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https://gitweb.dealii.org/ - dealii.git/log
Timo Heister [Sun, 7 Feb 2016 14:37:36 +0000 (09:37 -0500)]
minor rewording
Matthias Maier [Sun, 7 Feb 2016 02:12:30 +0000 (20:12 -0600)]
Merge pull request #2145 from tjhei/update_copyright_years
update copyright years
Matthias Maier [Sun, 7 Feb 2016 02:06:29 +0000 (20:06 -0600)]
Merge pull request #2143 from tjhei/documentation_updates
Documentation updates
Timo Heister [Sun, 7 Feb 2016 01:42:28 +0000 (20:42 -0500)]
update copyright years
Timo Heister [Sun, 7 Feb 2016 01:33:22 +0000 (20:33 -0500)]
fix astyle
Timo Heister [Sun, 7 Feb 2016 00:47:56 +0000 (19:47 -0500)]
wrapcomments.py: numbered list support
Timo Heister [Sun, 7 Feb 2016 00:21:36 +0000 (19:21 -0500)]
update update_copyright script
-i is only valid if you process a file
Timo Heister [Sat, 6 Feb 2016 23:59:42 +0000 (18:59 -0500)]
fix block formulas
Timo Heister [Sat, 6 Feb 2016 23:48:03 +0000 (18:48 -0500)]
doxygen doesn't like numbered lists
Timo Heister [Sat, 6 Feb 2016 23:47:33 +0000 (18:47 -0500)]
more manual formatting
Timo Heister [Sat, 6 Feb 2016 23:33:21 +0000 (18:33 -0500)]
improve wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 22:40:54 +0000 (17:40 -0500)]
manual formatting fixes for wrapcomments.py
Timo Heister [Sat, 6 Feb 2016 22:19:54 +0000 (17:19 -0500)]
formatting: release step 0b
Timo Heister [Sat, 6 Feb 2016 21:49:01 +0000 (16:49 -0500)]
various documentation fixes
Wolfgang Bangerth [Sat, 6 Feb 2016 03:03:51 +0000 (21:03 -0600)]
Merge pull request #2142 from tjhei/msvc_bigobj_fix
fix MSVC compilation by adding /bigobj
Timo Heister [Sat, 6 Feb 2016 02:46:38 +0000 (21:46 -0500)]
fix MSVC compilation by adding /bigobj
this fixes "fatal error C1128: number of sections exceeded object file format limit"
Wolfgang Bangerth [Fri, 5 Feb 2016 18:21:45 +0000 (12:21 -0600)]
Merge pull request #2100 from drwells/remove-whitespace-in-get_fe_by_name
Remove whitespace in get fe by name
Bruno Turcksin [Fri, 5 Feb 2016 16:57:02 +0000 (11:57 -0500)]
Merge pull request #2140 from tjhei/fix_tests2
fix tests without cxx11
Timo Heister [Fri, 5 Feb 2016 16:42:13 +0000 (11:42 -0500)]
fix tests without cxx11
Matthias Maier [Fri, 5 Feb 2016 15:25:30 +0000 (09:25 -0600)]
Merge pull request #2139 from tjhei/metis_test_output
fix metis tests
Timo Heister [Fri, 5 Feb 2016 14:53:41 +0000 (09:53 -0500)]
fix metis tests
On my machine with 64bit ints and 32bit metis I am getting the 32bit results
and so the tests fail. Fix this by always comparing against all possible
outputs. Also include additional output for metis_04.
