]>
https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Thu, 23 Jan 2020 01:37:07 +0000 (18:37 -0700)]
Selectively disable complex UMFPACK instantiations if DEAL_II_WITH_COMPLEX=OFF.
Wolfgang Bangerth [Thu, 23 Jan 2020 00:26:21 +0000 (17:26 -0700)]
Break a long string onto shorter lines.
Wolfgang Bangerth [Mon, 30 Dec 2019 19:23:55 +0000 (12:23 -0700)]
Add a changelog entry.
Wolfgang Bangerth [Mon, 30 Dec 2019 19:08:22 +0000 (12:08 -0700)]
Add tests.
Wolfgang Bangerth [Mon, 30 Dec 2019 19:07:39 +0000 (12:07 -0700)]
Implement the solution of complex linear systems using UMFPACK.
Wolfgang Bangerth [Mon, 30 Dec 2019 17:48:24 +0000 (10:48 -0700)]
Also compile the complex versions of UMFPACK functions.
An attempt at simply changing what I though needed to be changed in
the CMakeLists.txt failed with linker errors, so I decided to go back
to the original UMFPACK Makefile and be more faithful that file's
structure by renaming some of the variables we have in the current
file. The diff is likely difficult to read, but the changes are
ultimately not rocket science.
Wolfgang Bangerth [Mon, 30 Dec 2019 16:01:13 +0000 (09:01 -0700)]
Do not compile UMFPACK with int indices.
UMFPACK can be compiled for 'int' and 'long int' index types. We only
use the 'long int' versions, so don't waste the time to compile the
'int' versions of all of these functions.
David Wells [Mon, 6 Jan 2020 16:17:44 +0000 (11:17 -0500)]
Merge pull request #9234 from tjhei/doc_grid_gen_simplex
doc: minor GridGenerator changes
Timo Heister [Sun, 5 Jan 2020 22:47:48 +0000 (17:47 -0500)]
doc: minor GridGenerator changes
Timo Heister [Mon, 6 Jan 2020 14:37:32 +0000 (09:37 -0500)]
Merge pull request #9229 from masterleinad/return_correct_indentation_error_code
Return error code from indent-all in check_indentation.sh
Daniel Arndt [Sun, 5 Jan 2020 16:25:38 +0000 (17:25 +0100)]
Return error code from indent-all in check_indentation.sh
Martin Kronbichler [Sun, 5 Jan 2020 22:24:56 +0000 (23:24 +0100)]
Merge pull request #9233 from masterleinad/remove_cryptic_comment
Remove cryptic comment
Daniel Arndt [Sun, 5 Jan 2020 21:58:01 +0000 (22:58 +0100)]
Remove cryptic comment
Martin Kronbichler [Sun, 5 Jan 2020 20:17:59 +0000 (21:17 +0100)]
Merge pull request #9106 from peterrum/pft_without_p4est
Make pft independent of p4est
Martin Kronbichler [Sun, 5 Jan 2020 18:50:44 +0000 (19:50 +0100)]
Merge pull request #9230 from kronbichler/fix_mf_code
Fix two bugs in matrix-free code
Peter Munch [Thu, 28 Nov 2019 07:01:59 +0000 (08:01 +0100)]
Make pft tests independent of p4est
Daniel Arndt [Sun, 5 Jan 2020 16:59:27 +0000 (17:59 +0100)]
Merge pull request #9219 from tjhei/output_table_deprecate
deprecate members in TimerOutput
Martin Kronbichler [Sun, 5 Jan 2020 16:37:55 +0000 (17:37 +0100)]
Fix two bugs in matrix-free code
Daniel Arndt [Sun, 5 Jan 2020 16:31:42 +0000 (17:31 +0100)]
Merge pull request #9224 from peterrum/dofhandlerpolicy_p4estfree_macros
Replace some DEAL_II_WITH_P4EST with DEAL_II_WITH_MPI
Peter Munch [Sat, 4 Jan 2020 23:56:41 +0000 (00:56 +0100)]
Replace some DEAL_II_WITH_P4EST with DEAL_II_WITH_MPI
Daniel Arndt [Sun, 5 Jan 2020 12:29:34 +0000 (13:29 +0100)]
Merge pull request #9223 from peterrum/ecl-mapping-fix
Bug fix in PR #9155
Martin Kronbichler [Sun, 5 Jan 2020 10:13:01 +0000 (11:13 +0100)]
Merge pull request #9225 from tjhei/doxygen_fix_citation
fix a doxygen citation
Timo Heister [Sun, 5 Jan 2020 00:40:13 +0000 (19:40 -0500)]
Merge pull request #9190 from bangerth/doc
Annotate a few function arguments in doxygen.
