https://gitweb.dealii.org/ - dealii-svn.git/log

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kanschat [Sun, 26 May 2013 21:18:36 +0000 (21:18 +0000)]

more global levels

git-svn-id: https://svn.dealii.org/trunk@29620 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 21:12:57 +0000 (21:12 +0000)]

parallel multigrid, continued

git-svn-id: https://svn.dealii.org/trunk@29619 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 May 2013 17:33:49 +0000 (17:33 +0000)]

Use correct mail address.

git-svn-id: https://svn.dealii.org/trunk@29618 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 May 2013 17:30:28 +0000 (17:30 +0000)]

Allow the mail program to be overwritten by the environment.

git-svn-id: https://svn.dealii.org/trunk@29617 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 26 May 2013 17:03:17 +0000 (17:03 +0000)]

Implement better swap function.

git-svn-id: https://svn.dealii.org/trunk@29616 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 16:33:03 +0000 (16:33 +0000)]

multigrid: handle levels!=n_global_levels

git-svn-id: https://svn.dealii.org/trunk@29615 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 26 May 2013 16:30:49 +0000 (16:30 +0000)]

also fix DoFHandler::begin(level)

git-svn-id: https://svn.dealii.org/trunk@29614 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 16:19:35 +0000 (16:19 +0000)]

fix test output

git-svn-id: https://svn.dealii.org/trunk@29613 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 26 May 2013 15:59:07 +0000 (15:59 +0000)]

fix output

git-svn-id: https://svn.dealii.org/trunk@29612 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 26 May 2013 15:44:10 +0000 (15:44 +0000)]

Do not throw assertions from Triangulation::begin(level) and Triangulation::end(level) if level is in the global level range

git-svn-id: https://svn.dealii.org/trunk@29611 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 15:42:59 +0000 (15:42 +0000)]

step-50: add compress calls, fix output

git-svn-id: https://svn.dealii.org/trunk@29610 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 May 2013 15:41:12 +0000 (15:41 +0000)]

Fix an oversight (thanks to Alexander Grayver for pointing it out).

git-svn-id: https://svn.dealii.org/trunk@29609 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 15:40:11 +0000 (15:40 +0000)]

add a missing compress in multigrid

git-svn-id: https://svn.dealii.org/trunk@29608 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 May 2013 15:16:12 +0000 (15:16 +0000)]

Add an argument to IndexSet::add_indices. Use this to make a function in BlockVector significantly faster.

git-svn-id: https://svn.dealii.org/trunk@29607 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 14:00:14 +0000 (14:00 +0000)]

fix test output

git-svn-id: https://svn.dealii.org/trunk@29606 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 13:59:55 +0000 (13:59 +0000)]

add failing test

git-svn-id: https://svn.dealii.org/trunk@29605 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 May 2013 13:02:06 +0000 (13:02 +0000)]

multigrid in parallel: only track own dofs

git-svn-id: https://svn.dealii.org/trunk@29604 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 26 May 2013 09:37:10 +0000 (09:37 +0000)]

simplify logic

git-svn-id: https://svn.dealii.org/trunk@29603 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 21:13:30 +0000 (21:13 +0000)]

add dummy compress function to SparseMatrix

git-svn-id: https://svn.dealii.org/trunk@29602 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 20:58:04 +0000 (20:58 +0000)]

do elimination of boundary columns locally

git-svn-id: https://svn.dealii.org/trunk@29601 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 18:03:07 +0000 (18:03 +0000)]

fix output

git-svn-id: https://svn.dealii.org/trunk@29599 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 17:59:51 +0000 (17:59 +0000)]

matrix test with boundary conditions

git-svn-id: https://svn.dealii.org/trunk@29598 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 25 May 2013 15:24:31 +0000 (15:24 +0000)]

step-50: better matrix construction

git-svn-id: https://svn.dealii.org/trunk@29597 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 15:22:20 +0000 (15:22 +0000)]

transfer prebuilt with hanging nodes

git-svn-id: https://svn.dealii.org/trunk@29596 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 25 May 2013 13:02:30 +0000 (13:02 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@29595 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 25 May 2013 12:46:37 +0000 (12:46 +0000)]

New tests.

git-svn-id: https://svn.dealii.org/trunk@29594 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 25 May 2013 12:29:14 +0000 (12:29 +0000)]

Unify the various implementations of ConstraintMatrix::distribute using the new scheme. This includes making it now also work for objects of type PETScWrappers::MPI::BlockVector. Compared to the previous implementation, it now also works if constraints have inhomogeneities.

