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https://gitweb.dealii.org/ - dealii-svn.git/log
maier [Thu, 3 Oct 2013 23:17:06 +0000 (23:17 +0000)]
Bugfix: resolve issue 105
git-svn-id: https://svn.dealii.org/trunk@31109
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bangerth [Thu, 3 Oct 2013 20:39:51 +0000 (20:39 +0000)]
Rename a few variables. Initialize vectors with vector sets and communicators, rather than other vectors, to make clear that the vector is not in fact copied, and to make it clearer what index set is being used.
git-svn-id: https://svn.dealii.org/trunk@31105
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bangerth [Thu, 3 Oct 2013 20:08:21 +0000 (20:08 +0000)]
Remove file accidentally added.
git-svn-id: https://svn.dealii.org/trunk@31104
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bangerth [Thu, 3 Oct 2013 20:07:55 +0000 (20:07 +0000)]
Remove one variable whose value is always equal to another.
git-svn-id: https://svn.dealii.org/trunk@31103
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bangerth [Thu, 3 Oct 2013 20:00:34 +0000 (20:00 +0000)]
Remove one variable whose value is always equal to another.
git-svn-id: https://svn.dealii.org/trunk@31102
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young [Thu, 3 Oct 2013 17:47:32 +0000 (17:47 +0000)]
do a todo - use PetscReal where real_type is needed.
git-svn-id: https://svn.dealii.org/trunk@31095
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young [Thu, 3 Oct 2013 13:38:48 +0000 (13:38 +0000)]
Set default problem type for SLEPc - this should be the GNHEP.
git-svn-id: https://svn.dealii.org/trunk@31084
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heister [Wed, 2 Oct 2013 18:25:01 +0000 (18:25 +0000)]
add to changelog
git-svn-id: https://svn.dealii.org/trunk@31078
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heister [Wed, 2 Oct 2013 17:59:44 +0000 (17:59 +0000)]
do not use n_default_threads but n_threads()
git-svn-id: https://svn.dealii.org/trunk@31077
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heister [Wed, 2 Oct 2013 17:52:30 +0000 (17:52 +0000)]
replace n_default_threads by n_threads()
git-svn-id: https://svn.dealii.org/trunk@31076
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heister [Wed, 2 Oct 2013 17:51:27 +0000 (17:51 +0000)]
leave some comments and todos
git-svn-id: https://svn.dealii.org/trunk@31075
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heister [Wed, 2 Oct 2013 17:40:44 +0000 (17:40 +0000)]
do not use n_default_threads
git-svn-id: https://svn.dealii.org/trunk@31074
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heister [Wed, 2 Oct 2013 17:40:15 +0000 (17:40 +0000)]
introduce new n_threads(), deprecate n_default_threads
git-svn-id: https://svn.dealii.org/trunk@31073
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heister [Wed, 2 Oct 2013 17:35:40 +0000 (17:35 +0000)]
remove references to n_default_threads() in error_estimator.h that are ignored anyway.
git-svn-id: https://svn.dealii.org/trunk@31072
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heister [Wed, 2 Oct 2013 17:30:01 +0000 (17:30 +0000)]
only use TBB in workstream if we are allowed to use more than one thread
git-svn-id: https://svn.dealii.org/trunk@31071
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turcksin [Wed, 2 Oct 2013 17:00:47 +0000 (17:00 +0000)]
Now when WorkStream uses graph coloring and that there are not enough elements in a color, the elements are aggregated and copied serially.
git-svn-id: https://svn.dealii.org/trunk@31070
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bangerth [Wed, 2 Oct 2013 15:06:52 +0000 (15:06 +0000)]
Make it compile.
git-svn-id: https://svn.dealii.org/trunk@31069
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bangerth [Wed, 2 Oct 2013 15:03:54 +0000 (15:03 +0000)]
Slightly more documentation. Leave a few TODOs in the introduction.
git-svn-id: https://svn.dealii.org/trunk@31068
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maier [Wed, 2 Oct 2013 00:47:35 +0000 (00:47 +0000)]
Cherry-pick revisions 31065 and 31066 from branch_port_the_testsuite
git-svn-id: https://svn.dealii.org/trunk@31067
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maier [Tue, 1 Oct 2013 21:35:48 +0000 (21:35 +0000)]
Port the distributed periodicity test, add missing template instantiation
git-svn-id: https://svn.dealii.org/trunk@31064
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maier [Tue, 1 Oct 2013 21:35:47 +0000 (21:35 +0000)]
Port grid_tools_05.cc test to collect_periodic_faces
git-svn-id: https://svn.dealii.org/trunk@31063
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bangerth [Tue, 1 Oct 2013 20:36:19 +0000 (20:36 +0000)]
Suppress warnings of the following kind:
..................