Timo Heister [Sun, 5 Jan 2020 00:23:09 +0000 (19:23 -0500)]
fix a doxygen citation
might be related to #9222
Peter Munch [Sat, 4 Jan 2020 23:51:27 +0000 (00:51 +0100)]
Fix check of neigboring cells
Daniel Arndt [Sat, 4 Jan 2020 22:35:21 +0000 (23:35 +0100)]
Merge pull request #9218 from peterrum/get_projection_matrix_for_float
Instantiate FETools::get_projection_matrix for float
Timo Heister [Sat, 4 Jan 2020 21:28:20 +0000 (16:28 -0500)]
Merge pull request #9215 from peterrum/dofhandlerpolicy_p4estfree
Make DoFHandlerPolicy independent of p4est
Martin Kronbichler [Sat, 4 Jan 2020 19:15:03 +0000 (20:15 +0100)]
Merge pull request #9155 from peterrum/ecl-mapping
ECL: make mapping of neighbor available
Peter Munch [Sat, 4 Jan 2020 17:43:25 +0000 (18:43 +0100)]
Use CellId::binary_type for communication
Peter Munch [Thu, 2 Jan 2020 20:07:22 +0000 (21:07 +0100)]
Fix labels
Peter Munch [Thu, 2 Jan 2020 20:02:52 +0000 (21:02 +0100)]
Fix serial compilation
Peter Munch [Thu, 2 Jan 2020 16:55:47 +0000 (17:55 +0100)]
Make internal::DoFHandlerImplementation::Policy::ParallelDistributed independent from p4est
Martin Kronbichler [Sat, 4 Jan 2020 19:02:38 +0000 (20:02 +0100)]
Merge pull request #9214 from peterrum/cellid_ancestorof
Add CellId::is_ancestor_of
Timo Heister [Sat, 4 Jan 2020 01:48:01 +0000 (20:48 -0500)]
deprecate members in TimerOutput
It looks like these identical functions have been around for a long
time. While I prefer enter/exit_section(), we use the others in most
places.
Timo Heister [Fri, 3 Jan 2020 21:13:23 +0000 (16:13 -0500)]
Merge pull request #9217 from peterrum/fix_date
Fix date in header
Peter Munch [Fri, 3 Jan 2020 18:13:15 +0000 (19:13 +0100)]
Instantiate FETools::get_projection_matrix for float
Peter Munch [Fri, 3 Jan 2020 18:00:57 +0000 (19:00 +0100)]
Fix date in header
Peter Munch [Thu, 2 Jan 2020 17:16:18 +0000 (18:16 +0100)]
Add CellId::is_ancestor_of
David Wells [Thu, 2 Jan 2020 05:07:02 +0000 (00:07 -0500)]
Merge pull request #9211 from bangerth/instantiate
Instantiate DoFTools::map_dofs_to_support_points() also for <1,3>.
Wolfgang Bangerth [Thu, 2 Jan 2020 00:21:23 +0000 (17:21 -0700)]
Merge pull request #9209 from drwells/fix-using-namespace-links
Keep the 'dealii::' in 'using namespace dealii::'.
Wolfgang Bangerth [Thu, 2 Jan 2020 00:20:27 +0000 (17:20 -0700)]
Merge pull request #9208 from drwells/fix-tbb-version-check
Fix our TBB version check.
Wolfgang Bangerth [Thu, 2 Jan 2020 00:14:00 +0000 (17:14 -0700)]
Instantiate DoFTools::map_dofs_to_support_points() also for <1,3>.
Martin Kronbichler [Wed, 1 Jan 2020 18:46:23 +0000 (19:46 +0100)]
Merge pull request #9205 from bangerth/fix
Use a range-based for loop.