git-svn-id: https://svn.dealii.org/trunk@29593 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 25 May 2013 12:23:00 +0000 (12:23 +0000)]

Fix IndexSet::operator== which we have, mysteriously, gotten wrong...

git-svn-id: https://svn.dealii.org/trunk@29592 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 08:58:22 +0000 (08:58 +0000)]

fix new test

git-svn-id: https://svn.dealii.org/trunk@29591 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 25 May 2013 08:53:53 +0000 (08:53 +0000)]

remove misleading comment

git-svn-id: https://svn.dealii.org/trunk@29590 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 08:50:25 +0000 (08:50 +0000)]

debug output for MGTransferPrebuilt
remove deprecated function call in mg_block_smoother.h

git-svn-id: https://svn.dealii.org/trunk@29589 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 25 May 2013 08:49:29 +0000 (08:49 +0000)]

cleanup test

git-svn-id: https://svn.dealii.org/trunk@29588 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 25 May 2013 08:48:01 +0000 (08:48 +0000)]

and some more MG bugs from yesterday

git-svn-id: https://svn.dealii.org/trunk@29587 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 25 May 2013 08:24:07 +0000 (08:24 +0000)]

add failing test

git-svn-id: https://svn.dealii.org/trunk@29586 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 25 May 2013 08:23:31 +0000 (08:23 +0000)]

Fix a stupid deadlock.

git-svn-id: https://svn.dealii.org/trunk@29585 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sat, 25 May 2013 08:22:36 +0000 (08:22 +0000)]

fix stuff I broke yesterday

git-svn-id: https://svn.dealii.org/trunk@29584 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 08:12:39 +0000 (08:12 +0000)]

remove deprecated warninngs and prepare a new test
still waiting for boundary lists to be fixed

git-svn-id: https://svn.dealii.org/trunk@29583 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 25 May 2013 07:49:44 +0000 (07:49 +0000)]

Use locks only when modifying entries, not whenever accessing through get_prolongation_matrix

git-svn-id: https://svn.dealii.org/trunk@29582 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 25 May 2013 07:27:26 +0000 (07:27 +0000)]

prepare transfer for Trilinos matrices

git-svn-id: https://svn.dealii.org/trunk@29581 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 May 2013 19:19:35 +0000 (19:19 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@29580 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 May 2013 19:18:52 +0000 (19:18 +0000)]

Can't call vec.l1_norm() if not on all processors.

git-svn-id: https://svn.dealii.org/trunk@29579 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 May 2013 19:02:27 +0000 (19:02 +0000)]

Add locally_owned_elements() to all vector classes.

git-svn-id: https://svn.dealii.org/trunk@29578 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 May 2013 18:59:19 +0000 (18:59 +0000)]

Add complete_index_set().

git-svn-id: https://svn.dealii.org/trunk@29577 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 24 May 2013 18:43:56 +0000 (18:43 +0000)]

Fix locks.

git-svn-id: https://svn.dealii.org/trunk@29576 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 24 May 2013 16:22:37 +0000 (16:22 +0000)]

output all levels
allow for negative subdomains
simplify some redundant expressions

git-svn-id: https://svn.dealii.org/trunk@29575 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 16:11:47 +0000 (16:11 +0000)]

ignore non local cells in mg*

git-svn-id: https://svn.dealii.org/trunk@29574 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 24 May 2013 15:46:18 +0000 (15:46 +0000)]

Avoid warning about possibly uninitialized variables.

git-svn-id: https://svn.dealii.org/trunk@29573 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 14:19:53 +0000 (14:19 +0000)]

remove debug output

git-svn-id: https://svn.dealii.org/trunk@29572 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 14:02:55 +0000 (14:02 +0000)]

fix bug in distribute mg dofs in parallel

git-svn-id: https://svn.dealii.org/trunk@29571 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 13:55:20 +0000 (13:55 +0000)]

step-50: add gridout

git-svn-id: https://svn.dealii.org/trunk@29570 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 24 May 2013 13:15:12 +0000 (13:15 +0000)]

Adjust output.

git-svn-id: https://svn.dealii.org/trunk@29569 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 13:11:25 +0000 (13:11 +0000)]

simplify test

git-svn-id: https://svn.dealii.org/trunk@29568 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 12:58:47 +0000 (12:58 +0000)]

update test

git-svn-id: https://svn.dealii.org/trunk@29567 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 12:56:20 +0000 (12:56 +0000)]

add broken test

git-svn-id: https://svn.dealii.org/trunk@29566 0785d39b-7218-0410-832d-ea1e28bc413d

