]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoFix DD's comments; other documentation improvements
Jean-Paul Pelteret [Wed, 9 May 2018 06:39:15 +0000 (08:39 +0200)]
Fix DD's comments; other documentation improvements

6 years agoAdd documentation for AD module
Jean-Paul Pelteret [Tue, 8 May 2018 21:23:09 +0000 (23:23 +0200)]
Add documentation for AD module

Fixes #6172

6 years agoMerge pull request #6532 from bangerth/patch-1
Denis Davydov [Tue, 8 May 2018 19:51:53 +0000 (21:51 +0200)]
Merge pull request #6532 from bangerth/patch-1

Break a statement in a way that is easier to read.

6 years agoMerge pull request #6540 from drwells/step-60-typos
Luca Heltai [Tue, 8 May 2018 19:28:43 +0000 (21:28 +0200)]
Merge pull request #6540 from drwells/step-60-typos

Step 60 typos

6 years agoAdd the step-60 builds-on file. 6540/head
David Wells [Tue, 8 May 2018 19:09:28 +0000 (15:09 -0400)]
Add the step-60 builds-on file.

6 years agoRemove trailing whitespace.
David Wells [Tue, 8 May 2018 19:07:24 +0000 (15:07 -0400)]
Remove trailing whitespace.

6 years agoCreate another doxygen link.
David Wells [Tue, 8 May 2018 19:06:14 +0000 (15:06 -0400)]
Create another doxygen link.

6 years agoFix some markdown mishandling by doxygen.
David Wells [Tue, 8 May 2018 19:05:31 +0000 (15:05 -0400)]
Fix some markdown mishandling by doxygen.

My copy of doxygen does not correctly bold all statements with double
earmuffs; use HTML instead.

6 years agoRemove spurious links to Boundary.
David Wells [Tue, 8 May 2018 19:04:45 +0000 (15:04 -0400)]
Remove spurious links to Boundary.

6 years agoMerge pull request #6535 from masterleinad/increase_tolerance_quadrature_chebyshev
Martin Kronbichler [Tue, 8 May 2018 17:19:20 +0000 (19:19 +0200)]
Merge pull request #6535 from masterleinad/increase_tolerance_quadrature_chebyshev

Slighty increase tolerance in base/quadrature_chebyshev

6 years agoFix some typos in step-60.
David Wells [Tue, 8 May 2018 16:57:40 +0000 (12:57 -0400)]
Fix some typos in step-60.

6 years agoMerge pull request #6538 from drwells/update-gridgenerator-docs
Matthias Maier [Tue, 8 May 2018 16:18:38 +0000 (11:18 -0500)]
Merge pull request #6538 from drwells/update-gridgenerator-docs

Update gridgenerator docs

6 years agoMerge pull request #6536 from masterleinad/decrease_tolerance_lac_gmres_eigenvalues
Matthias Maier [Tue, 8 May 2018 16:16:43 +0000 (11:16 -0500)]
Merge pull request #6536 from masterleinad/decrease_tolerance_lac_gmres_eigenvalues

Slightly decrease solver tolerance in lac/gmres_eigenvalues

6 years agoRemove a static Manifold from an example. 6538/head
David Wells [Tue, 8 May 2018 16:05:44 +0000 (12:05 -0400)]
Remove a static Manifold from an example.

6 years agoClarify Manifold attachment in some functions.
David Wells [Tue, 8 May 2018 16:05:23 +0000 (12:05 -0400)]
Clarify Manifold attachment in some functions.

6 years agoMention Manifold attachment in GridGenerator.
David Wells [Tue, 8 May 2018 16:04:55 +0000 (12:04 -0400)]
Mention Manifold attachment in GridGenerator.

6 years agoMerge pull request #6533 from luca-heltai/hot-fix-step-60
Wolfgang Bangerth [Tue, 8 May 2018 13:55:14 +0000 (08:55 -0500)]
Merge pull request #6533 from luca-heltai/hot-fix-step-60

Make sure that also the output of the embedded value is on the deformed grid

6 years agoMerge pull request #6523 from bangerth/step-23
Daniel Arndt [Tue, 8 May 2018 13:33:20 +0000 (15:33 +0200)]
Merge pull request #6523 from bangerth/step-23

Align member variables in step-23.

