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dealii.git
7 years agoMerge pull request #5148 from tamiko/make_dealii_great_again
Luca Heltai [Wed, 27 Sep 2017 14:01:28 +0000 (16:01 +0200)]
Merge pull request #5148 from tamiko/make_dealii_great_again

Fix FindASSIMP.cmake and improve DEAL_II_DISABLE_EXTRA_DIAGNOSTICS

7 years agoMerge pull request #5162 from masterleinad/restrict_tests_p4est
Luca Heltai [Wed, 27 Sep 2017 14:00:45 +0000 (16:00 +0200)]
Merge pull request #5162 from masterleinad/restrict_tests_p4est

Restrict tests requiring p4est

7 years agoMerge pull request #5159 from bangerth/doc-update
Luca Heltai [Wed, 27 Sep 2017 12:51:17 +0000 (14:51 +0200)]
Merge pull request #5159 from bangerth/doc-update

Update documentation in VectorMemory and derived classes.

7 years agoMerge pull request #5163 from masterleinad/unused_param_param_acceptor
Daniel Arndt [Wed, 27 Sep 2017 12:01:35 +0000 (14:01 +0200)]
Merge pull request #5163 from masterleinad/unused_param_param_acceptor

Remove unused parameter

7 years agoMerge pull request #5153 from bangerth/avoid-raw-pointers
Luca Heltai [Wed, 27 Sep 2017 11:04:23 +0000 (13:04 +0200)]
Merge pull request #5153 from bangerth/avoid-raw-pointers

Avoid raw pointers in SUNDIALS IDA interfaces.

7 years agoMerge pull request #5161 from drwells/add-deal-ii-with-petsc-with-hypre
Denis Davydov [Wed, 27 Sep 2017 11:02:09 +0000 (13:02 +0200)]
Merge pull request #5161 from drwells/add-deal-ii-with-petsc-with-hypre

Add DEAL_II_PETSC_WITH_HYPRE.

7 years agoRemove unused parameter 5163/head
Daniel Arndt [Wed, 27 Sep 2017 10:16:51 +0000 (12:16 +0200)]
Remove unused parameter

7 years agoRestrict tests requiring p4est 5162/head
Daniel Arndt [Wed, 27 Sep 2017 10:12:40 +0000 (12:12 +0200)]
Restrict tests requiring p4est

7 years agoAdd DEAL_II_WITH_PETSC_WITH_HYPRE. 5161/head
David Wells [Wed, 27 Sep 2017 00:34:14 +0000 (20:34 -0400)]
Add DEAL_II_WITH_PETSC_WITH_HYPRE.

This does not change any functionality but does make it easier to
disable (or enable) tests based on the availability of hypre within
PETSc.

7 years agoMerge pull request #4994 from jppelteret/petsc_mumps
David Wells [Tue, 26 Sep 2017 22:04:57 +0000 (18:04 -0400)]
Merge pull request #4994 from jppelteret/petsc_mumps

Setup and use DEAL_II_PETSC_WITH_MUMPS in PETSc solver.

7 years agoMerge pull request #5158 from bangerth/avoid-raw-pointers-2
Daniel Arndt [Tue, 26 Sep 2017 21:55:15 +0000 (23:55 +0200)]
Merge pull request #5158 from bangerth/avoid-raw-pointers-2

Avoid raw pointers in favor of VectorMemory::Pointer in SolverQMRS.

7 years agoUpdate documentation in VectorMemory and derived classes. 5159/head
Wolfgang Bangerth [Tue, 26 Sep 2017 19:08:49 +0000 (13:08 -0600)]
Update documentation in VectorMemory and derived classes.

7 years agoAvoid raw pointers in favor of VectorMemory::Pointer in SolverQMRS. 5158/head
Wolfgang Bangerth [Tue, 26 Sep 2017 18:59:47 +0000 (12:59 -0600)]
Avoid raw pointers in favor of VectorMemory::Pointer in SolverQMRS.

