]>
https://gitweb.dealii.org/ - dealii.git/log
Matthias Maier [Wed, 21 Feb 2024 08:02:51 +0000 (02:02 -0600)]
Update license headers: ./doc
Matthias Maier [Wed, 21 Feb 2024 07:42:51 +0000 (01:42 -0600)]
Update license headers: ./tests and ./examples
Matthias Maier [Wed, 21 Feb 2024 07:31:33 +0000 (01:31 -0600)]
Update license headers: ./cmake
Matthias Maier [Wed, 21 Feb 2024 07:27:29 +0000 (01:27 -0600)]
Update license headers: .source
Matthias Maier [Wed, 21 Feb 2024 07:24:11 +0000 (01:24 -0600)]
Update license headers: ./include
Matthias Maier [Wed, 21 Feb 2024 06:54:46 +0000 (00:54 -0600)]
Update copyright years
Wolfgang Bangerth [Wed, 21 Feb 2024 15:55:19 +0000 (08:55 -0700)]
Merge pull request #16687 from masterleinad/fix_boundary_manifold_step_54_docs
Fix OpenCASCADE::*Boundary references to OpenCASCADE::*Manifold in step-54 docs
Daniel Arndt [Wed, 21 Feb 2024 13:54:05 +0000 (08:54 -0500)]
Fix OpenCASCADE::*Boundary references to OpenCASCADE::*Manifold in step-54 docs
Matthias Maier [Wed, 21 Feb 2024 08:18:29 +0000 (08:18 +0000)]
Merge pull request #16685 from tamiko/relicensing-preliminaries-2
Relicensing: update .mailmap
Martin Kronbichler [Wed, 21 Feb 2024 07:54:41 +0000 (08:54 +0100)]
Merge pull request #16659 from marcfehling/trilinos_readme
Update Trilinos readme.
Martin Kronbichler [Wed, 21 Feb 2024 07:53:21 +0000 (08:53 +0100)]
Merge pull request #16680 from bangerth/doc
Minor updates to the documentation of a few functions.
Martin Kronbichler [Wed, 21 Feb 2024 07:53:02 +0000 (08:53 +0100)]
Merge pull request #16675 from gassmoeller/writable_reference_particle_location
Add function to retrieve a writable reference to particle locations
Matthias Maier [Wed, 21 Feb 2024 04:55:59 +0000 (22:55 -0600)]
Mailmap: add missing entries
Matthias Maier [Wed, 21 Feb 2024 03:36:17 +0000 (21:36 -0600)]
Mailmap: sort and compactify
Marc Fehling [Wed, 21 Feb 2024 02:21:58 +0000 (19:21 -0700)]
Merge pull request #16682 from masterleinad/ci_matrix_free_kokkos
GitHub CI: Also compile matrix_free_kokkos tests in CUDA CI
Marc Fehling [Wed, 21 Feb 2024 01:22:40 +0000 (18:22 -0700)]
Merge pull request #16681 from bangerth/efficiency
Minor efficiency improvement.
Marc Fehling [Wed, 21 Feb 2024 01:18:57 +0000 (18:18 -0700)]
Merge pull request #16683 from masterleinad/tpetra_complex_solver_direct
Tpetra: Fix instantiations for SolverDirect* with complex number types
Daniel Arndt [Tue, 20 Feb 2024 20:28:13 +0000 (15:28 -0500)]
GitHub CI: Also compile matrix_free_kokkos tests in CUDA CI
Daniel Arndt [Tue, 20 Feb 2024 22:07:48 +0000 (17:07 -0500)]
Tpetra: Fix instantiations for SolverDirect* with complex number types
Rene Gassmoeller [Tue, 20 Feb 2024 18:46:50 +0000 (13:46 -0500)]
Add test
Rene Gassmoeller [Tue, 20 Feb 2024 18:34:02 +0000 (13:34 -0500)]
Make indent
Rene Gassmoeller [Tue, 20 Feb 2024 08:00:15 +0000 (03:00 -0500)]
Modify usage and include in tests
Wolfgang Bangerth [Tue, 20 Feb 2024 17:53:40 +0000 (10:53 -0700)]
Minor efficiency improvement.