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koecher [Fri, 24 May 2013 12:52:52 +0000 (12:52 +0000)]

added some (void)i to avoid warnings in optimized mode to tria_accessor.templates.h

git-svn-id: https://svn.dealii.org/trunk@29565 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 12:20:58 +0000 (12:20 +0000)]

give multigrid hint in step-50

git-svn-id: https://svn.dealii.org/trunk@29564 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 12:18:17 +0000 (12:18 +0000)]

add comment

git-svn-id: https://svn.dealii.org/trunk@29563 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 24 May 2013 12:15:12 +0000 (12:15 +0000)]

add cmake stuff for step-50

git-svn-id: https://svn.dealii.org/trunk@29562 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 24 May 2013 09:53:12 +0000 (09:53 +0000)]

Initialize restriction and prolongation matrix in FESystem and FE_Q only upon request. This significantly reduces memory requirements for higher order elements as most of these matrices are never needed, e.g. anisotropic ones without anisotropic refinement.

git-svn-id: https://svn.dealii.org/trunk@29561 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 May 2013 05:04:17 +0000 (05:04 +0000)]

Provide Vector::supports_distributed_data for all vector classes.

git-svn-id: https://svn.dealii.org/trunk@29560 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 May 2013 04:30:55 +0000 (04:30 +0000)]

Move exception declaration out of function-local scope to a globally visible scope so that the class has external linkage as required by the standard.

git-svn-id: https://svn.dealii.org/trunk@29559 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 23 May 2013 19:19:51 +0000 (19:19 +0000)]

Implement ConstraintMatrix::distribute() in a different way. Adjust testcase.

git-svn-id: https://svn.dealii.org/trunk@29558 0785d39b-7218-0410-832d-ea1e28bc413d

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steigemann [Thu, 23 May 2013 10:44:49 +0000 (10:44 +0000)]

small fix in fe_tools.cc

git-svn-id: https://svn.dealii.org/trunk@29557 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 23 May 2013 09:36:13 +0000 (09:36 +0000)]

Mention change.

git-svn-id: https://svn.dealii.org/trunk@29556 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 23 May 2013 09:36:03 +0000 (09:36 +0000)]

Patch for FETools::back_interpolate for parallel::distributed::Vector by Martin Steigemann.

git-svn-id: https://svn.dealii.org/trunk@29555 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 22 May 2013 22:34:49 +0000 (22:34 +0000)]

One more.

git-svn-id: https://svn.dealii.org/trunk@29554 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 22 May 2013 20:36:34 +0000 (20:36 +0000)]

CMake: Rename configure_umfpack.cmake to configura_1_umfpack.cmake so that
it gets processed before configure_petsc.cmake

git-svn-id: https://svn.dealii.org/trunk@29553 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 22 May 2013 20:08:44 +0000 (20:08 +0000)]

Adjust output.

git-svn-id: https://svn.dealii.org/trunk@29552 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 22 May 2013 14:57:12 +0000 (14:57 +0000)]

Make compile without C++11.

git-svn-id: https://svn.dealii.org/trunk@29551 0785d39b-7218-0410-832d-ea1e28bc413d

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christian.wuelker [Wed, 22 May 2013 13:36:35 +0000 (13:36 +0000)]

Output adjusted to new version of GridOut::write_svg

git-svn-id: https://svn.dealii.org/trunk@29550 0785d39b-7218-0410-832d-ea1e28bc413d

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christian.wuelker [Wed, 22 May 2013 13:32:48 +0000 (13:32 +0000)]

added DataOutBase::write_svg.
GridOut::write_svg now provides a perspective view

git-svn-id: https://svn.dealii.org/trunk@29549 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 22 May 2013 06:27:29 +0000 (06:27 +0000)]

Improve documentation.

git-svn-id: https://svn.dealii.org/trunk@29548 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 22 May 2013 06:02:41 +0000 (06:02 +0000)]

Make compile without MPI.

git-svn-id: https://svn.dealii.org/trunk@29547 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 22 May 2013 05:49:37 +0000 (05:49 +0000)]

Adjust number of iterations due to new computation of eigenvalues in PreconditionChebyshev.

git-svn-id: https://svn.dealii.org/trunk@29546 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 22 May 2013 05:35:32 +0000 (05:35 +0000)]

Extend test to negative entries.

