Minor adjustment of whitespace.

git-svn-id: https://svn.dealii.org/trunk@21850 0785d39b-7218-0410-832d-ea1e28bc413d

and do it correctly.

git-svn-id: https://svn.dealii.org/trunk@21836 0785d39b-7218-0410-832d-ea1e28bc413d

step-41: require Trilinos in the makefile to make build-test pass without Trilinos.

git-svn-id: https://svn.dealii.org/trunk@21835 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a directory that was apparently accidentally added.

git-svn-id: https://svn.dealii.org/trunk@21832 0785d39b-7218-0410-832d-ea1e28bc413d

Remove output files no longer needed for this test.

git-svn-id: https://svn.dealii.org/trunk@21831 0785d39b-7218-0410-832d-ea1e28bc413d

Minor edits.

git-svn-id: https://svn.dealii.org/trunk@21830 0785d39b-7218-0410-832d-ea1e28bc413d

Add the output directory for polynomial_minus_equals.cc.

git-svn-id: https://svn.dealii.org/trunk@21829 0785d39b-7218-0410-832d-ea1e28bc413d

New test

git-svn-id: https://svn.dealii.org/trunk@21826 0785d39b-7218-0410-832d-ea1e28bc413d

Regenerate.

git-svn-id: https://svn.dealii.org/trunk@21823 0785d39b-7218-0410-832d-ea1e28bc413d

On OpenMPI, headers included from mpi.h produce lots of warnings for unused function arguments. Suppress them.

git-svn-id: https://svn.dealii.org/trunk@21822 0785d39b-7218-0410-832d-ea1e28bc413d

Filled step-41.cc with content of main.cc

git-svn-id: https://svn.dealii.org/trunk@21821 0785d39b-7218-0410-832d-ea1e28bc413d

Refine test that checks for deal.II and Trilinos MPI consistency.

git-svn-id: https://svn.dealii.org/trunk@21820 0785d39b-7218-0410-832d-ea1e28bc413d

Added empty step-41.cc to allow doxygen to complete

git-svn-id: https://svn.dealii.org/trunk@21818 0785d39b-7218-0410-832d-ea1e28bc413d

Fix compilation with gcc4.5

git-svn-id: https://svn.dealii.org/trunk@21815 0785d39b-7218-0410-832d-ea1e28bc413d

Fix formatting of comments.

git-svn-id: https://svn.dealii.org/trunk@21811 0785d39b-7218-0410-832d-ea1e28bc413d

Add to documentation.

git-svn-id: https://svn.dealii.org/trunk@21810 0785d39b-7218-0410-832d-ea1e28bc413d

Skeleton for quasistatic plasticity example: step-41

git-svn-id: https://svn.dealii.org/trunk@21809 0785d39b-7218-0410-832d-ea1e28bc413d

Correctly set svn ignore property.

git-svn-id: https://svn.dealii.org/trunk@21808 0785d39b-7218-0410-832d-ea1e28bc413d

Remove executables etc from repository. Set svn properties.

git-svn-id: https://svn.dealii.org/trunk@21807 0785d39b-7218-0410-832d-ea1e28bc413d

Changed wiki address.

git-svn-id: https://svn.dealii.org/trunk@21806 0785d39b-7218-0410-832d-ea1e28bc413d

Simplify test.

git-svn-id: https://svn.dealii.org/trunk@21805 0785d39b-7218-0410-832d-ea1e28bc413d

Augment.

git-svn-id: https://svn.dealii.org/trunk@21804 0785d39b-7218-0410-832d-ea1e28bc413d

Make sure things can actually be compiled.

git-svn-id: https://svn.dealii.org/trunk@21803 0785d39b-7218-0410-832d-ea1e28bc413d

Tests for parent functions in DoFIterators

git-svn-id: https://svn.dealii.org/trunk@21801 0785d39b-7218-0410-832d-ea1e28bc413d

Tests for parent functions in DoFIterators

git-svn-id: https://svn.dealii.org/trunk@21800 0785d39b-7218-0410-832d-ea1e28bc413d

Clarify documentation.