David Wells [Tue, 31 Dec 2019 22:00:15 +0000 (17:00 -0500)]
Fix our TBB version check.
Since the regular expression we used was eager it matched the 202 in 2020,
yielding a version number of 0.0. Note that this worked with older versions of
TBB since we would get, e.g., version 8.0 instead of version 2018.0.
David Wells [Tue, 31 Dec 2019 23:05:58 +0000 (18:05 -0500)]
Keep the 'dealii::' in 'using namespace dealii::'.
Some of our example code on the website (e.g., step-40) doesn't work since we
get rid of the preceding dealii and print
using namespace ::LinearAlgebraPETSc;
when it should be
using namespace dealii::LinearAlgebraPETSc;
instead. This change keeps the 'dealii::' only in this case, which currently
only occurs in step-40.cc, step-50.cc, step-55.cc, and local_integrators.h.
Wolfgang Bangerth [Sun, 22 Dec 2019 19:12:57 +0000 (12:12 -0700)]
Annotate a few function arguments in doxygen.
Plus minor other fixes.
Wolfgang Bangerth [Tue, 31 Dec 2019 17:53:28 +0000 (10:53 -0700)]
Use a range-based for loop.
Martin Kronbichler [Tue, 31 Dec 2019 07:20:07 +0000 (08:20 +0100)]
Merge pull request #9200 from bangerth/fix-1
Fix what looks like an obvious typo in the UMFPACK source files.
Martin Kronbichler [Tue, 31 Dec 2019 07:19:08 +0000 (08:19 +0100)]
Merge pull request #9201 from bangerth/fix-3
Minor doc updates.
Martin Kronbichler [Tue, 31 Dec 2019 07:18:04 +0000 (08:18 +0100)]
Merge pull request #9203 from bangerth/fix-2
Simplify the code in a test a bit.
Martin Kronbichler [Tue, 31 Dec 2019 07:17:02 +0000 (08:17 +0100)]
Merge pull request #9202 from bangerth/fix-4
Mark a bunch of input arguments as 'const'.
Wolfgang Bangerth [Mon, 30 Dec 2019 18:55:02 +0000 (11:55 -0700)]
Mark a bunch of input arguments as 'const'.
Wolfgang Bangerth [Mon, 30 Dec 2019 18:52:49 +0000 (11:52 -0700)]
Minor doc updates.
Wolfgang Bangerth [Mon, 30 Dec 2019 18:24:06 +0000 (11:24 -0700)]
Simplify the code a bit.
In earlier versions of deal.II, the SparseDirectUMFPACK could deal
with block matrices but not block vectors, and so we needed to do some
copying around. This is no longer necessary.
Wolfgang Bangerth [Mon, 30 Dec 2019 16:10:06 +0000 (09:10 -0700)]
Fix what looks like an obvious typo.
The BLAS_ZGER function is called a few lines below but doesn't have a
prototype/declaration.
David Wells [Mon, 30 Dec 2019 16:43:58 +0000 (11:43 -0500)]
Merge pull request #9199 from bangerth/umfpack
Avoid _n and _m as variable names.
Wolfgang Bangerth [Mon, 30 Dec 2019 14:15:40 +0000 (07:15 -0700)]
Avoid _n and _m as variable names.
In general, we don't use variable names that start with underscores, but here using
one-letter variables can also easily be avoided.
David Wells [Sun, 29 Dec 2019 15:41:35 +0000 (10:41 -0500)]
Merge pull request #9197 from bangerth/40
Let step-40 only depend on step-6, not step-17.
Wolfgang Bangerth [Sun, 29 Dec 2019 02:33:14 +0000 (19:33 -0700)]
Let step-40 only depend on step-6, not step-17.
Back in the day, we thought of 17 (which now uses the parallel::shared::Triangulation) as
a stepping stone to get to 40, but that's not really any longer how I think about step-40:
To me, that's a stand-alone basic technique, whereas step-17 is sort of a niche topic
for connoisseurs and those interested in a particular topic.
So remove the dependency 17->40 to make the tutorial graph simpler.
Daniel Arndt [Wed, 25 Dec 2019 17:51:54 +0000 (18:51 +0100)]
Merge pull request #9194 from bangerth/40
Label step-40 as a 'basic' tutorial program.