/.../deal.II/source/numerics/matrix_tools.cc(2088): warning #2536: type qualifiers are meaningless here
bool (*comp)(const typename SparseMatrix<number>::iterator::value_type p,
^
..................
Avoiding the 'const' here is not always completely possible in
template contexts, depending on whether 'value_type' already
has the 'const' in it or not.
git-svn-id: https://svn.dealii.org/trunk@31060
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bangerth [Tue, 1 Oct 2013 18:49:50 +0000 (18:49 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@31059
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turcksin [Tue, 1 Oct 2013 17:12:43 +0000 (17:12 +0000)]
Fix a bug in graph coloring and add a test for it.
git-svn-id: https://svn.dealii.org/trunk@31058
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kronbichler [Tue, 1 Oct 2013 15:18:37 +0000 (15:18 +0000)]
Link in step-51 tutorial program.
git-svn-id: https://svn.dealii.org/trunk@31057
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bangerth [Tue, 1 Oct 2013 00:25:23 +0000 (00:25 +0000)]
Do some operations in parallel on tasks.
git-svn-id: https://svn.dealii.org/trunk@31055
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bangerth [Tue, 1 Oct 2013 00:24:55 +0000 (00:24 +0000)]
Work around an issue in a copy constructor we needed for C++11 compatibility and Intel's ICC.
git-svn-id: https://svn.dealii.org/trunk@31054
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maier [Mon, 30 Sep 2013 23:49:41 +0000 (23:49 +0000)]
Take over revisions 31045 - 31051 from branch_port_the_testsuite
Cleanup GridTools::collect_periodic_*:
- Remove GridTools::collect_periodic_face_pairs
- Unify interface for remaining GridTools::collect_periodic_faces
- Remove deprecated functions that aren't even released
- Bugfix: Instantiate collect_periodic_faces, this resolves a compilation
issue with icc
git-svn-id: https://svn.dealii.org/trunk@31052
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bangerth [Mon, 30 Sep 2013 22:40:01 +0000 (22:40 +0000)]
Fix a couple of assertions.
git-svn-id: https://svn.dealii.org/trunk@31047
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bangerth [Mon, 30 Sep 2013 18:40:42 +0000 (18:40 +0000)]
Disable warning 327 for Intel compilers. This leads to (correct)
warnings of the kind
File: source/fe/fe_values.cc Line: 430
/.../deal.II/source/fe/fe_values.cc(430): warning #327: NULL reference is not allowed
fe_values(*static_cast<dealii::FEValuesBase<dim, spacedim>*> (0)),
^
detected during instantiation of "dealii::FEValuesViews::Tensor<2, dim, spacedim>::Tensor() [with dim=1, spacedim=1]" at line 76 of "/usr/include/c++/4.6/bits/stl_construct.h"
But we'd like to use this construct anyway.
git-svn-id: https://svn.dealii.org/trunk@31043
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bangerth [Mon, 30 Sep 2013 15:45:54 +0000 (15:45 +0000)]
Provide a copy constructor.
git-svn-id: https://svn.dealii.org/trunk@31041
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bangerth [Mon, 30 Sep 2013 14:36:13 +0000 (14:36 +0000)]
Leave a TODO.
git-svn-id: https://svn.dealii.org/trunk@31037
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bangerth [Mon, 30 Sep 2013 14:15:20 +0000 (14:15 +0000)]
Add a copy constructor in hopes of making Intel's ICC happy.
git-svn-id: https://svn.dealii.org/trunk@31036
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bangerth [Mon, 30 Sep 2013 13:38:56 +0000 (13:38 +0000)]
Suppress output to console.
git-svn-id: https://svn.dealii.org/trunk@31033
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bangerth [Mon, 30 Sep 2013 13:36:31 +0000 (13:36 +0000)]
Move declaration of std::vector out of a loop.
git-svn-id: https://svn.dealii.org/trunk@31032
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bangerth [Mon, 30 Sep 2013 13:32:52 +0000 (13:32 +0000)]
Try to make older gccs happy.