Martin Kronbichler [Fri, 5 Feb 2016 14:49:47 +0000 (15:49 +0100)]
Merge pull request #2138 from tjhei/metis_user_include
add metis include dir to USER_INCLUDE_DIRS
Timo Heister [Fri, 5 Feb 2016 14:30:16 +0000 (09:30 -0500)]
add metis include dir to USER_INCLUDE_DIRS
otherwise tests/metis/metis_01a fails with "fatal error: 'metis.h' file not found"
Timo Heister [Fri, 5 Feb 2016 14:26:59 +0000 (09:26 -0500)]
Merge pull request #2137 from tjhei/fix_tests
fix several tests
Timo Heister [Fri, 5 Feb 2016 13:02:50 +0000 (08:02 -0500)]
fix several tests
David Wells [Fri, 5 Feb 2016 12:52:05 +0000 (07:52 -0500)]
Merge pull request #2136 from tjhei/fix__parallelepiped_test
fix tests/grid/grid_parallelepiped_05
Timo Heister [Fri, 5 Feb 2016 12:42:09 +0000 (07:42 -0500)]
fix tests/grid/grid_parallelepiped_05
Matthias Maier [Fri, 5 Feb 2016 04:11:32 +0000 (22:11 -0600)]
Merge pull request #2134 from tjhei/boost_blacklist2
Boost blacklist2
David Wells [Fri, 22 Jan 2016 18:16:41 +0000 (13:16 -0500)]
Add some spaces in the get_fe_by_name test.
David Wells [Fri, 22 Jan 2016 16:38:46 +0000 (11:38 -0500)]
Let FE names have spaces between words.
Previously, things like
FESystem[FE_Q(1) - FE_Q(2)]
caused parsing errors due to the spaces around the '-'. The new behavior is to
delete space that is not surrounded by 'word' characters (things that match the
regular expression [A-Za-z0-9_]) before parsing the name.
David Wells [Fri, 5 Feb 2016 03:30:34 +0000 (22:30 -0500)]
Merge pull request #2135 from tjhei/fix_compilation_grid_gen
fix compilation errors
Timo Heister [Fri, 5 Feb 2016 03:20:12 +0000 (22:20 -0500)]
fix compilation errors
gcc and intel rightfully want the template parameters spelled out.
Timo Heister [Fri, 5 Feb 2016 00:04:14 +0000 (19:04 -0500)]
also remove Boost_DIR
Timo Heister [Fri, 5 Feb 2016 00:00:23 +0000 (19:00 -0500)]
use correct version variables
Timo Heister [Fri, 5 Feb 2016 00:00:05 +0000 (19:00 -0500)]
cleanup boost variables
Matthias Maier [Thu, 4 Feb 2016 23:48:52 +0000 (17:48 -0600)]
Merge pull request #2132 from tjhei/boost_blacklist
blacklist boost version 1.58
Timo Heister [Thu, 4 Feb 2016 23:44:50 +0000 (18:44 -0500)]
move check to configure_boost
Wolfgang Bangerth [Thu, 4 Feb 2016 23:24:22 +0000 (17:24 -0600)]
Merge pull request #1936 from tjhei/hyper_rectangle_codim_fixes
fix *_hyper_rectangle for codim and add new subdivided_parallelepiped
Wolfgang Bangerth [Thu, 4 Feb 2016 23:23:33 +0000 (17:23 -0600)]
Merge pull request #2133 from tjhei/test_empty_results
handle empty test output
Timo Heister [Thu, 4 Feb 2016 23:17:49 +0000 (18:17 -0500)]
handle empty test output
If the make command to compile a test returns empty output (don't ask me
why that happened on my machine), quote it in the regex to avoid an
error like:
"string sub-command REGEX, mode MATCH needs at least 5 arguments"
Timo Heister [Thu, 4 Feb 2016 19:43:18 +0000 (14:43 -0500)]
changelog
Timo Heister [Wed, 2 Dec 2015 19:53:47 +0000 (14:53 -0500)]
fix *_hyper_rectangle for codim and add new subdivided_parallelepiped
- extend documentation what happens if dim!=spacedim
- add new subdivided_parallelepiped for codim1 and 2
- switch to Point<dim> in *_hyper_rectangle
Timo Heister [Thu, 4 Feb 2016 22:40:59 +0000 (17:40 -0500)]
blacklist boost version 1.58
addresses #1591
Timo Heister [Thu, 4 Feb 2016 15:39:56 +0000 (10:39 -0500)]
Merge pull request #1934 from Arezou-gh/local-triangulations
Add GridTools::build_triangulation_from_patch() and GridTools::get_cells_at_coarsest_common_level().