Wolfgang Bangerth [Tue, 20 Feb 2024 17:47:43 +0000 (10:47 -0700)]
Merge pull request #16679 from masterleinad/tpetra_fix_complex
Tpetra: Fix compiling with complex values
Wolfgang Bangerth [Tue, 20 Feb 2024 17:46:42 +0000 (10:46 -0700)]
Merge pull request #16676 from masterleinad/tpetra_clear_row
Tpetra: Add SparseMatrix::clear_row[s]
Wolfgang Bangerth [Tue, 20 Feb 2024 17:00:17 +0000 (10:00 -0700)]
Minor updates to the documentation of a few functions.
Daniel Arndt [Tue, 20 Feb 2024 17:04:55 +0000 (12:04 -0500)]
Merge pull request #16674 from tamiko/fix_cmake_optimized_debug_keywords
CMake: honor `optimized`,`debug`, and `general` keywords in `LIBRARIES` and `TARGETS`
Daniel Arndt [Tue, 20 Feb 2024 16:49:53 +0000 (11:49 -0500)]
Merge pull request #16670 from bangerth/size-type
Use size_type as return type of SparseMatrix::m().
Daniel Arndt [Tue, 20 Feb 2024 15:48:18 +0000 (10:48 -0500)]
Merge pull request #16677 from bangerth/t-8
Add Tpetra SparseMatrix::matrix_scalar_product() and matrix_norm_square().
Daniel Arndt [Tue, 20 Feb 2024 14:30:40 +0000 (09:30 -0500)]
Fix compiling clear_rows with newer Trilinos versions
Daniel Arndt [Tue, 20 Feb 2024 14:29:16 +0000 (09:29 -0500)]
Let clear_rows take an ArrayView argument
Daniel Arndt [Tue, 20 Feb 2024 14:30:15 +0000 (09:30 -0500)]
Tpetra: Fix compiling with complex values
Wolfgang Bangerth [Mon, 19 Feb 2024 23:19:15 +0000 (16:19 -0700)]
Merge pull request #16673 from mschreter/fix_flux_sparsity_FE_Nothing
Fix `make_flux_sparsity_pattern` for `FENothing`
Wolfgang Bangerth [Mon, 19 Feb 2024 23:15:59 +0000 (16:15 -0700)]
Add some missing assertions.
Wolfgang Bangerth [Mon, 19 Feb 2024 23:11:47 +0000 (16:11 -0700)]
Add tests.
Wolfgang Bangerth [Mon, 19 Feb 2024 23:10:50 +0000 (16:10 -0700)]
Add Tpetra SparseMatrix::matrix_scalar_product() and matrix_norm_square().
Daniel Arndt [Mon, 19 Feb 2024 22:10:07 +0000 (17:10 -0500)]
Tpetra: Add SparseMatrix::clear_row[s]
Rene Gassmoeller [Mon, 19 Feb 2024 21:32:30 +0000 (16:32 -0500)]
Add writeable particle location reference
Daniel Arndt [Mon, 19 Feb 2024 20:38:42 +0000 (15:38 -0500)]
Merge pull request #16672 from masterleinad/tpetra_is_non_negative
Tpetra: Implement Vector::is_non_negative
Matthias Maier [Mon, 19 Feb 2024 19:49:05 +0000 (13:49 -0600)]
CMake: update comment
Matthias Maier [Mon, 19 Feb 2024 19:46:15 +0000 (13:46 -0600)]
CMake: bugfix: honor debug,optimized,release keywords in LIBRARIES and TARGETS
Magdalena Schreter [Mon, 19 Feb 2024 18:14:25 +0000 (19:14 +0100)]
fix make_flux_sparsity_pattern for FENothing
Daniel Arndt [Mon, 19 Feb 2024 19:04:55 +0000 (14:04 -0500)]
Merge pull request #16650 from bangerth/sundials7
Add output variants for SUNDIALS 7.
