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https://gitweb.dealii.org/ - dealii-svn.git/log
kronbichler [Fri, 31 May 2013 11:37:50 +0000 (11:37 +0000)]
Fix uninitialized memory.
git-svn-id: https://svn.dealii.org/trunk@29680
0785d39b -7218-0410-832d-
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kronbichler [Fri, 31 May 2013 09:48:26 +0000 (09:48 +0000)]
Fix a few bugs with distribute. constraint_matrix_trilinos_bug/ncpu_10 still not working. Try to figure it out.
git-svn-id: https://svn.dealii.org/trunk@29679
0785d39b -7218-0410-832d-
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kronbichler [Fri, 31 May 2013 08:14:35 +0000 (08:14 +0000)]
Make distribute() work properly with parallel::distributed::Vector. Also cleanup in extracting locally owned dofs of Trilinos vector. Distributing constraints with parallel::distributed::Vector has become simpler now, so use that in step-48.
git-svn-id: https://svn.dealii.org/trunk@29678
0785d39b -7218-0410-832d-
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bangerth [Fri, 31 May 2013 04:53:43 +0000 (04:53 +0000)]
Make ConstraintMatrix::distribute also work for block vectors. Needs a couple extra functions in the PETSc block vectors.
git-svn-id: https://svn.dealii.org/trunk@29677
0785d39b -7218-0410-832d-
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bangerth [Fri, 31 May 2013 04:51:41 +0000 (04:51 +0000)]
Remove tests that now no longer make sense.
git-svn-id: https://svn.dealii.org/trunk@29676
0785d39b -7218-0410-832d-
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bangerth [Fri, 31 May 2013 04:21:10 +0000 (04:21 +0000)]
Improve documentation slightly.
git-svn-id: https://svn.dealii.org/trunk@29675
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bangerth [Thu, 30 May 2013 22:29:18 +0000 (22:29 +0000)]
Check in a revision of the ConstraintMatrix::distribute patch. I'm not sure it actually works but the network here is going to shut down in a few minutes and I'd like to have it sent to the tester. Will re-evaluate later today.
git-svn-id: https://svn.dealii.org/trunk@29674
0785d39b -7218-0410-832d-
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heister [Thu, 30 May 2013 21:47:19 +0000 (21:47 +0000)]
revert accidental change from r29647
git-svn-id: https://svn.dealii.org/trunk@29673
0785d39b -7218-0410-832d-
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heister [Thu, 30 May 2013 21:41:20 +0000 (21:41 +0000)]
revert accidental change from r29647
git-svn-id: https://svn.dealii.org/trunk@29672
0785d39b -7218-0410-832d-
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heister [Thu, 30 May 2013 00:38:37 +0000 (00:38 +0000)]
update test output
git-svn-id: https://svn.dealii.org/trunk@29668
0785d39b -7218-0410-832d-
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heister [Thu, 30 May 2013 00:36:51 +0000 (00:36 +0000)]
fix test and output
git-svn-id: https://svn.dealii.org/trunk@29667
0785d39b -7218-0410-832d-
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heister [Thu, 30 May 2013 00:35:40 +0000 (00:35 +0000)]
add MPILogInitAll helper class for mpi tests
git-svn-id: https://svn.dealii.org/trunk@29666
0785d39b -7218-0410-832d-
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kronbichler [Wed, 29 May 2013 08:09:34 +0000 (08:09 +0000)]
Need to call update_ghost_values with the current scheme of distribute
git-svn-id: https://svn.dealii.org/trunk@29664
0785d39b -7218-0410-832d-
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bangerth [Tue, 28 May 2013 20:00:27 +0000 (20:00 +0000)]
Revert changes to ConstraintMatrix::distribute, see bug #51.
git-svn-id: https://svn.dealii.org/trunk@29662
0785d39b -7218-0410-832d-
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kanschat [Tue, 28 May 2013 16:05:02 +0000 (16:05 +0000)]
filter out trilinos and petsc if not configured
git-svn-id: https://svn.dealii.org/trunk@29661
0785d39b -7218-0410-832d-
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kronbichler [Tue, 28 May 2013 15:57:13 +0000 (15:57 +0000)]
Adjust test case for new scheme for constraints.