Arezou Ghesmati [Thu, 4 Feb 2016 01:04:21 +0000 (19:04 -0600)]
Add modified tests for build_triangulation_from_patch()
Timo Heister [Tue, 2 Feb 2016 20:56:02 +0000 (15:56 -0500)]
Merge pull request #2129 from kronbichler/master
Fix bug in matrix multiplication
Martin Kronbichler [Tue, 2 Feb 2016 19:20:48 +0000 (20:20 +0100)]
Fix bug in matrix multiplication
Wolfgang Bangerth [Mon, 1 Feb 2016 20:18:49 +0000 (14:18 -0600)]
Merge pull request #2127 from pesser/fix_warning
avoid warning about unused variable
Patrick Esser [Mon, 1 Feb 2016 19:42:22 +0000 (20:42 +0100)]
avoid warning about unused variable
According to the documentation of ArpackSolver::solve the first parameter is
unused. Do not give it a name in the definition to avoid unused variable
warnings.
Denis Davydov [Mon, 1 Feb 2016 13:56:48 +0000 (14:56 +0100)]
Merge pull request #2126 from davydden/compute_line_dof_identities_assert
remove invalid assert in compute_line_dof_identities() related to eleā¦
Denis Davydov [Mon, 1 Feb 2016 10:26:01 +0000 (11:26 +0100)]
remove invalid assert in compute_line_dof_identities() related to element domination; add a unit test
Wolfgang Bangerth [Sat, 30 Jan 2016 03:06:08 +0000 (21:06 -0600)]
Merge pull request #2125 from tjhei/msvc_fix
fix msvc compilation
Timo Heister [Sat, 30 Jan 2016 02:44:28 +0000 (21:44 -0500)]
fix msvc compilation
Luca Heltai [Fri, 29 Jan 2016 09:59:53 +0000 (10:59 +0100)]
Merge pull request #2121 from sebastianGl31415/master
modified step-34 tutorial introduction
Luca Heltai [Fri, 29 Jan 2016 09:57:38 +0000 (10:57 +0100)]
Merge pull request #2101 from drwells/continuation-line-whitespace
Skip whitespace at the start of continuing lines.
Timo Heister [Thu, 28 Jan 2016 22:34:05 +0000 (23:34 +0100)]
Merge pull request #2122 from bangerth/fix-64bit-output
Adjust the output of two tests for 64-bit runs.
sebastianGl31415 [Thu, 28 Jan 2016 16:42:23 +0000 (17:42 +0100)]
Update intro.dox
I fixed language mistakes.
Wolfgang Bangerth [Thu, 28 Jan 2016 15:25:51 +0000 (09:25 -0600)]
Merge pull request #2116 from kronbichler/master
Fix 2:1 balance on artificial cells over periodic boundaries.
Martin Kronbichler [Thu, 28 Jan 2016 14:26:31 +0000 (15:26 +0100)]
Choose better names for tests
Martin Kronbichler [Thu, 28 Jan 2016 14:09:21 +0000 (15:09 +0100)]
Use GeometryInfo to fix non-standard orientation case
David Wells [Thu, 28 Jan 2016 13:47:26 +0000 (08:47 -0500)]
Update a changelog entry.
David Wells [Thu, 28 Jan 2016 13:44:48 +0000 (08:44 -0500)]
Allow parameter files to end with a '\'.
Wolfgang Bangerth [Thu, 28 Jan 2016 13:35:27 +0000 (07:35 -0600)]
Adjust the output of two tests for 64-bit runs.