7 years agoMerge pull request #5116 from luca-heltai/parameter-acceptor
Luca Heltai [Tue, 26 Sep 2017 17:27:31 +0000 (19:27 +0200)]
Merge pull request #5116 from luca-heltai/parameter-acceptor

ParameterAcceptor.

7 years agoMerge pull request #5157 from tjhei/step56-template-naming
Wolfgang Bangerth [Tue, 26 Sep 2017 17:20:11 +0000 (11:20 -0600)]
Merge pull request #5157 from tjhei/step56-template-naming

minor: step-56: consistent template arg naming

7 years agoAdded initialize with input_stream, and optional prm. 5116/head
Luca Heltai [Mon, 25 Sep 2017 11:49:13 +0000 (13:49 +0200)]
Added initialize with input_stream, and optional prm.

7 years agoAdded default prm to add_parameter().
Luca Heltai [Wed, 20 Sep 2017 15:04:15 +0000 (17:04 +0200)]
Added default prm to add_parameter().

7 years agoChangelog.
Luca Heltai [Wed, 20 Sep 2017 12:22:04 +0000 (14:22 +0200)]
Changelog.

7 years agoTest for path handling.
Luca Heltai [Wed, 20 Sep 2017 12:13:02 +0000 (14:13 +0200)]
Test for path handling.

7 years agoTest failing custom format in output.
Luca Heltai [Wed, 20 Sep 2017 10:24:57 +0000 (12:24 +0200)]
Test failing custom format in output.

7 years agoTest tex output.
Luca Heltai [Wed, 20 Sep 2017 10:05:59 +0000 (12:05 +0200)]
Test tex output.

7 years agoTest xml format.
Luca Heltai [Wed, 20 Sep 2017 10:01:30 +0000 (12:01 +0200)]
Test xml format.

7 years agoTest global section names.
Luca Heltai [Wed, 20 Sep 2017 09:52:37 +0000 (11:52 +0200)]
Test global section names.

7 years agoTest with Point<dim>.
Luca Heltai [Wed, 20 Sep 2017 09:46:58 +0000 (11:46 +0200)]
Test with Point<dim>.

7 years agoTest Using add parameter.
Luca Heltai [Wed, 20 Sep 2017 09:43:43 +0000 (11:43 +0200)]
Test Using add parameter.

7 years agoParameterAcceptor class.
Luca Heltai [Wed, 20 Sep 2017 09:27:19 +0000 (11:27 +0200)]
ParameterAcceptor class.

7 years agominor: step-56: consistent template arg naming 5157/head
Timo Heister [Tue, 26 Sep 2017 17:18:47 +0000 (13:18 -0400)]
minor: step-56: consistent template arg naming

7 years agoMerge pull request #5152 from bangerth/minor-updates
Timo Heister [Tue, 26 Sep 2017 01:20:10 +0000 (21:20 -0400)]
Merge pull request #5152 from bangerth/minor-updates

Better document MPILogInitAll.

7 years agoAvoid raw pointers in SUNDIALS IDA interfaces. 5153/head
Wolfgang Bangerth [Tue, 26 Sep 2017 00:35:52 +0000 (18:35 -0600)]
Avoid raw pointers in SUNDIALS IDA interfaces.

7 years agoBetter document MPILogInitAll. 5152/head
Wolfgang Bangerth [Mon, 25 Sep 2017 23:48:12 +0000 (17:48 -0600)]
Better document MPILogInitAll.