Daniel Arndt [Mon, 19 Feb 2024 18:31:40 +0000 (13:31 -0500)]
Merge pull request #16457 from bangerth/assume
[C++23] When using C++23, use [[assume]] attribute.
Daniel Arndt [Mon, 19 Feb 2024 18:25:09 +0000 (13:25 -0500)]
Tpetra: Implement Vector::is_non_negative
Daniel Arndt [Mon, 19 Feb 2024 18:00:43 +0000 (13:00 -0500)]
Merge pull request #16651 from bangerth/sundials7-2
Add the remaining SUNDIALS 7 output variants.
Daniel Arndt [Mon, 19 Feb 2024 16:39:40 +0000 (11:39 -0500)]
Merge pull request #16669 from masterleinad/fix_bundled_boost_unary_function
Fix bundled boost 1.70.0 to avoid using std::unary_function
Wolfgang Bangerth [Mon, 19 Feb 2024 16:01:52 +0000 (09:01 -0700)]
Use size_type as return type of SparseMatrix::m().
Wolfgang Bangerth [Mon, 19 Feb 2024 16:00:55 +0000 (09:00 -0700)]
Merge pull request #16668 from kinnewig/tpetra_wrappers_fix
Make LA::TpetraWrappers::SparseMatrix::copy_from compatible with older Trilinos versions.
Daniel Arndt [Mon, 19 Feb 2024 14:38:05 +0000 (09:38 -0500)]
Fix bundled boost 1.70.0 to avoid using std::unary_function
Sebastian Kinnewig [Mon, 19 Feb 2024 13:14:06 +0000 (14:14 +0100)]
Make LA::TpetraWrappers::SparseMatrix::copy_from compatible with older Trilinos versions.
Wolfgang Bangerth [Mon, 19 Feb 2024 03:54:37 +0000 (20:54 -0700)]
Merge pull request #16588 from kinnewig/tpetra_block_system
Add TpetraWrapper::BlockVector and TpetraWrappers::BlockSparseMatrix
Wolfgang Bangerth [Mon, 19 Feb 2024 03:53:21 +0000 (20:53 -0700)]
Merge pull request #16660 from jpthiele/rm-vout
Remove verbose output from Tpetra direct solver
Wolfgang Bangerth [Mon, 19 Feb 2024 03:53:09 +0000 (20:53 -0700)]
Merge pull request #16664 from kinnewig/tpetra_wrappers_comparison_operator
Add a comparison operator to LA::TpetraWrappers::Vector
Sebastian Kinnewig [Sun, 18 Feb 2024 17:37:51 +0000 (18:37 +0100)]
Add a comparison operator to LA::TpetraWrappers::Vector
Sebastian Kinnewig [Sun, 18 Feb 2024 15:14:31 +0000 (16:14 +0100)]
Add reinit() method to create a LA::TpetraWrappers::SparseMatrix from a dealii::SparseMatrix.
Sebastian Kinnewig [Sun, 18 Feb 2024 14:10:04 +0000 (15:10 +0100)]
Rework reinit_matrix in LA:TpetraWrappers::SparseMatrix
Sebastian Kinnewig [Fri, 2 Feb 2024 10:35:56 +0000 (11:35 +0100)]
Make TpetraWrapps::Vector compatible with BlockVectorBase.
Sebastian Kinnewig [Fri, 2 Feb 2024 10:35:09 +0000 (11:35 +0100)]
Make TpetraWrapps::SparseMatrix compatible with BlockMatrixBase.