Ludwig Sebastian Glane [Thu, 28 Jan 2016 11:46:42 +0000 (11:46 +0000)]
modified step-34 tutorial introduction
Martin Kronbichler [Wed, 27 Jan 2016 17:47:11 +0000 (18:47 +0100)]
Test beauty
Martin Kronbichler [Wed, 27 Jan 2016 17:41:26 +0000 (18:41 +0100)]
Add changelog entry
Martin Kronbichler [Wed, 27 Jan 2016 17:41:16 +0000 (18:41 +0100)]
Overload perpare_coarsening_and_refinement for the periodic case
Martin Kronbichler [Wed, 27 Jan 2016 16:39:05 +0000 (17:39 +0100)]
Add additional test with hanging nodes. Fix bug in identification of periodic vertices.
Martin Kronbichler [Tue, 26 Jan 2016 08:02:10 +0000 (09:02 +0100)]
Fix 2:1 balance on artificial cells over periodic boundaries.
Martin Kronbichler [Thu, 28 Jan 2016 08:04:42 +0000 (09:04 +0100)]
Merge pull request #2119 from fsonner/sparsevankafix
Fix local second-order coupling in SparseVanka
Florian Sonner [Wed, 27 Jan 2016 14:56:48 +0000 (15:56 +0100)]
Add SparseVanka fix message to changes.h
Wolfgang Bangerth [Tue, 26 Jan 2016 17:17:48 +0000 (11:17 -0600)]
Merge pull request #2120 from tjhei/petsc_matrix_err_msg
improve PETSc sparse_matrix constructor error msg
Timo Heister [Tue, 26 Jan 2016 14:03:53 +0000 (15:03 +0100)]
improve PETSc sparse_matrix constructor error msg
If you construct a PETSc sparse matrix with invalid IndexSets for local
rows/columns, you only get a cryptic PETSc error code. This commit adds
a check in debug mode with a helpful error message.
Florian Sonner [Tue, 26 Jan 2016 13:37:20 +0000 (14:37 +0100)]
Fix local second-order coupling in SparseVanka
Fixes issue #2118.
Wolfgang Bangerth [Tue, 26 Jan 2016 11:50:17 +0000 (05:50 -0600)]
Merge pull request #2117 from tjhei/metis_small
fix METIS partitioning with too many processors
Timo Heister [Tue, 26 Jan 2016 09:54:25 +0000 (10:54 +0100)]
changelog
Timo Heister [Tue, 26 Jan 2016 09:51:57 +0000 (10:51 +0100)]
fix the case where we reduce to 1 domain
Timo Heister [Tue, 26 Jan 2016 09:51:38 +0000 (10:51 +0100)]
fix metis partitioning with too many processors
If you have more processors than cells to partition, METIS will behave
in a weird and undesired way:
- at some point all subdomains land on a single processor
- METIS produces an error message "***Cannot bisect a graph with 0
vertices!"
Timo Heister [Tue, 26 Jan 2016 08:29:54 +0000 (09:29 +0100)]
add test
Wolfgang Bangerth [Mon, 25 Jan 2016 15:13:30 +0000 (09:13 -0600)]
Merge pull request #2113 from bangerth/further-FEValues-cleanups-40
Remove internal update_once/update_each functions
Wolfgang Bangerth [Mon, 25 Jan 2016 15:12:55 +0000 (09:12 -0600)]
Fix copyright year range.
Wolfgang Bangerth [Sun, 24 Jan 2016 20:03:36 +0000 (14:03 -0600)]
Slightly clarify a comment.
Wolfgang Bangerth [Sun, 24 Jan 2016 19:16:33 +0000 (13:16 -0600)]
Remove declarations of functions that are no longer implemented.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:23:34 +0000 (19:23 -0600)]
Remove an outdated comment.