6 years agoSlightly decrease solver tolerance in lac/gmres_eigenvalues 6536/head
Daniel Arndt [Tue, 8 May 2018 12:40:12 +0000 (14:40 +0200)]
Slightly decrease solver tolerance in lac/gmres_eigenvalues

6 years agoSlighty increase tolerance in base/quadrature_chebyshev 6535/head
Daniel Arndt [Tue, 8 May 2018 12:29:57 +0000 (14:29 +0200)]
Slighty increase tolerance in base/quadrature_chebyshev

6 years agoMerge pull request #6525 from bangerth/patch-6
Denis Davydov [Tue, 8 May 2018 11:01:36 +0000 (13:01 +0200)]
Merge pull request #6525 from bangerth/patch-6

Align colons in the query_testsuite script

6 years agoMake sure that also the output of the embedded value is on the deformed grid. 6533/head
Luca Heltai [Tue, 8 May 2018 11:01:24 +0000 (13:01 +0200)]
Make sure that also the output of the embedded value is on the deformed grid.

6 years agoAlign colons. 6525/head
Wolfgang Bangerth [Tue, 8 May 2018 09:22:53 +0000 (17:22 +0800)]
Align colons.

6 years agoBreak a statement in a way that is easier to read. 6532/head
Wolfgang Bangerth [Tue, 8 May 2018 08:34:06 +0000 (16:34 +0800)]
Break a statement in a way that is easier to read.

6 years agoUpdate step-23.cc 6523/head
Wolfgang Bangerth [Tue, 8 May 2018 08:12:25 +0000 (03:12 -0500)]
Update step-23.cc

6 years agoMerge pull request #6297 from luca-heltai/step-60
Jean-Paul Pelteret [Tue, 8 May 2018 07:25:41 +0000 (09:25 +0200)]
Merge pull request #6297 from luca-heltai/step-60

Step 60

6 years agoAlign member variables in step-23.
Wolfgang Bangerth [Tue, 8 May 2018 06:46:52 +0000 (14:46 +0800)]
Align member variables in step-23.

While there also use separate lines for each variable.

6 years agoMerge pull request #6520 from drwells/add-concept-comment
Denis Davydov [Tue, 8 May 2018 04:12:33 +0000 (06:12 +0200)]
Merge pull request #6520 from drwells/add-concept-comment

Add a comment on a compiler error.

6 years agoAdd a comment on a compiler error. 6520/head
David Wells [Tue, 8 May 2018 01:40:45 +0000 (21:40 -0400)]
Add a comment on a compiler error.

This is only a problem with GCC when -fconcepts is used with -std=c++11: this
combination does not make sense since C++11 does not support concepts, but
nonetheless the explicit types avoid an internal compiler error in this case.

6 years agoMerge pull request #6518 from drwells/update-step-38
Wolfgang Bangerth [Tue, 8 May 2018 01:26:03 +0000 (20:26 -0500)]
Merge pull request #6518 from drwells/update-step-38

Update step-38.

6 years agoMerge pull request #6519 from drwells/fix-initializer-list
Matthias Maier [Tue, 8 May 2018 00:49:56 +0000 (19:49 -0500)]
Merge pull request #6519 from drwells/fix-initializer-list

Work around an internal compiler error on GCC7.

6 years agoWork around an internal compiler error on GCC7. 6519/head
David Wells [Mon, 7 May 2018 23:14:22 +0000 (19:14 -0400)]
Work around an internal compiler error on GCC7.

6 years agoUpdate step-38. 6518/head
David Wells [Mon, 7 May 2018 22:32:07 +0000 (18:32 -0400)]
Update step-38.

6 years agoAdded doi. 6297/head
Luca Heltai [Mon, 7 May 2018 21:42:55 +0000 (23:42 +0200)]
Added doi.