git-svn-id: https://svn.dealii.org/trunk@29660
0785d39b -7218-0410-832d-
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bangerth [Tue, 28 May 2013 14:47:25 +0000 (14:47 +0000)]
Minor edits.
git-svn-id: https://svn.dealii.org/trunk@29659
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kronbichler [Tue, 28 May 2013 14:06:58 +0000 (14:06 +0000)]
Need to build constraints between ghost cells also in 2d. Let's see if this fixes the currently failing tests.
git-svn-id: https://svn.dealii.org/trunk@29658
0785d39b -7218-0410-832d-
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kanschat [Tue, 28 May 2013 13:36:24 +0000 (13:36 +0000)]
new ouptu format
git-svn-id: https://svn.dealii.org/trunk@29657
0785d39b -7218-0410-832d-
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kronbichler [Tue, 28 May 2013 12:05:12 +0000 (12:05 +0000)]
Another minor fix.
git-svn-id: https://svn.dealii.org/trunk@29656
0785d39b -7218-0410-832d-
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kronbichler [Tue, 28 May 2013 07:05:33 +0000 (07:05 +0000)]
Zero out ghosts in parallel vector explicitly when setting the constraints to zero as they will be zeroed out anyway.
git-svn-id: https://svn.dealii.org/trunk@29655
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kronbichler [Tue, 28 May 2013 06:26:59 +0000 (06:26 +0000)]
Should not call ConstraintMatrix::distribute on vector with ghost values
git-svn-id: https://svn.dealii.org/trunk@29654
0785d39b -7218-0410-832d-
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bangerth [Tue, 28 May 2013 02:57:41 +0000 (02:57 +0000)]
Adjust output to what is presumably the correct one.
git-svn-id: https://svn.dealii.org/trunk@29653
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kanschat [Mon, 27 May 2013 22:35:54 +0000 (22:35 +0000)]
reorder levels and make output more machine readable
git-svn-id: https://svn.dealii.org/trunk@29652
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bangerth [Mon, 27 May 2013 21:47:30 +0000 (21:47 +0000)]
Minor adjustment, but this doesn't fix the problem.
git-svn-id: https://svn.dealii.org/trunk@29651
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bangerth [Mon, 27 May 2013 21:04:54 +0000 (21:04 +0000)]
Avoid some communication by improving on Timo's patch in r29631.
git-svn-id: https://svn.dealii.org/trunk@29650
0785d39b -7218-0410-832d-
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kronbichler [Mon, 27 May 2013 15:25:21 +0000 (15:25 +0000)]
Two minor improvements
git-svn-id: https://svn.dealii.org/trunk@29649
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heister [Mon, 27 May 2013 14:10:23 +0000 (14:10 +0000)]
fix mg number cache
git-svn-id: https://svn.dealii.org/trunk@29648
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 13:55:05 +0000 (13:55 +0000)]
multigrid copy_indices another try
git-svn-id: https://svn.dealii.org/trunk@29647
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 13:47:17 +0000 (13:47 +0000)]
multigrid copy_indices maybe more correct now?
git-svn-id: https://svn.dealii.org/trunk@29646
0785d39b -7218-0410-832d-
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kanschat [Mon, 27 May 2013 13:39:23 +0000 (13:39 +0000)]
test copy indices
git-svn-id: https://svn.dealii.org/trunk@29645
0785d39b -7218-0410-832d-
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kanschat [Mon, 27 May 2013 13:39:17 +0000 (13:39 +0000)]
reintroduce constraints and add debug function
git-svn-id: https://svn.dealii.org/trunk@29644
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 12:46:51 +0000 (12:46 +0000)]
fill new copy_indices even more correct
git-svn-id: https://svn.dealii.org/trunk@29643
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 12:40:22 +0000 (12:40 +0000)]
fill new copy_indices correctly
git-svn-id: https://svn.dealii.org/trunk@29642
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 12:35:42 +0000 (12:35 +0000)]
step-50: parellel dataout, use IndexSet for ConstraintMatrix
git-svn-id: https://svn.dealii.org/trunk@29641
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 12:34:19 +0000 (12:34 +0000)]
fill new mg copy_indices variables
git-svn-id: https://svn.dealii.org/trunk@29640
0785d39b -7218-0410-832d-
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kanschat [Mon, 27 May 2013 12:21:01 +0000 (12:21 +0000)]