Timo Heister [Tue, 24 Dec 2019 18:51:26 +0000 (13:51 -0500)]
Merge pull request #9193 from bangerth/61
Let step-61 only build on step-51, not step-4.
Wolfgang Bangerth [Tue, 24 Dec 2019 17:17:39 +0000 (10:17 -0700)]
Label step-40 as a 'basic' tutorial program.
So far, only steps 1-6 were listed as 'basic', but step-40 has attained a similar
status in recent years since quite a number of new programs are now parallel based
on the techniques discussed there. I think it would make sense to reflect that in
the graph by giving it a highlighted style.
Wolfgang Bangerth [Tue, 24 Dec 2019 17:15:04 +0000 (10:15 -0700)]
Let step-61 only build on step-51, not step-4.
The tutorial graph is complicated enough as it is. We don't need to list dependencies
on some of the more basic tutorials.
Wolfgang Bangerth [Mon, 23 Dec 2019 14:41:12 +0000 (07:41 -0700)]
Merge pull request #9188 from peterrum/dof_accessor_include
Include dof_accessor.h
Daniel Arndt [Mon, 23 Dec 2019 14:29:20 +0000 (09:29 -0500)]
Merge pull request #9191 from tjhei/mpi_h_warning
silence system header MPI warning
Peter Munch [Sat, 21 Dec 2019 19:10:09 +0000 (20:10 +0100)]
Include dof_accessor.h
Daniel Arndt [Mon, 23 Dec 2019 11:42:48 +0000 (06:42 -0500)]
Merge pull request #9186 from masterleinad/avoid_generic_lambda
Avoid variable template in hp::Refinement
Daniel Arndt [Mon, 23 Dec 2019 11:28:47 +0000 (06:28 -0500)]
Merge pull request #9157 from kronbichler/shape_info_inverse_shapes
Add field for inverse/projection of 1D polynomials to MF::ShapeInfo
Daniel Arndt [Mon, 23 Dec 2019 10:39:04 +0000 (05:39 -0500)]
Merge pull request #9182 from bangerth/deprecate
Deprecate some versions of DoFTools::extract_dofs().
Daniel Arndt [Sat, 21 Dec 2019 15:35:20 +0000 (10:35 -0500)]
Avoid variable template in hp::Refinement
Timo Heister [Mon, 23 Dec 2019 02:41:10 +0000 (21:41 -0500)]
silence system header MPI warning
I am getting
/usr/include/mpich/mpicxx.h:1523:24: warning: ‘virtual MPI::Nullcomm&
MPI::Nullcomm::Clone() const’ can be marked override [-Wsuggest-
override]
with gcc5 and mpich 3.1. Fix this.
Wolfgang Bangerth [Sun, 22 Dec 2019 18:33:12 +0000 (11:33 -0700)]
Merge pull request #9183 from peterrum/fedgq-mem
Implement FE_Poly::memory_consumption
Wolfgang Bangerth [Sun, 22 Dec 2019 18:25:11 +0000 (11:25 -0700)]
Add a missing newline at the end of the file.
Wolfgang Bangerth [Sun, 22 Dec 2019 18:03:29 +0000 (11:03 -0700)]
Merge pull request #9187 from masterleinad/precise_namespace
Specify namespace in precondition.h more precisely
Wolfgang Bangerth [Sun, 22 Dec 2019 17:55:53 +0000 (10:55 -0700)]
Merge pull request #9185 from masterleinad/fix_warnings
Avoid warnings in tests
Peter Munch [Fri, 20 Dec 2019 10:49:44 +0000 (11:49 +0100)]
Implement FE_Poly::memory_consumption so that memory_consumption works for FE_Q and FE_DGQ
Martin Kronbichler [Sat, 21 Dec 2019 20:43:57 +0000 (21:43 +0100)]
Merge pull request #9189 from peterrum/fix_typo
Fix typo
Peter Munch [Sat, 21 Dec 2019 20:09:16 +0000 (21:09 +0100)]
Fix typo
Daniel Arndt [Sat, 21 Dec 2019 15:57:41 +0000 (10:57 -0500)]
Specify namespace in precondition.h more precisely
Daniel Arndt [Sat, 21 Dec 2019 15:31:21 +0000 (10:31 -0500)]
Avoid warnings in tests
Wolfgang Bangerth [Fri, 20 Dec 2019 00:25:16 +0000 (17:25 -0700)]
Add a changelog entry.