6 years agoFixes to JP comments
Luca Heltai [Mon, 7 May 2018 20:32:59 +0000 (22:32 +0200)]
Fixes to JP comments

6 years agoMerge pull request #6513 from kronbichler/fix-step-59-b
Denis Davydov [Mon, 7 May 2018 19:13:22 +0000 (21:13 +0200)]
Merge pull request #6513 from kronbichler/fix-step-59-b

Finally fix step-59 formula

6 years agoFinally fix step-59 formula. 6513/head
Martin Kronbichler [Mon, 7 May 2018 18:23:49 +0000 (20:23 +0200)]
Finally fix step-59 formula.

6 years agoMerge pull request #6511 from kronbichler/fix-step-59
Wolfgang Bangerth [Mon, 7 May 2018 15:50:58 +0000 (10:50 -0500)]
Merge pull request #6511 from kronbichler/fix-step-59

Two minor updates to step-59

6 years agoMerge pull request #6508 from masterleinad/fix_gmsh_2
Matthias Maier [Mon, 7 May 2018 15:20:51 +0000 (10:20 -0500)]
Merge pull request #6508 from masterleinad/fix_gmsh_2

Fix gmsh/create_tria_02

6 years agoFix typo. 6511/head
Martin Kronbichler [Mon, 7 May 2018 15:17:09 +0000 (17:17 +0200)]
Fix typo.

6 years agoAdd changelog entry.
Martin Kronbichler [Mon, 7 May 2018 14:54:13 +0000 (16:54 +0200)]
Add changelog entry.

6 years agoTry to fix latex formula.
Martin Kronbichler [Mon, 7 May 2018 14:53:27 +0000 (16:53 +0200)]
Try to fix latex formula.

6 years agoAdded references to step-60 in header files.
Luca Heltai [Mon, 7 May 2018 12:29:24 +0000 (14:29 +0200)]
Added references to step-60 in header files.

6 years agoAdded entries in tutorial.h.in
Luca Heltai [Mon, 7 May 2018 12:17:31 +0000 (14:17 +0200)]
Added entries in tutorial.h.in

6 years agoAdded external cache.
Luca Heltai [Thu, 3 May 2018 15:21:13 +0000 (17:21 +0200)]
Added external cache.

6 years agoAdded possibility to read parameter from command line.
Luca Heltai [Wed, 2 May 2018 23:09:29 +0000 (01:09 +0200)]
Added possibility to read parameter from command line.

6 years agoWritten results, modified parameter file to use colorize
Giovanni Alzetta [Wed, 2 May 2018 20:44:46 +0000 (22:44 +0200)]
Written results, modified parameter file to use colorize

6 years agoAdded description of C and a solution example
Giovanni Alzetta [Wed, 2 May 2018 15:59:45 +0000 (17:59 +0200)]
Added description of C and a solution example

6 years agoCorrected refinement
Giovanni Alzetta [Wed, 2 May 2018 12:17:20 +0000 (14:17 +0200)]
Corrected refinement

6 years agoFirst commented version of step-60
Luca Heltai [Mon, 23 Apr 2018 15:44:31 +0000 (17:44 +0200)]
First commented version of step-60

Co-authored-by: Giovanni Alzetta <giovannialzetta@hotmail.it>
6 years agoOnly check for validity of the resulting Triangulation 6508/head
Daniel Arndt [Mon, 7 May 2018 09:20:10 +0000 (11:20 +0200)]
Only check for validity of the resulting Triangulation

6 years agoFix gmsh/create_tria_02
Daniel Arndt [Mon, 7 May 2018 00:20:12 +0000 (02:20 +0200)]
Fix gmsh/create_tria_02

6 years agoMerge pull request #6497 from tamiko/cosmetic_fix
Denis Davydov [Mon, 7 May 2018 05:13:50 +0000 (07:13 +0200)]
Merge pull request #6497 from tamiko/cosmetic_fix

CMake: Remove obsolete code from configure_slepc.cmake

6 years agoMerge pull request #6393 from masterleinad/new_fixes_10
Matthias Maier [Mon, 7 May 2018 03:45:43 +0000 (22:45 -0500)]
Merge pull request #6393 from masterleinad/new_fixes_10