Replace it with links to places where the comments are up to date.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:23:07 +0000 (19:23 -0600)]
Remove now no longer used FE_PolyTensor::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:22:45 +0000 (19:22 -0600)]
Remove now no longer used FE_Poly::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 01:05:36 +0000 (19:05 -0600)]
Remove now no longer used FE_PolyFace::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 00:54:54 +0000 (18:54 -0600)]
Remove now no longer used FE_FaceQ::update_once/each.
Wolfgang Bangerth [Sun, 24 Jan 2016 00:54:29 +0000 (18:54 -0600)]
Remove now no longer used FE_DGP_Nonparametric::update_once/each.
Bruno Turcksin [Mon, 25 Jan 2016 13:26:36 +0000 (08:26 -0500)]
Merge pull request #2115 from bangerth/fix-doxygen-markup
Fix doxygen markup.
Bruno Turcksin [Mon, 25 Jan 2016 13:26:03 +0000 (08:26 -0500)]
Merge pull request #2112 from bangerth/further-FEValues-cleanups-38
Initialize the last non-const field of FiniteElementData from constructor arguments
Wolfgang Bangerth [Mon, 25 Jan 2016 04:13:43 +0000 (22:13 -0600)]
Fix doxygen markup.
doxygen generates unpleasantly looking markup if the text that goes with a
'@name' tag is spread over two lines. Fix this.
David Wells [Mon, 25 Jan 2016 03:29:11 +0000 (22:29 -0500)]
Add more authors to ParameterHandler.
David Wells [Mon, 25 Jan 2016 03:28:52 +0000 (22:28 -0500)]
Elaborate on the continuation line comment.
David Wells [Mon, 25 Jan 2016 02:44:30 +0000 (21:44 -0500)]
Document the line continuation tests.
David Wells [Mon, 25 Jan 2016 02:43:36 +0000 (21:43 -0500)]
Improve the style in parameter_handler.cc a bit.
David Wells [Fri, 22 Jan 2016 22:57:41 +0000 (17:57 -0500)]
Ignore surrounding whitespace if continuing lines.
This commit modifies the behavior present in both
23f306dfc5 (which did
not join lines if there was whitespace following a '\') and
0b962b1103 (which did not trim whitespace at the beginning of continued
lines).
We decided to remove whitespace at the beginning of a continued line
both because it was implemented that way in
23f306dfc5 (i.e., the 'fix'
in
0b962b1103 was wrong) and because it makes writing things
like (example provided by Alberto Sartori)
set Finite element space = FESystem[FE_Q(1)^d-\
FE_DGPMonomial(0)-\
FE_DGPMonomial(0)]
possible.
For the sake of posterity, here is part of the discussion (PR #2101)
which lead to the decision to remove trailing whitespace:
drwells:
I agree with @asartori86 that trailing whitespace is a mistake. I
suppose that I ultimately disagree because I think it is one that we
should 'forgive'. I think we are in agreement that we should join lines
if the last non-whitespace character is a `\`, then.
bangerth:
I agree, too, that trailing whitespace is a mistake. But there are two
options:
* Enforce it. In those cases you'll get an error about the next line not
being what the parser expects, while the file looks completely correct
visually. People will probably spend a long time rubbing their eyes
before they realize the problem.
* Forgive it, at the cost of not being able to support valid cases where
the user wants to have a backslash within the text, followed by only
spaces. That seems like a rare case to happen in practice, and also a
poor choice of syntax for whatever the user wanted to achieve.
From a usability standpoint, option 1 seems more appealing.
Martin Kronbichler [Sun, 24 Jan 2016 21:15:37 +0000 (22:15 +0100)]
Merge pull request #2114 from bangerth/update-copyright-years
Update copyright year of all files touched in 2015.
Wolfgang Bangerth [Sun, 24 Jan 2016 21:03:16 +0000 (15:03 -0600)]
Update copyright year of all files touched in 2015.
Wolfgang Bangerth [Sun, 24 Jan 2016 19:33:38 +0000 (13:33 -0600)]
Merge pull request #2111 from tjhei/fix_step_40
fix crash in petsc step-40
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