fix distributed functionality in copy to/from mg
git-svn-id: https://svn.dealii.org/trunk@29639
0785d39b -7218-0410-832d-
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kronbichler [Mon, 27 May 2013 12:10:02 +0000 (12:10 +0000)]
Implement TrilinosWrappers::VectorBase::locally_owned_elements for vectors with non-contiguous local range. Fix set_zero for parallel::distributed::Vector
git-svn-id: https://svn.dealii.org/trunk@29638
0785d39b -7218-0410-832d-
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kanschat [Mon, 27 May 2013 11:51:02 +0000 (11:51 +0000)]
two new fields
git-svn-id: https://svn.dealii.org/trunk@29637
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 09:28:30 +0000 (09:28 +0000)]
update test
git-svn-id: https://svn.dealii.org/trunk@29636
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 09:27:45 +0000 (09:27 +0000)]
adding test that shows broken ConstraintMatrix::distribute()
git-svn-id: https://svn.dealii.org/trunk@29635
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 09:24:38 +0000 (09:24 +0000)]
git-svn-id: https://svn.dealii.org/trunk@29634
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 08:12:15 +0000 (08:12 +0000)]
step-50: do not copy coarse matrix
git-svn-id: https://svn.dealii.org/trunk@29633
0785d39b -7218-0410-832d-
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kanschat [Mon, 27 May 2013 07:55:56 +0000 (07:55 +0000)]
change path and add MPI
git-svn-id: https://svn.dealii.org/trunk@29632
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 07:55:52 +0000 (07:55 +0000)]
fix deadlock in ConstraintMatrix
git-svn-id: https://svn.dealii.org/trunk@29631
0785d39b -7218-0410-832d-
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heister [Mon, 27 May 2013 07:55:19 +0000 (07:55 +0000)]
fix compress() handling
git-svn-id: https://svn.dealii.org/trunk@29630
0785d39b -7218-0410-832d-
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heister [Sun, 26 May 2013 22:14:22 +0000 (22:14 +0000)]
That test looked pretty broken to me.
git-svn-id: https://svn.dealii.org/trunk@29629
0785d39b -7218-0410-832d-
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heister [Sun, 26 May 2013 22:12:24 +0000 (22:12 +0000)]
document bug in ConstraintMatrix::distribute()
git-svn-id: https://svn.dealii.org/trunk@29628
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 22:09:44 +0000 (22:09 +0000)]
output for one processor
git-svn-id: https://svn.dealii.org/trunk@29627
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 22:08:33 +0000 (22:08 +0000)]
add distribution for Kelly
git-svn-id: https://svn.dealii.org/trunk@29626
0785d39b -7218-0410-832d-
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heister [Sun, 26 May 2013 22:08:24 +0000 (22:08 +0000)]
this test had a wrong output file
git-svn-id: https://svn.dealii.org/trunk@29625
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 22:06:57 +0000 (22:06 +0000)]
Initialize test for adaptive refinement, even if it still fails
git-svn-id: https://svn.dealii.org/trunk@29624
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 22:04:50 +0000 (22:04 +0000)]
add data exchange to KElly
git-svn-id: https://svn.dealii.org/trunk@29623
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 21:41:02 +0000 (21:41 +0000)]
multigrid test for uniform meshes and sufficiently many cells
git-svn-id: https://svn.dealii.org/trunk@29622
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 21:38:09 +0000 (21:38 +0000)]
Macro for opening MPI output files automatically
git-svn-id: https://svn.dealii.org/trunk@29621
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 21:18:36 +0000 (21:18 +0000)]
more global levels
git-svn-id: https://svn.dealii.org/trunk@29620
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heister [Sun, 26 May 2013 21:12:57 +0000 (21:12 +0000)]
parallel multigrid, continued
git-svn-id: https://svn.dealii.org/trunk@29619
0785d39b -7218-0410-832d-
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bangerth [Sun, 26 May 2013 17:33:49 +0000 (17:33 +0000)]
Use correct mail address.
git-svn-id: https://svn.dealii.org/trunk@29618
0785d39b -7218-0410-832d-
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bangerth [Sun, 26 May 2013 17:30:28 +0000 (17:30 +0000)]
Allow the mail program to be overwritten by the environment.