Make sure not to attach a PropertyPool if not asked for

6 years agoMerge pull request #6475 from masterleinad/gcc_8_2
Matthias Maier [Mon, 7 May 2018 00:08:22 +0000 (19:08 -0500)]
Merge pull request #6475 from masterleinad/gcc_8_2

Fix the remaining gcc-8 warnings

6 years agoMerge pull request #6499 from drwells/actually-fix-local-to-global-index
Matthias Maier [Sun, 6 May 2018 23:28:44 +0000 (18:28 -0500)]
Merge pull request #6499 from drwells/actually-fix-local-to-global-index

Actually fix compute_local_to_global_vertex_index_map.

6 years agoFix the remaining gcc-8 warnings 6475/head
Daniel Arndt [Sat, 5 May 2018 00:29:04 +0000 (02:29 +0200)]
Fix the remaining gcc-8 warnings

6 years agoMerge pull request #6498 from tamiko/fix_caching_behavior
Daniel Arndt [Sun, 6 May 2018 21:16:38 +0000 (23:16 +0200)]
Merge pull request #6498 from tamiko/fix_caching_behavior

CMake: Unset cached results for C++11/14/17 detection if necessary

6 years agoMerge pull request #6496 from masterleinad/gcc_8_1
Matthias Maier [Sun, 6 May 2018 20:47:42 +0000 (15:47 -0500)]
Merge pull request #6496 from masterleinad/gcc_8_1

Default copy assignement in Tensor for non-Intel compilers

6 years agoActually fix compute_local_to_global_vertex_index_map. 6499/head
David Wells [Sun, 6 May 2018 19:57:18 +0000 (15:57 -0400)]
Actually fix compute_local_to_global_vertex_index_map.

The MPI types do not match the deal.II types, which is causes chaos when we use
32 bit indices.

6 years agoCMake: Unset cached results for C++11/14/17 detection if necessary 6498/head
Matthias Maier [Sun, 6 May 2018 17:23:50 +0000 (12:23 -0500)]
CMake: Unset cached results for C++11/14/17 detection if necessary

6 years agoCMake: Partially revert #6490
Matthias Maier [Sun, 6 May 2018 17:18:05 +0000 (12:18 -0500)]
CMake: Partially revert #6490

6 years agoCMake: Rerun checks if compiler configuration changes
Matthias Maier [Sun, 6 May 2018 17:12:40 +0000 (12:12 -0500)]
CMake: Rerun checks if compiler configuration changes

6 years agoCMake: cosmetic changes
Matthias Maier [Sun, 6 May 2018 16:39:55 +0000 (11:39 -0500)]
CMake: cosmetic changes

6 years agoCMake: Remove obsolete code from configure_slepc.cmake 6497/head
Matthias Maier [Sun, 6 May 2018 16:05:50 +0000 (11:05 -0500)]
CMake: Remove obsolete code from configure_slepc.cmake

Our DEAL_II_PACKAGE_HANDLE macro already takes care of that. No need to
do that by hand.

6 years agoMerge pull request #6495 from bangerth/step-10
Matthias Maier [Sun, 6 May 2018 15:47:55 +0000 (10:47 -0500)]
Merge pull request #6495 from bangerth/step-10

Add a reference to step-10.

6 years agoDefault copy assignement in Tensor for non-Intel compilers 6496/head
Daniel Arndt [Sun, 6 May 2018 15:25:28 +0000 (17:25 +0200)]
Default copy assignement in Tensor for non-Intel compilers

6 years agoMerge pull request #6493 from luca-heltai/fix-order-parsing-external-conf-master
Matthias Maier [Sun, 6 May 2018 15:20:57 +0000 (10:20 -0500)]
Merge pull request #6493 from luca-heltai/fix-order-parsing-external-conf-master

Move parsing of external.conf at the end.

6 years agoAdd a reference to step-10. 6495/head
Wolfgang Bangerth [Sun, 6 May 2018 13:20:34 +0000 (07:20 -0600)]
Add a reference to step-10.

While there, also rewrite a couple of sentences.