git-svn-id: https://svn.dealii.org/trunk@29545 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 22 May 2013 05:32:19 +0000 (05:32 +0000)]

Fix comparison with negative entries.

git-svn-id: https://svn.dealii.org/trunk@29544 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 22 May 2013 05:27:30 +0000 (05:27 +0000)]

Remove this file since it's unused, see bug report 57 at http://code.google.com/p/dealii/issues/detail?id=57.

git-svn-id: https://svn.dealii.org/trunk@29543 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 21 May 2013 16:47:31 +0000 (16:47 +0000)]

Improve inner products in parallel vector: Use only one MPI_Allreduce instead of n_blocks() many.

git-svn-id: https://svn.dealii.org/trunk@29542 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 21 May 2013 14:39:21 +0000 (14:39 +0000)]

Rename test to reflect the function it tests.

git-svn-id: https://svn.dealii.org/trunk@29541 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 21 May 2013 14:37:42 +0000 (14:37 +0000)]

Adjust output for change in r29539

git-svn-id: https://svn.dealii.org/trunk@29540 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 21 May 2013 14:30:26 +0000 (14:30 +0000)]

Use better max coarse size for Trilinos AMG preconditioner. The default (128) is way too small; a direct solver with not more than 2000 entries is very quick indeed.

git-svn-id: https://svn.dealii.org/trunk@29539 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 21 May 2013 14:29:36 +0000 (14:29 +0000)]

Use deal.II CG solver for initializing PreconditionChebyshev instead of implementing it again. Hook onto deallog for getting the eigenvalue estimates.

git-svn-id: https://svn.dealii.org/trunk@29538 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 21 May 2013 14:12:41 +0000 (14:12 +0000)]

Fix include files.

git-svn-id: https://svn.dealii.org/trunk@29537 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 21 May 2013 13:53:26 +0000 (13:53 +0000)]

Fix a few typos.

git-svn-id: https://svn.dealii.org/trunk@29536 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 21 May 2013 13:52:37 +0000 (13:52 +0000)]

Augment text.

git-svn-id: https://svn.dealii.org/trunk@29535 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 21 May 2013 13:34:04 +0000 (13:34 +0000)]

Fix bug in parallel::distributed::Vector::compress(VectorOperation::insert) pointed out by Martin Steigemann.

git-svn-id: https://svn.dealii.org/trunk@29534 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 21 May 2013 13:16:35 +0000 (13:16 +0000)]

Short circuit a test to make dof_tools_21 pass again.

git-svn-id: https://svn.dealii.org/trunk@29533 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 21 May 2013 12:30:22 +0000 (12:30 +0000)]

Add a test.

git-svn-id: https://svn.dealii.org/trunk@29532 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 21 May 2013 04:18:42 +0000 (04:18 +0000)]

Doh -- I need to learn to place my parentheses...

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bangerth [Tue, 21 May 2013 03:52:02 +0000 (03:52 +0000)]

Add a test. This doesn't currently work, but I'd like to continue debugging on a system where this is faster...

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bangerth [Mon, 20 May 2013 22:13:54 +0000 (22:13 +0000)]

Fix completely bogus way of including header files.

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bangerth [Mon, 20 May 2013 21:29:14 +0000 (21:29 +0000)]

Add an assertion.

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bangerth [Mon, 20 May 2013 16:08:45 +0000 (16:08 +0000)]

Add missing include file.

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maier [Mon, 20 May 2013 16:05:43 +0000 (16:05 +0000)]

Fixup two comments ;-)

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bangerth [Mon, 20 May 2013 14:08:26 +0000 (14:08 +0000)]

Make make_periodicity_constraints work with locally refined meshes as well.

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bangerth [Sat, 18 May 2013 12:49:17 +0000 (12:49 +0000)]

New test.

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bangerth [Fri, 17 May 2013 21:08:29 +0000 (21:08 +0000)]

Fix a couple of typos.

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bangerth [Fri, 17 May 2013 17:37:25 +0000 (17:37 +0000)]

More progress on periodic boundary conditions.

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bangerth [Thu, 16 May 2013 22:10:32 +0000 (22:10 +0000)]

Refactor a bit, in preparation to dealing with periodic faces not on
the same refinement level.

git-svn-id: https://svn.dealii.org/trunk@29521 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 16 May 2013 21:08:43 +0000 (21:08 +0000)]

Add standard file header.

git-svn-id: https://svn.dealii.org/trunk@29520 0785d39b-7218-0410-832d-ea1e28bc413d

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