git-svn-id: https://svn.dealii.org/trunk@21796 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup in local_to_global functions: remove unnecessary make_global_row_list functions. Also incorporate documentation change in r21776 on distributed grid branch.

git-svn-id: https://svn.dealii.org/trunk@21792 0785d39b-7218-0410-832d-ea1e28bc413d

fix link to build test in documentation.

git-svn-id: https://svn.dealii.org/trunk@21790 0785d39b-7218-0410-832d-ea1e28bc413d

Parent Function for DoFIterators

git-svn-id: https://svn.dealii.org/trunk@21789 0785d39b-7218-0410-832d-ea1e28bc413d

Update comment.

git-svn-id: https://svn.dealii.org/trunk@21787 0785d39b-7218-0410-832d-ea1e28bc413d

Make sure we detect the case that Trilinos and deal.II disagree on their MPI settings.

git-svn-id: https://svn.dealii.org/trunk@21786 0785d39b-7218-0410-832d-ea1e28bc413d

Use the obvious function, rather than work around a missing instantiation.

git-svn-id: https://svn.dealii.org/trunk@21785 0785d39b-7218-0410-832d-ea1e28bc413d

Instantiate a missing function.

git-svn-id: https://svn.dealii.org/trunk@21784 0785d39b-7218-0410-832d-ea1e28bc413d

Allow setting CXXFLAGSG and CXXFLAGSO at have it be picked up by ./configure.

git-svn-id: https://svn.dealii.org/trunk@21783 0785d39b-7218-0410-832d-ea1e28bc413d

Remove temporary file.

git-svn-id: https://svn.dealii.org/trunk@21782 0785d39b-7218-0410-832d-ea1e28bc413d

Test other combinations of dim/spacedim as well.

git-svn-id: https://svn.dealii.org/trunk@21781 0785d39b-7218-0410-832d-ea1e28bc413d

Simplify testcase. No need to have a temporary file.

git-svn-id: https://svn.dealii.org/trunk@21780 0785d39b-7218-0410-832d-ea1e28bc413d

Initialize patch index properly.

git-svn-id: https://svn.dealii.org/trunk@21779 0785d39b-7218-0410-832d-ea1e28bc413d

Add correct output.

git-svn-id: https://svn.dealii.org/trunk@21778 0785d39b-7218-0410-832d-ea1e28bc413d

Set properties.

git-svn-id: https://svn.dealii.org/trunk@21777 0785d39b-7218-0410-832d-ea1e28bc413d

Minor rewording.

git-svn-id: https://svn.dealii.org/trunk@21773 0785d39b-7218-0410-832d-ea1e28bc413d

No need to list new tests -- they aren't user visible anyway.

git-svn-id: https://svn.dealii.org/trunk@21772 0785d39b-7218-0410-832d-ea1e28bc413d

Revert apparently accidental part of commit.

git-svn-id: https://svn.dealii.org/trunk@21771 0785d39b-7218-0410-832d-ea1e28bc413d

Ensure output correctness on our usual test system.

git-svn-id: https://svn.dealii.org/trunk@21770 0785d39b-7218-0410-832d-ea1e28bc413d

Add output directory.

git-svn-id: https://svn.dealii.org/trunk@21769 0785d39b-7218-0410-832d-ea1e28bc413d

new test

git-svn-id: https://svn.dealii.org/trunk@21763 0785d39b-7218-0410-832d-ea1e28bc413d

new test

git-svn-id: https://svn.dealii.org/trunk@21762 0785d39b-7218-0410-832d-ea1e28bc413d

Simplify test case.

git-svn-id: https://svn.dealii.org/trunk@21761 0785d39b-7218-0410-832d-ea1e28bc413d

Fix bug introduced in r21754.

git-svn-id: https://svn.dealii.org/trunk@21760 0785d39b-7218-0410-832d-ea1e28bc413d

Reverted previous ARPACK patch it does not help it is not relevant for now

git-svn-id: https://svn.dealii.org/trunk@21759 0785d39b-7218-0410-832d-ea1e28bc413d

changed to MGConstrainedDoFs

git-svn-id: https://svn.dealii.org/trunk@21758 0785d39b-7218-0410-832d-ea1e28bc413d