git-svn-id: https://svn.dealii.org/trunk@29617
0785d39b -7218-0410-832d-
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kronbichler [Sun, 26 May 2013 17:03:17 +0000 (17:03 +0000)]
Implement better swap function.
git-svn-id: https://svn.dealii.org/trunk@29616
0785d39b -7218-0410-832d-
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heister [Sun, 26 May 2013 16:33:03 +0000 (16:33 +0000)]
multigrid: handle levels!=n_global_levels
git-svn-id: https://svn.dealii.org/trunk@29615
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 16:30:49 +0000 (16:30 +0000)]
also fix DoFHandler::begin(level)
git-svn-id: https://svn.dealii.org/trunk@29614
0785d39b -7218-0410-832d-
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heister [Sun, 26 May 2013 16:19:35 +0000 (16:19 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@29613
0785d39b -7218-0410-832d-
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kanschat [Sun, 26 May 2013 15:59:07 +0000 (15:59 +0000)]
fix output
git-svn-id: https://svn.dealii.org/trunk@29612
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kanschat [Sun, 26 May 2013 15:44:10 +0000 (15:44 +0000)]
Do not throw assertions from Triangulation::begin(level) and Triangulation::end(level) if level is in the global level range
git-svn-id: https://svn.dealii.org/trunk@29611
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heister [Sun, 26 May 2013 15:42:59 +0000 (15:42 +0000)]
step-50: add compress calls, fix output
git-svn-id: https://svn.dealii.org/trunk@29610
0785d39b -7218-0410-832d-
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bangerth [Sun, 26 May 2013 15:41:12 +0000 (15:41 +0000)]
Fix an oversight (thanks to Alexander Grayver for pointing it out).
git-svn-id: https://svn.dealii.org/trunk@29609
0785d39b -7218-0410-832d-
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heister [Sun, 26 May 2013 15:40:11 +0000 (15:40 +0000)]
add a missing compress in multigrid
git-svn-id: https://svn.dealii.org/trunk@29608
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bangerth [Sun, 26 May 2013 15:16:12 +0000 (15:16 +0000)]
Add an argument to IndexSet::add_indices. Use this to make a function in BlockVector significantly faster.
git-svn-id: https://svn.dealii.org/trunk@29607
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heister [Sun, 26 May 2013 14:00:14 +0000 (14:00 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@29606
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heister [Sun, 26 May 2013 13:59:55 +0000 (13:59 +0000)]
add failing test
git-svn-id: https://svn.dealii.org/trunk@29605
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heister [Sun, 26 May 2013 13:02:06 +0000 (13:02 +0000)]
multigrid in parallel: only track own dofs
git-svn-id: https://svn.dealii.org/trunk@29604
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kanschat [Sun, 26 May 2013 09:37:10 +0000 (09:37 +0000)]
simplify logic
git-svn-id: https://svn.dealii.org/trunk@29603
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kanschat [Sat, 25 May 2013 21:13:30 +0000 (21:13 +0000)]
add dummy compress function to SparseMatrix
git-svn-id: https://svn.dealii.org/trunk@29602
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kanschat [Sat, 25 May 2013 20:58:04 +0000 (20:58 +0000)]
do elimination of boundary columns locally
git-svn-id: https://svn.dealii.org/trunk@29601
0785d39b -7218-0410-832d-
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kanschat [Sat, 25 May 2013 18:03:07 +0000 (18:03 +0000)]
fix output
git-svn-id: https://svn.dealii.org/trunk@29599
0785d39b -7218-0410-832d-
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kanschat [Sat, 25 May 2013 17:59:51 +0000 (17:59 +0000)]
matrix test with boundary conditions
git-svn-id: https://svn.dealii.org/trunk@29598
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heister [Sat, 25 May 2013 15:24:31 +0000 (15:24 +0000)]
step-50: better matrix construction
git-svn-id: https://svn.dealii.org/trunk@29597
0785d39b -7218-0410-832d-
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kanschat [Sat, 25 May 2013 15:22:20 +0000 (15:22 +0000)]
transfer prebuilt with hanging nodes
git-svn-id: https://svn.dealii.org/trunk@29596
0785d39b -7218-0410-832d-
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bangerth [Sat, 25 May 2013 13:02:30 +0000 (13:02 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@29595
0785d39b -7218-0410-832d-
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bangerth [Sat, 25 May 2013 12:46:37 +0000 (12:46 +0000)]
New tests.