git-svn-id: https://svn.dealii.org/trunk@31030
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bangerth [Mon, 30 Sep 2013 13:26:55 +0000 (13:26 +0000)]
Provide a copy constructor for the Task class. This should make
Intel ICC happy.
git-svn-id: https://svn.dealii.org/trunk@31029
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bangerth [Mon, 30 Sep 2013 13:26:36 +0000 (13:26 +0000)]
Provide a copy constructor for the accessor class. This should make
Intel ICC happy.
git-svn-id: https://svn.dealii.org/trunk@31028
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bangerth [Mon, 30 Sep 2013 13:16:11 +0000 (13:16 +0000)]
Move comment into the right place.
git-svn-id: https://svn.dealii.org/trunk@31027
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bangerth [Mon, 30 Sep 2013 03:52:45 +0000 (03:52 +0000)]
Document geometry generation.
git-svn-id: https://svn.dealii.org/trunk@31025
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bangerth [Mon, 30 Sep 2013 03:39:53 +0000 (03:39 +0000)]
Some more updates.
git-svn-id: https://svn.dealii.org/trunk@31024
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heister [Mon, 30 Sep 2013 01:16:24 +0000 (01:16 +0000)]
change const bool& parameter to not be a reference in write_hdf5_parallel
git-svn-id: https://svn.dealii.org/trunk@31023
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heister [Mon, 30 Sep 2013 00:50:21 +0000 (00:50 +0000)]
remove hdf5 related compiler warning
git-svn-id: https://svn.dealii.org/trunk@31022
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scott.miller [Mon, 30 Sep 2013 00:13:51 +0000 (00:13 +0000)]
Fix typo in documentation.
git-svn-id: https://svn.dealii.org/trunk@31021
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bangerth [Sun, 29 Sep 2013 23:19:32 +0000 (23:19 +0000)]
Try to align instantiations to declarations, in hopes of fixing bug #122.
git-svn-id: https://svn.dealii.org/trunk@31020
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bangerth [Sun, 29 Sep 2013 23:18:26 +0000 (23:18 +0000)]
Provide copy constructors for iterators.
git-svn-id: https://svn.dealii.org/trunk@31019
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bangerth [Sun, 29 Sep 2013 22:55:32 +0000 (22:55 +0000)]
More small mods.
git-svn-id: https://svn.dealii.org/trunk@31018
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bangerth [Sun, 29 Sep 2013 22:44:59 +0000 (22:44 +0000)]
Further cleanups.
git-svn-id: https://svn.dealii.org/trunk@31017
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bangerth [Sun, 29 Sep 2013 18:48:12 +0000 (18:48 +0000)]
Clean up member variable list somewhat. As far as possible, initialize member variables in the initializer list and then mark them as const.
git-svn-id: https://svn.dealii.org/trunk@31013
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bangerth [Sun, 29 Sep 2013 14:58:31 +0000 (14:58 +0000)]
Add a few comments. Fix a couple of oversights where the same function is used for both cell integrals and boundary integrals (though the evaluated function values are, in fact, only used for the boundary integrals).
git-svn-id: https://svn.dealii.org/trunk@31011
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frohne [Sat, 28 Sep 2013 23:20:10 +0000 (23:20 +0000)]
fix sphere obstacle function
git-svn-id: https://svn.dealii.org/trunk@31009
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bangerth [Sat, 28 Sep 2013 21:55:29 +0000 (21:55 +0000)]
Add a newline to the end of the file, as mandated by the C++ standard.
git-svn-id: https://svn.dealii.org/trunk@31006
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bangerth [Sat, 28 Sep 2013 21:55:12 +0000 (21:55 +0000)]
Add a newline to the end of the file, as mandated by the C++ standard.
git-svn-id: https://svn.dealii.org/trunk@31005
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bangerth [Sat, 28 Sep 2013 21:42:33 +0000 (21:42 +0000)]
Make compile with 64-bit.
git-svn-id: https://svn.dealii.org/trunk@31003
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bangerth [Sat, 28 Sep 2013 11:59:19 +0000 (11:59 +0000)]
More minor changes.
git-svn-id: https://svn.dealii.org/trunk@30999
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bangerth [Sat, 28 Sep 2013 11:40:39 +0000 (11:40 +0000)]
Slightly more cleanup.