6 years agoMerge pull request #6484 from tamiko/add_a_script
David Wells [Sun, 6 May 2018 11:08:20 +0000 (07:08 -0400)]
Merge pull request #6484 from tamiko/add_a_script

Script: Add query_testsuite

6 years agoMerge pull request #6291 from kronbichler/step-59_tutorial
Martin Kronbichler [Sun, 6 May 2018 09:03:39 +0000 (11:03 +0200)]
Merge pull request #6291 from kronbichler/step-59_tutorial

Add step-59 tutorial program showing matrix-free DG

6 years agoMerge pull request #6491 from drwells/add-more-mpi-checks
Martin Kronbichler [Sun, 6 May 2018 08:58:17 +0000 (10:58 +0200)]
Merge pull request #6491 from drwells/add-more-mpi-checks

Add some more MPI checks.

6 years agoMerge pull request #6490 from drwells/fix-c++14-detection
Martin Kronbichler [Sun, 6 May 2018 08:57:24 +0000 (10:57 +0200)]
Merge pull request #6490 from drwells/fix-c++14-detection

Check for constexpr std::max with C++14.

6 years agoMake sure not to attach a PropertyPool if not asked for 6393/head
Daniel Arndt [Mon, 30 Apr 2018 00:07:17 +0000 (02:07 +0200)]
Make sure not to attach a PropertyPool if not asked for

6 years agoMove parsing of external.conf at the end. 6493/head
Luca Heltai [Sun, 6 May 2018 07:50:09 +0000 (09:50 +0200)]
Move parsing of external.conf at the end.

6 years agoMerge pull request #6489 from drwells/fix-test-buffer-1
Martin Kronbichler [Sun, 6 May 2018 06:33:02 +0000 (08:33 +0200)]
Merge pull request #6489 from drwells/fix-test-buffer-1

Fix a test to not write past the end of an array.

6 years agoScript: Add query_testsuite 6484/head
Matthias Maier [Sat, 5 May 2018 20:45:34 +0000 (15:45 -0500)]
Script: Add query_testsuite

This little helper script uses curl to download the current testsuite
results from

  https://cdash.kyomu.43-1.org/index.php?project=deal.II

and formats them via "column" into a nice (markdown compatible) table.
The script supports a regex to supplied via -r|--regex to either specify
a commit sha1, or a testing site name.

6 years agoMerge pull request #6487 from drwells/fix-local-to-global-index
Matthias Maier [Sun, 6 May 2018 04:05:13 +0000 (23:05 -0500)]
Merge pull request #6487 from drwells/fix-local-to-global-index

Fix compute_local_to_global_vertex_index_map.

6 years agoAdd some more MPI checks. 6491/head
David Wells [Sun, 6 May 2018 03:46:19 +0000 (23:46 -0400)]
Add some more MPI checks.

6 years agoCheck for constexpr std::max with C++14. 6490/head
David Wells [Sun, 6 May 2018 02:46:51 +0000 (22:46 -0400)]
Check for constexpr std::max with C++14.

6 years agoFix a test to not write past the end of an array. 6489/head
David Wells [Sun, 6 May 2018 02:02:31 +0000 (22:02 -0400)]
Fix a test to not write past the end of an array.

6 years agoMerge pull request #6483 from gassmoeller/fix_memory_access_in_particle_test
Matthias Maier [Sun, 6 May 2018 00:48:24 +0000 (19:48 -0500)]
Merge pull request #6483 from gassmoeller/fix_memory_access_in_particle_test

Fix invalid number of particle properties in a test

6 years agoFix compute_local_to_global_vertex_index_map. 6487/head
David Wells [Sat, 5 May 2018 23:15:10 +0000 (19:15 -0400)]
Fix compute_local_to_global_vertex_index_map.

The MPI_Allgather call should have the same value inputs for the second
and fifth arguments.