Sebastian Kinnewig [Wed, 31 Jan 2024 08:43:35 +0000 (09:43 +0100)]
Introduce TpetraWrappers::BlockSparseMatrix
Sebastian Kinnewig [Mon, 29 Jan 2024 20:55:26 +0000 (21:55 +0100)]
Introduce TpetraWrappers::BlockVector
Jan Philipp Thiele [Sat, 17 Feb 2024 16:19:22 +0000 (17:19 +0100)]
Remove verbose output from direct solver
Wolfgang Bangerth [Sat, 17 Feb 2024 15:24:40 +0000 (08:24 -0700)]
Merge pull request #16602 from jpthiele/tpetra-solverdirect
Add SolverDirect for Tpetra Wrappers
Jan Philipp Thiele [Mon, 12 Feb 2024 19:53:17 +0000 (20:53 +0100)]
Add initial support for Amesos2
Marc Fehling [Fri, 16 Feb 2024 20:47:00 +0000 (13:47 -0700)]
Update Trilinos readme.
Wolfgang Bangerth [Fri, 16 Feb 2024 17:31:33 +0000 (10:31 -0700)]
Merge pull request #16657 from drwells/extrude-assert
Assert that we only extrude quadrilateral meshes.
Daniel Arndt [Fri, 16 Feb 2024 14:54:03 +0000 (09:54 -0500)]
Merge pull request #16654 from bangerth/enable-if
Only enable a function if a template type is right.
David Wells [Fri, 16 Feb 2024 14:32:53 +0000 (09:32 -0500)]
Assert that we only extrude quadrilateral meshes.
Extruding mixed or triangle meshes requires wedges: this isn't implemented yet.
Wolfgang Bangerth [Fri, 16 Feb 2024 03:42:55 +0000 (20:42 -0700)]
Merge pull request #16645 from sebproell/nvector-multi
SUNDIALS N_Vector: implement efficient operations
Wolfgang Bangerth [Thu, 15 Feb 2024 22:50:39 +0000 (15:50 -0700)]
Remove an unnecessary 'inline'.
Matthias Maier [Fri, 16 Feb 2024 02:20:36 +0000 (02:20 +0000)]
Merge pull request #16632 from peterrum/compute_active_cell_halo_layer_pbc
GridTools::compute_active_cell_halo_layer() for periodic meshes
Matthias Maier [Fri, 16 Feb 2024 02:20:26 +0000 (02:20 +0000)]
Merge pull request #16633 from kronbichler/fix_empty_comm
MG transfer global coarsening: Avoid sending empty messages
Matthias Maier [Fri, 16 Feb 2024 02:20:17 +0000 (02:20 +0000)]
Merge pull request #16647 from bangerth/t-7
Add Tpetra tests that are already working.
Matthias Maier [Fri, 16 Feb 2024 00:38:31 +0000 (00:38 +0000)]
Merge pull request #16653 from tamiko/fix_mpi_datatype
Fix segmentation fault when using mpich
Wolfgang Bangerth [Wed, 14 Feb 2024 21:56:19 +0000 (14:56 -0700)]
Add output variants for SUNDIALS 7.
Wolfgang Bangerth [Wed, 14 Feb 2024 18:02:51 +0000 (11:02 -0700)]
Add Tpetra tests that are already working.
Wolfgang Bangerth [Thu, 15 Feb 2024 00:41:11 +0000 (17:41 -0700)]
Add the remaining SUNDIALS 7 output variants.
Wolfgang Bangerth [Thu, 15 Feb 2024 22:47:34 +0000 (15:47 -0700)]
Only enable a function if a template type is right.
Matthias Maier [Thu, 15 Feb 2024 22:03:22 +0000 (16:03 -0600)]
base/mpi.h: mark a template variable to have "const inline" linkage.
Matthias Maier [Thu, 15 Feb 2024 21:54:36 +0000 (15:54 -0600)]
base/mpi.cc: remove superfluous explicit instantiations of template variable
The `mpi.h` header already contains:
```
template <typename T>
const MPI_Datatype mpi_type_id_for_type = /* implementation detail */;
```
Meaning, the variable is known fully after including the header.
Furthermore, the `const` qualifier marks the (template) variable as
`static`. I.e., it has internal linkage.
Thus, we must not explicitly instantiate the variables (suggesting
"extern" linkage in all but the `mpi.cc` compilation unit). This
apparently not an issue with OpenMPI because `MPI_Datatype` is a
complex data structure. But it is an issue with mpich where
`MPI_Datatype` is a simple `int` - leading to a segmentation fault when
during program startup.