Implement 'keep_constrained_entries' part in add_entries_local_to_global for non-quadratic matrices.

git-svn-id: https://svn.dealii.org/trunk@21754 0785d39b-7218-0410-832d-ea1e28bc413d

Make sure BLAS and LAPACK are there if we want to link in ARPACK

git-svn-id: https://svn.dealii.org/trunk@21753 0785d39b-7218-0410-832d-ea1e28bc413d

new test

git-svn-id: https://svn.dealii.org/trunk@21752 0785d39b-7218-0410-832d-ea1e28bc413d

Make code compile again.

git-svn-id: https://svn.dealii.org/trunk@21751 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup reinit functions. Remove some unnecessary code, make the code scale.

git-svn-id: https://svn.dealii.org/trunk@21750 0785d39b-7218-0410-832d-ea1e28bc413d

fix typo.

git-svn-id: https://svn.dealii.org/trunk@21749 0785d39b-7218-0410-832d-ea1e28bc413d

add test for DataOutReader::merge. Currently failing. Why does the -1 change to 0 in
the second patch?

git-svn-id: https://svn.dealii.org/trunk@21748 0785d39b-7218-0410-832d-ea1e28bc413d

Type check aclocal

git-svn-id: https://svn.dealii.org/trunk@21747 0785d39b-7218-0410-832d-ea1e28bc413d

put the right results to generic

git-svn-id: https://svn.dealii.org/trunk@21746 0785d39b-7218-0410-832d-ea1e28bc413d

new test for Newton's method

git-svn-id: https://svn.dealii.org/trunk@21745 0785d39b-7218-0410-832d-ea1e28bc413d

new test

git-svn-id: https://svn.dealii.org/trunk@21744 0785d39b-7218-0410-832d-ea1e28bc413d

new test

git-svn-id: https://svn.dealii.org/trunk@21743 0785d39b-7218-0410-832d-ea1e28bc413d

Add a DEAL_II_USE_ARPACK to config.h.

git-svn-id: https://svn.dealii.org/trunk@21742 0785d39b-7218-0410-832d-ea1e28bc413d

New test

git-svn-id: https://svn.dealii.org/trunk@21741 0785d39b-7218-0410-832d-ea1e28bc413d

Workaround by Wolfgang to get PetscScalar is complex working, plus release VECTOR_FUNCTIONS back to petsc complex

git-svn-id: https://svn.dealii.org/trunk@21740 0785d39b-7218-0410-832d-ea1e28bc413d

Parallelization of FETools::compute_embedding_matrices

git-svn-id: https://svn.dealii.org/trunk@21739 0785d39b-7218-0410-832d-ea1e28bc413d

add new test

git-svn-id: https://svn.dealii.org/trunk@21738 0785d39b-7218-0410-832d-ea1e28bc413d

fix documentation

git-svn-id: https://svn.dealii.org/trunk@21737 0785d39b-7218-0410-832d-ea1e28bc413d

Fix documentation

git-svn-id: https://svn.dealii.org/trunk@21736 0785d39b-7218-0410-832d-ea1e28bc413d

changed the MGConstraints to MGConstrainedDoFs

git-svn-id: https://svn.dealii.org/trunk@21735 0785d39b-7218-0410-832d-ea1e28bc413d

change the MGConstraints to MGConstrainedDoFs

git-svn-id: https://svn.dealii.org/trunk@21734 0785d39b-7218-0410-832d-ea1e28bc413d

rename the MGConstraints to MGConstrainedDofs and change the call in the
transfer accordingly

git-svn-id: https://svn.dealii.org/trunk@21733 0785d39b-7218-0410-832d-ea1e28bc413d

use the MGConstrainedDoFs object in the transfer

git-svn-id: https://svn.dealii.org/trunk@21732 0785d39b-7218-0410-832d-ea1e28bc413d

changed the call of the constructor in MGTransferPrebuilt due to changes
in the library

git-svn-id: https://svn.dealii.org/trunk@21731 0785d39b-7218-0410-832d-ea1e28bc413d

slightly different output now

git-svn-id: https://svn.dealii.org/trunk@21730 0785d39b-7218-0410-832d-ea1e28bc413d