6 years agoMerge pull request #6486 from masterleinad/fix_depraction_warning_2
Matthias Maier [Sat, 5 May 2018 22:56:35 +0000 (17:56 -0500)]
Merge pull request #6486 from masterleinad/fix_depraction_warning_2

Fix warning text

6 years agoFix warning text 6486/head
Daniel Arndt [Sat, 5 May 2018 22:39:10 +0000 (00:39 +0200)]
Fix warning text

6 years agoMerge pull request #6480 from drwells/fix-overlapping-copy
Martin Kronbichler [Sat, 5 May 2018 20:22:53 +0000 (22:22 +0200)]
Merge pull request #6480 from drwells/fix-overlapping-copy

Fix a GCC8 warning: use std::move_backward instead of std::memmove

6 years agoFix test 6483/head
Rene Gassmoeller [Sat, 5 May 2018 20:06:54 +0000 (13:06 -0700)]
Fix test

6 years agoChange default number of properties
Rene Gassmoeller [Sat, 5 May 2018 19:41:15 +0000 (12:41 -0700)]
Change default number of properties

6 years agoFix invalid number of particle properties in a test
Rene Gassmoeller [Sat, 5 May 2018 18:38:38 +0000 (11:38 -0700)]
Fix invalid number of particle properties in a test

6 years agoMerge pull request #6481 from tamiko/undo_mess_1
Matthias Maier [Sat, 5 May 2018 18:40:19 +0000 (13:40 -0500)]
Merge pull request #6481 from tamiko/undo_mess_1

Revert "Default copy assignement in Tensor for non-Intel compilers"

6 years agoRevert "Default copy assignement in Tensor for non-Intel compilers" 6481/head
Matthias Maier [Sat, 5 May 2018 18:30:31 +0000 (13:30 -0500)]
Revert "Default copy assignement in Tensor for non-Intel compilers"

This reverts commit 171a9d03e87edcf7d455ecde576546777c112b45.

6 years agoMerge pull request #6474 from masterleinad/gcc_8_1
Matthias Maier [Sat, 5 May 2018 17:38:35 +0000 (12:38 -0500)]
Merge pull request #6474 from masterleinad/gcc_8_1

Default copy assignement in Tensor for non-Intel compilers

6 years agoFix a GCC8 warning. 6480/head
David Wells [Sat, 5 May 2018 17:17:23 +0000 (13:17 -0400)]
Fix a GCC8 warning.

GCC warns that these types are not trivally copyable so we should not use
std::memmove. We cannot use std::move either since the beginning of the new
range may intersect the old range. Hence: use std::move_backward to copy from
the end, which cannot overlap.

6 years agoMerge pull request #6476 from jppelteret/fix_gmsh_01
Matthias Maier [Sat, 5 May 2018 16:33:12 +0000 (11:33 -0500)]
Merge pull request #6476 from jppelteret/fix_gmsh_01

Add inclusion guards around instantiation that requires OpenCascade.

6 years agoMerge pull request #6465 from tjhei/use_mkstemp
Matthias Maier [Sat, 5 May 2018 14:35:32 +0000 (09:35 -0500)]
Merge pull request #6465 from tjhei/use_mkstemp

use mkstemp instead of tmpnam

6 years agoMerge pull request #6460 from tamiko/fix_tests
Matthias Maier [Sat, 5 May 2018 14:35:02 +0000 (09:35 -0500)]
Merge pull request #6460 from tamiko/fix_tests

Update test outputs

6 years agoAdd inclusion guards around instantiation that requires OpenCascade. 6476/head
Jean-Paul Pelteret [Sat, 5 May 2018 14:31:29 +0000 (16:31 +0200)]
Add inclusion guards around instantiation that requires OpenCascade.

6 years agoDefault copy assignement in Tensor for non-Intel compilers 6474/head
Daniel Arndt [Fri, 4 May 2018 16:49:55 +0000 (18:49 +0200)]
Default copy assignement in Tensor for non-Intel compilers

6 years agoMerge pull request #6457 from tamiko/update_examples
Matthias Maier [Sat, 5 May 2018 02:55:35 +0000 (21:55 -0500)]
Merge pull request #6457 from tamiko/update_examples

Require the current version of deal.II.

6 years agouse std::tmpfile instead of tmpnam 6465/head
Timo Heister [Sat, 5 May 2018 02:00:43 +0000 (22:00 -0400)]
use std::tmpfile instead of tmpnam


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