +0000)]

Commit output files that have mysteriously changed on the branch.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31088 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Thu, 3 Oct 2013 13:38:48 +0000 (13:38 +0000)]

Set default problem type for SLEPc - this should be the GNHEP.

git-svn-id: https://svn.dealii.org/trunk@31084 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 3 Oct 2013 01:47:18 +0000 (01:47 +0000)]

grouping and repeat header

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31082 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 3 Oct 2013 01:38:34 +0000 (01:38 +0000)]

add comment

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31081 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 3 Oct 2013 01:36:20 +0000 (01:36 +0000)]

optional argument for makereport.py: branch name

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31080 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 2 Oct 2013 22:09:47 +0000 (22:09 +0000)]

Remove obsolete directories

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31079 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 18:25:01 +0000 (18:25 +0000)]

add to changelog

git-svn-id: https://svn.dealii.org/trunk@31078 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 17:59:44 +0000 (17:59 +0000)]

do not use n_default_threads but n_threads()

git-svn-id: https://svn.dealii.org/trunk@31077 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 17:52:30 +0000 (17:52 +0000)]

replace n_default_threads by n_threads()

git-svn-id: https://svn.dealii.org/trunk@31076 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 17:51:27 +0000 (17:51 +0000)]

leave some comments and todos

git-svn-id: https://svn.dealii.org/trunk@31075 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 17:40:44 +0000 (17:40 +0000)]

do not use n_default_threads

git-svn-id: https://svn.dealii.org/trunk@31074 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 17:40:15 +0000 (17:40 +0000)]

introduce new n_threads(), deprecate n_default_threads

git-svn-id: https://svn.dealii.org/trunk@31073 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 17:35:40 +0000 (17:35 +0000)]

remove references to n_default_threads() in error_estimator.h that are ignored anyway.

git-svn-id: https://svn.dealii.org/trunk@31072 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 2 Oct 2013 17:30:01 +0000 (17:30 +0000)]

only use TBB in workstream if we are allowed to use more than one thread

git-svn-id: https://svn.dealii.org/trunk@31071 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 2 Oct 2013 17:00:47 +0000 (17:00 +0000)]

Now when WorkStream uses graph coloring and that there are not enough elements in a color, the elements are aggregated and copied serially.

git-svn-id: https://svn.dealii.org/trunk@31070 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 2 Oct 2013 15:06:52 +0000 (15:06 +0000)]

Make it compile.

git-svn-id: https://svn.dealii.org/trunk@31069 0785d39b-7218-0410-832d-ea1e28bc413d

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