git-svn-id: https://svn.dealii.org/trunk@30998
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heien [Fri, 27 Sep 2013 23:48:07 +0000 (23:48 +0000)]
Added DataOutFilter class to remove duplicate vertices/values and serialization for XDMFEntry class
git-svn-id: https://svn.dealii.org/trunk@30991
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bangerth [Fri, 27 Sep 2013 20:57:56 +0000 (20:57 +0000)]
Reindent.
git-svn-id: https://svn.dealii.org/trunk@30990
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bangerth [Fri, 27 Sep 2013 20:56:43 +0000 (20:56 +0000)]
Rename a couple of things.
git-svn-id: https://svn.dealii.org/trunk@30989
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bangerth [Fri, 27 Sep 2013 20:54:58 +0000 (20:54 +0000)]
Update.
git-svn-id: https://svn.dealii.org/trunk@30988
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bangerth [Fri, 27 Sep 2013 20:49:39 +0000 (20:49 +0000)]
Move around a bit of stuff. More documentation.
git-svn-id: https://svn.dealii.org/trunk@30987
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bangerth [Fri, 27 Sep 2013 13:10:22 +0000 (13:10 +0000)]
Move initialization of obstacle into constructor of main class.
git-svn-id: https://svn.dealii.org/trunk@30984
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bangerth [Fri, 27 Sep 2013 13:04:43 +0000 (13:04 +0000)]
Let the main class only store a pointer to the obstacle, not the object that reads in the file.
git-svn-id: https://svn.dealii.org/trunk@30981
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bangerth [Fri, 27 Sep 2013 13:02:54 +0000 (13:02 +0000)]
add
git-svn-id: https://svn.dealii.org/trunk@30980
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maier [Fri, 27 Sep 2013 12:49:42 +0000 (12:49 +0000)]
CMake: Bugfix - nice try...
git-svn-id: https://svn.dealii.org/trunk@30978
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heister [Fri, 27 Sep 2013 12:48:12 +0000 (12:48 +0000)]
fix crash in ConstraintMatrix constructor taking IndexSet (release mode only)
git-svn-id: https://svn.dealii.org/trunk@30977
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maier [Fri, 27 Sep 2013 12:43:26 +0000 (12:43 +0000)]
CMake: Bugfix: Also include 3rd party include directories in FindPETSC.conf
It is really necessary to use all exported include directories from a PETSc
installation.
git-svn-id: https://svn.dealii.org/trunk@30975
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bangerth [Fri, 27 Sep 2013 12:34:23 +0000 (12:34 +0000)]
Avoid infinite loop.
git-svn-id: https://svn.dealii.org/trunk@30973
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bangerth [Fri, 27 Sep 2013 12:21:55 +0000 (12:21 +0000)]
Make compile again.
git-svn-id: https://svn.dealii.org/trunk@30972
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frohne [Thu, 26 Sep 2013 21:39:35 +0000 (21:39 +0000)]
small change in update_solution_and_constraints
git-svn-id: https://svn.dealii.org/trunk@30971
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turcksin [Thu, 26 Sep 2013 20:37:50 +0000 (20:37 +0000)]
Use std_cxx1x::function for graph_coloring.
git-svn-id: https://svn.dealii.org/trunk@30970
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kanschat [Thu, 26 Sep 2013 18:42:50 +0000 (18:42 +0000)]
fix elasticity test
git-svn-id: https://svn.dealii.org/trunk@30964
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kanschat [Thu, 26 Sep 2013 18:42:28 +0000 (18:42 +0000)]
new residual Divergence::u_times_n\
fixed elasticity residuals
git-svn-id: https://svn.dealii.org/trunk@30963
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kanschat [Thu, 26 Sep 2013 15:49:18 +0000 (15:49 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@30961
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frohne [Thu, 26 Sep 2013 15:26:10 +0000 (15:26 +0000)]
splitting obstacle class into two classes
git-svn-id: https://svn.dealii.org/trunk@30959
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felix.gruber [Thu, 26 Sep 2013 12:24:50 +0000 (12:24 +0000)]
doc/users: fix some broken links
git-svn-id: https://svn.dealii.org/trunk@30950
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maier [Thu, 26 Sep 2013 09:28:52 +0000 (09:28 +0000)]
Fix a lot of links
git-svn-id: https://svn.dealii.org/trunk@30945
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maier [Thu, 26 Sep 2013 09:18:00 +0000 (09:18 +0000)]
Add a second link for the reports
git-svn-id: https://svn.dealii.org/trunk@30944
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maier [Thu, 26 Sep 2013 09:15:15 +0000 (09:15 +0000)]
Fix typos
git-svn-id: https://svn.dealii.org/trunk@30943
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kanschat [Thu, 26 Sep 2013 08:58:02 +0000 (08:58 +0000)]
advection residuals fixed
git-svn-id: https://svn.dealii.org/trunk@30942
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kanschat [Thu, 26 Sep 2013 08:19:33 +0000 (08:19 +0000)]
weak residuals
git-svn-id: https://svn.dealii.org/trunk@30941
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bangerth [Thu, 26 Sep 2013 01:22:38 +0000 (01:22 +0000)]
Fix name of type...