Revert previous PETSc patch which is legal with clanguage C plus plus

git-svn-id: https://svn.dealii.org/trunk@21729 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a warning.

git-svn-id: https://svn.dealii.org/trunk@21728 0785d39b-7218-0410-832d-ea1e28bc413d

Make better use of the arpack architecture macro

git-svn-id: https://svn.dealii.org/trunk@21727 0785d39b-7218-0410-832d-ea1e28bc413d

Tests for the parent relation.

git-svn-id: https://svn.dealii.org/trunk@21726 0785d39b-7218-0410-832d-ea1e28bc413d

set precision to avoid roundoff trouble

git-svn-id: https://svn.dealii.org/trunk@21725 0785d39b-7218-0410-832d-ea1e28bc413d

set precision to 6 to avoid roundoff trouble

git-svn-id: https://svn.dealii.org/trunk@21724 0785d39b-7218-0410-832d-ea1e28bc413d

Actually bind ARPACK into lib/liblac

git-svn-id: https://svn.dealii.org/trunk@21723 0785d39b-7218-0410-832d-ea1e28bc413d

Detect ARPACK and ARPACK architecture

git-svn-id: https://svn.dealii.org/trunk@21722 0785d39b-7218-0410-832d-ea1e28bc413d

Parent relation for cells.

git-svn-id: https://svn.dealii.org/trunk@21721 0785d39b-7218-0410-832d-ea1e28bc413d

Add comment.

git-svn-id: https://svn.dealii.org/trunk@21720 0785d39b-7218-0410-832d-ea1e28bc413d

Add new test.

git-svn-id: https://svn.dealii.org/trunk@21719 0785d39b-7218-0410-832d-ea1e28bc413d

Test function n_intervals, get_view and fill_index_vector in IndexSet.

git-svn-id: https://svn.dealii.org/trunk@21718 0785d39b-7218-0410-832d-ea1e28bc413d

One more test.

git-svn-id: https://svn.dealii.org/trunk@21717 0785d39b-7218-0410-832d-ea1e28bc413d

Make sure SparseDirectMUMPS shows up in the documentation.

git-svn-id: https://svn.dealii.org/trunk@21716 0785d39b-7218-0410-832d-ea1e28bc413d

Fix bug introduced in r21708

git-svn-id: https://svn.dealii.org/trunk@21715 0785d39b-7218-0410-832d-ea1e28bc413d

Fix columns in distribute_local_to_global with rectangular matrices.

git-svn-id: https://svn.dealii.org/trunk@21714 0785d39b-7218-0410-832d-ea1e28bc413d

pass a MGConstraints instead of the boundary_indices only in
build_matrices

git-svn-id: https://svn.dealii.org/trunk@21713 0785d39b-7218-0410-832d-ea1e28bc413d

changed the interface of MGConstraints. Made the member variables
private and wrote functions to acess them. Changes made in step-16
accordingly.

git-svn-id: https://svn.dealii.org/trunk@21712 0785d39b-7218-0410-832d-ea1e28bc413d

New test.

git-svn-id: https://svn.dealii.org/trunk@21711 0785d39b-7218-0410-832d-ea1e28bc413d

Add member functions. Document.

git-svn-id: https://svn.dealii.org/trunk@21710 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup.

git-svn-id: https://svn.dealii.org/trunk@21709 0785d39b-7218-0410-832d-ea1e28bc413d

Simplify a lot of assertions. Add instantiations for block sparsity patterns.

git-svn-id: https://svn.dealii.org/trunk@21708 0785d39b-7218-0410-832d-ea1e28bc413d

changed the make_fluy_sparsity_pattern in  way that it can handle a
ConstraintMatrix

git-svn-id: https://svn.dealii.org/trunk@21707 0785d39b-7218-0410-832d-ea1e28bc413d

new instantiation for make_flux_sparsity_pattern using a ConstraintMatrix

git-svn-id: https://svn.dealii.org/trunk@21706 0785d39b-7218-0410-832d-ea1e28bc413d