Wolfgang Bangerth [Fri, 20 Dec 2019 00:23:37 +0000 (17:23 -0700)]
Adjust tests.
Wolfgang Bangerth [Fri, 20 Dec 2019 00:23:20 +0000 (17:23 -0700)]
Deprecate some versions of DoFTools::extract_dofs().
Add other versions that *return* their results, rather than doing so via
output arguments.
Wolfgang Bangerth [Fri, 20 Dec 2019 01:02:59 +0000 (18:02 -0700)]
Merge pull request #9151 from marcfehling/hp-fixed-number
Introduced hp::Refinement::p_adaptivity_fixed_number().
Wolfgang Bangerth [Thu, 19 Dec 2019 19:45:33 +0000 (12:45 -0700)]
Merge pull request #9125 from konsim83/feature_tensor_function_parser
Feature tensor function parser
Wolfgang Bangerth [Thu, 19 Dec 2019 18:18:14 +0000 (11:18 -0700)]
Add a missing newline to the end of the file.
Martin Kronbichler [Thu, 19 Dec 2019 17:40:43 +0000 (18:40 +0100)]
Merge pull request #9147 from masterleinad/fix_cuda_float
Test matrix-free CUDA for float
Konrad Simon [Mon, 16 Sep 2019 21:15:01 +0000 (23:15 +0200)]
New feature class TensorFunctionParser. The class inherits directly from TensorFuntion
and has an interface similar to FunctionParser. Some stuff to iterface muParser was
moved to different files mu_parser_internal.h and *.cc. The documentation provided
is self contained apart from some places where we refer to the documentation of
FuntionParser. Changelog file provided. (All commits are squashed into this one.)
Daniel Arndt [Wed, 18 Dec 2019 21:48:46 +0000 (16:48 -0500)]
Merge pull request #9174 from nicola-giuliani/default_case_manifold
added default case for normal to mesh projection manifold
David Wells [Wed, 18 Dec 2019 16:32:36 +0000 (11:32 -0500)]
Merge pull request #9175 from kronbichler/improve_channel_with_cylinder_grid
Improve GridGenerator::channel_with_cylinder
Nicola Giuliani [Mon, 16 Dec 2019 08:58:10 +0000 (09:58 +0100)]
added default case for normal to mesh projection manifold
and indent
Martin Kronbichler [Tue, 17 Dec 2019 08:02:52 +0000 (09:02 +0100)]
Choose more appropriate points for test
Martin Kronbichler [Tue, 17 Dec 2019 07:51:05 +0000 (08:51 +0100)]
Changelog
Martin Kronbichler [Mon, 16 Dec 2019 14:40:30 +0000 (15:40 +0100)]
Improve GridGenerator::channel_with_cylinder
Wolfgang Bangerth [Tue, 17 Dec 2019 01:18:50 +0000 (18:18 -0700)]
Merge pull request #9036 from BenBrands/test_for_hp_and_dist_tria
Adding a test for hp::DoFHandler and parallel::distributed::Triangulation
Wolfgang Bangerth [Tue, 17 Dec 2019 00:58:47 +0000 (17:58 -0700)]
Merge pull request #9176 from peterrum/mg_transfer_remove_line
Remove unnecessary assignment
Wolfgang Bangerth [Tue, 17 Dec 2019 00:47:57 +0000 (17:47 -0700)]
Merge pull request #9172 from luca-heltai/move-tests
Moved tests into their correct subdirectory.
Bruno Turcksin [Mon, 16 Dec 2019 22:00:08 +0000 (17:00 -0500)]
Add a series of new python wrappers (#9148)
Add a series of new python wrappers
Peter Munch [Mon, 16 Dec 2019 20:54:06 +0000 (21:54 +0100)]
Remove unnecessary assignment
Benjamin Brands [Sun, 15 Dec 2019 21:01:38 +0000 (22:01 +0100)]
add test derived from step-4 to check interplay of hp::DoFHandler and parallel::distributed::Triangulation for a locally refined mesh
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