Sebastian Proell [Sat, 4 Nov 2023 11:39:18 +0000 (12:39 +0100)]
SUNDIALS N_Vector: implement efficient operations
These operation are only supported by deal.II vectors.
Wolfgang Bangerth [Thu, 15 Feb 2024 00:31:27 +0000 (17:31 -0700)]
Merge pull request #16648 from masterleinad/tpetra_sparse_matrix_frobenius
Tpetra: Add frobenius_norm to SparseMatrix
Wolfgang Bangerth [Thu, 15 Feb 2024 00:31:06 +0000 (17:31 -0700)]
Merge pull request #16649 from masterleinad/fix_optional_header_tpetra_vector
Add missing <optional> header for trilinos_tpetra_vector.h
Wolfgang Bangerth [Wed, 14 Feb 2024 21:51:34 +0000 (14:51 -0700)]
Merge pull request #16646 from jpthiele/testsuite-documentation
Add info for TPLs to testsuite doc.
Daniel Arndt [Wed, 14 Feb 2024 21:38:09 +0000 (16:38 -0500)]
Add missing <optional> header for trilinos_tpetra_vector.h
Daniel Arndt [Wed, 14 Feb 2024 21:31:28 +0000 (16:31 -0500)]
Tpetra: Add frobenius_norm to SparseMatrix
Jan Philipp Thiele [Wed, 14 Feb 2024 16:27:46 +0000 (17:27 +0100)]
Add info for TPLs to testsuite doc.
David Wells [Wed, 14 Feb 2024 17:35:30 +0000 (12:35 -0500)]
Merge pull request #16629 from masterleinad/github_ci_trilinos_tpetra
GitHub CI: Test building with Trilinos+Tpetra
Martin Kronbichler [Wed, 14 Feb 2024 08:06:29 +0000 (09:06 +0100)]
Merge pull request #16637 from bangerth/t-5
Fix Tpetra vector element access.
Daniel Arndt [Tue, 13 Feb 2024 18:20:45 +0000 (11:20 -0700)]
Merge pull request #16640 from bangerth/doc
Clarify the documentation of IndexSet::is_empty().
Wolfgang Bangerth [Tue, 13 Feb 2024 00:04:54 +0000 (17:04 -0700)]
Use 'auto' instead of declaring a complicated type.
Wolfgang Bangerth [Tue, 13 Feb 2024 02:47:59 +0000 (19:47 -0700)]
Clarify the documentation of IndexSet::is_empty().
Wolfgang Bangerth [Tue, 13 Feb 2024 02:37:34 +0000 (19:37 -0700)]
Merge pull request #16638 from lethe-cfd/changelog_colorize_cylinder_shell
Add missing changelog entry for colorize cylinder_shell
Bruno Blais [Tue, 13 Feb 2024 00:04:06 +0000 (19:04 -0500)]
Add missing changelog entry
Wolfgang Bangerth [Mon, 12 Feb 2024 20:56:41 +0000 (13:56 -0700)]
Apply the same patch also to the set() function.
Wolfgang Bangerth [Mon, 12 Feb 2024 20:54:08 +0000 (13:54 -0700)]
Add an assertion.
Wolfgang Bangerth [Mon, 12 Feb 2024 20:46:13 +0000 (13:46 -0700)]
Create views lazily, once we know that we need them.
Wolfgang Bangerth [Mon, 12 Feb 2024 20:26:14 +0000 (13:26 -0700)]
Rearrange code slightly.
Daniel Arndt [Mon, 12 Feb 2024 20:42:22 +0000 (13:42 -0700)]
Merge pull request #16497 from Rombur/rename_cudawrappers
Move matrix free classes from CUDAWrappers namespace to Portable namespace
Peter Munch [Mon, 12 Feb 2024 18:57:14 +0000 (19:57 +0100)]
Merge pull request #16634 from kronbichler/improve_docu
MPI compute index owner: improve documentation of flag
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