git-svn-id: https://svn.dealii.org/trunk@29594
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bangerth [Sat, 25 May 2013 12:29:14 +0000 (12:29 +0000)]
Unify the various implementations of ConstraintMatrix::distribute using the new scheme. This includes making it now also work for objects of type PETScWrappers::MPI::BlockVector. Compared to the previous implementation, it now also works if constraints have inhomogeneities.
git-svn-id: https://svn.dealii.org/trunk@29593
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bangerth [Sat, 25 May 2013 12:23:00 +0000 (12:23 +0000)]
Fix IndexSet::operator== which we have, mysteriously, gotten wrong...
git-svn-id: https://svn.dealii.org/trunk@29592
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kanschat [Sat, 25 May 2013 08:58:22 +0000 (08:58 +0000)]
fix new test
git-svn-id: https://svn.dealii.org/trunk@29591
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heister [Sat, 25 May 2013 08:53:53 +0000 (08:53 +0000)]
remove misleading comment
git-svn-id: https://svn.dealii.org/trunk@29590
0785d39b -7218-0410-832d-
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kanschat [Sat, 25 May 2013 08:50:25 +0000 (08:50 +0000)]
debug output for MGTransferPrebuilt
remove deprecated function call in mg_block_smoother.h
git-svn-id: https://svn.dealii.org/trunk@29589
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heister [Sat, 25 May 2013 08:49:29 +0000 (08:49 +0000)]
cleanup test
git-svn-id: https://svn.dealii.org/trunk@29588
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heister [Sat, 25 May 2013 08:48:01 +0000 (08:48 +0000)]
and some more MG bugs from yesterday
git-svn-id: https://svn.dealii.org/trunk@29587
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heister [Sat, 25 May 2013 08:24:07 +0000 (08:24 +0000)]
add failing test
git-svn-id: https://svn.dealii.org/trunk@29586
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kronbichler [Sat, 25 May 2013 08:23:31 +0000 (08:23 +0000)]
Fix a stupid deadlock.
git-svn-id: https://svn.dealii.org/trunk@29585
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heister [Sat, 25 May 2013 08:22:36 +0000 (08:22 +0000)]
fix stuff I broke yesterday
git-svn-id: https://svn.dealii.org/trunk@29584
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kanschat [Sat, 25 May 2013 08:12:39 +0000 (08:12 +0000)]
remove deprecated warninngs and prepare a new test
still waiting for boundary lists to be fixed
git-svn-id: https://svn.dealii.org/trunk@29583
0785d39b -7218-0410-832d-
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kronbichler [Sat, 25 May 2013 07:49:44 +0000 (07:49 +0000)]
Use locks only when modifying entries, not whenever accessing through get_prolongation_matrix
git-svn-id: https://svn.dealii.org/trunk@29582
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kanschat [Sat, 25 May 2013 07:27:26 +0000 (07:27 +0000)]
prepare transfer for Trilinos matrices
git-svn-id: https://svn.dealii.org/trunk@29581
0785d39b -7218-0410-832d-
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bangerth [Fri, 24 May 2013 19:19:35 +0000 (19:19 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@29580
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bangerth [Fri, 24 May 2013 19:18:52 +0000 (19:18 +0000)]
Can't call vec.l1_norm() if not on all processors.
git-svn-id: https://svn.dealii.org/trunk@29579
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bangerth [Fri, 24 May 2013 19:02:27 +0000 (19:02 +0000)]
Add locally_owned_elements() to all vector classes.
git-svn-id: https://svn.dealii.org/trunk@29578
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bangerth [Fri, 24 May 2013 18:59:19 +0000 (18:59 +0000)]
Add complete_index_set().
git-svn-id: https://svn.dealii.org/trunk@29577
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kronbichler [Fri, 24 May 2013 18:43:56 +0000 (18:43 +0000)]
Fix locks.
git-svn-id: https://svn.dealii.org/trunk@29576
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kanschat [Fri, 24 May 2013 16:22:37 +0000 (16:22 +0000)]
output all levels
allow for negative subdomains
simplify some redundant expressions
git-svn-id: https://svn.dealii.org/trunk@29575
0785d39b -7218-0410-832d-
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