git-svn-id: https://svn.dealii.org/trunk@30939
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bangerth [Wed, 25 Sep 2013 22:49:59 +0000 (22:49 +0000)]
Use types::global_dof_indices.
git-svn-id: https://svn.dealii.org/trunk@30931
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bangerth [Wed, 25 Sep 2013 22:48:53 +0000 (22:48 +0000)]
Use types::global_dof_indices.
git-svn-id: https://svn.dealii.org/trunk@30930
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maier [Wed, 25 Sep 2013 22:33:26 +0000 (22:33 +0000)]
The big documentation overhaul
git-svn-id: https://svn.dealii.org/trunk@30929
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maier [Wed, 25 Sep 2013 20:30:34 +0000 (20:30 +0000)]
Finish documentation
git-svn-id: https://svn.dealii.org/trunk@30925
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turcksin [Wed, 25 Sep 2013 17:28:47 +0000 (17:28 +0000)]
Fix a bug in work_stream when using graph_coloring.
git-svn-id: https://svn.dealii.org/trunk@30922
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turcksin [Wed, 25 Sep 2013 16:12:27 +0000 (16:12 +0000)]
Use graph coloring whith work_stream.
git-svn-id: https://svn.dealii.org/trunk@30921
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bangerth [Wed, 25 Sep 2013 14:57:51 +0000 (14:57 +0000)]
Add note about yesterday's change to PETSc wrappers.
git-svn-id: https://svn.dealii.org/trunk@30920
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scott.miller [Wed, 25 Sep 2013 12:44:32 +0000 (12:44 +0000)]
Fix typo in documentation.
git-svn-id: https://svn.dealii.org/trunk@30919
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bangerth [Tue, 24 Sep 2013 18:25:07 +0000 (18:25 +0000)]
Avoid outputting 'number-number' since ./normalize might turn that into numbernumber if the second number just so happens to be zero -- and then consequently completely confuse numdiff.
git-svn-id: https://svn.dealii.org/trunk@30917
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bangerth [Tue, 24 Sep 2013 18:12:47 +0000 (18:12 +0000)]
Work around a change in PETSc 3.4.
git-svn-id: https://svn.dealii.org/trunk@30916
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kanschat [Tue, 24 Sep 2013 16:12:47 +0000 (16:12 +0000)]
instantiate selectors for const vectors
git-svn-id: https://svn.dealii.org/trunk@30915
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daniel.arndt [Tue, 24 Sep 2013 14:37:29 +0000 (14:37 +0000)]
Fixed bug in add_periodicity. There were errors when the mesh is not immediately refined.
git-svn-id: https://svn.dealii.org/trunk@30914
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kanschat [Tue, 24 Sep 2013 09:04:36 +0000 (09:04 +0000)]
add homogeneous boundary operator
git-svn-id: https://svn.dealii.org/trunk@30907
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bangerth [Tue, 24 Sep 2013 00:35:14 +0000 (00:35 +0000)]
More work.
git-svn-id: https://svn.dealii.org/trunk@30903
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bangerth [Mon, 23 Sep 2013 23:56:21 +0000 (23:56 +0000)]
Some more work.
git-svn-id: https://svn.dealii.org/trunk@30902
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bangerth [Mon, 23 Sep 2013 21:15:23 +0000 (21:15 +0000)]
More small rewrites.
git-svn-id: https://svn.dealii.org/trunk@30901
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bangerth [Mon, 23 Sep 2013 16:11:26 +0000 (16:11 +0000)]
Resize picture.
git-svn-id: https://svn.dealii.org/trunk@30900
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bangerth [Mon, 23 Sep 2013 15:58:51 +0000 (15:58 +0000)]
Use pictures from the central repository.
git-svn-id: https://svn.dealii.org/trunk@30898
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