7 years agoAdd another warning to DEAL_II_DISABLE_EXTRA_DIAGNOSTICS 5148/head
Matthias Maier [Mon, 25 Sep 2017 21:43:50 +0000 (16:43 -0500)]
Add another warning to DEAL_II_DISABLE_EXTRA_DIAGNOSTICS

7 years agoCMake: Make FindASSIMP.cmake more pretty
Matthias Maier [Mon, 25 Sep 2017 21:35:33 +0000 (16:35 -0500)]
CMake: Make FindASSIMP.cmake more pretty

 - use DEAL_II_FIND_PATH to set up include directory
 - don't use tabs :-)

7 years agoMerge pull request #5146 from masterleinad/fix_multigrid_lapack
David Wells [Mon, 25 Sep 2017 19:59:16 +0000 (15:59 -0400)]
Merge pull request #5146 from masterleinad/fix_multigrid_lapack

Restrict multigrid tests to only run with LAPACK

7 years agoMerge pull request #5147 from masterleinad/fix_utilities
David Wells [Mon, 25 Sep 2017 19:58:55 +0000 (15:58 -0400)]
Merge pull request #5147 from masterleinad/fix_utilities

Restrict lac/utilities_02 to only run with LAPACK

7 years agoMerge pull request #5140 from masterleinad/array_view_cbegin
David Wells [Mon, 25 Sep 2017 19:58:01 +0000 (15:58 -0400)]
Merge pull request #5140 from masterleinad/array_view_cbegin

Introduce ArrayView::cbegin and ArrayView::cend

7 years agoRestrict lac/utilities_02 to only run with LAPACK 5147/head
Daniel Arndt [Mon, 25 Sep 2017 12:48:41 +0000 (14:48 +0200)]
Restrict lac/utilities_02 to only run with LAPACK

7 years agoRestrict multigrid tests to only run with LAPACK 5146/head
Daniel Arndt [Mon, 25 Sep 2017 12:27:34 +0000 (14:27 +0200)]
Restrict multigrid tests to only run with LAPACK

7 years agoMerge pull request #5144 from tamiko/disable_tests
Daniel Arndt [Mon, 25 Sep 2017 08:29:00 +0000 (10:29 +0200)]
Merge pull request #5144 from tamiko/disable_tests

Temporarily disable two tests

7 years agoTemporarily disable two tests 5144/head
Matthias Maier [Mon, 25 Sep 2017 04:38:20 +0000 (23:38 -0500)]
Temporarily disable two tests

Closes #5126
Closes #5128
In reference to #4857

7 years agoMerge pull request #5124 from GivAlz/BBoxMerge
Wolfgang Bangerth [Mon, 25 Sep 2017 01:39:32 +0000 (19:39 -0600)]
Merge pull request #5124 from GivAlz/BBoxMerge

Added functions merge_with and volume to BoundingBox

7 years agoMerge pull request #5143 from drwells/move-vector-length
Wolfgang Bangerth [Mon, 25 Sep 2017 01:30:23 +0000 (19:30 -0600)]
Merge pull request #5143 from drwells/move-vector-length

Move a function out of an anonymous namespace.

7 years agoMerge pull request #5142 from davydden/oversubscribe
Wolfgang Bangerth [Mon, 25 Sep 2017 00:57:25 +0000 (18:57 -0600)]
Merge pull request #5142 from davydden/oversubscribe

explicitly oversubscribe with MPI

7 years agoMerge pull request #5135 from davydden/python_wrappers_warnings
Bruno Turcksin [Mon, 25 Sep 2017 00:15:28 +0000 (20:15 -0400)]
Merge pull request #5135 from davydden/python_wrappers_warnings

fix Python wrappers warnings

7 years agoMerge pull request #5137 from davydden/missing_instantiations_2
David Wells [Sun, 24 Sep 2017 21:00:00 +0000 (17:00 -0400)]
Merge pull request #5137 from davydden/missing_instantiations_2

add missing instantiations of DataOutBase::write_filtered_data

7 years agoMove a function out of an anonymous namespace. 5143/head
David Wells [Sun, 24 Sep 2017 19:38:52 +0000 (15:38 -0400)]
Move a function out of an anonymous namespace.

We only call this function in debug mode right now, so the compiler
complains (in release mode) that we have an unused function.

7 years agoMerge pull request #5134 from davydden/slepc_fix_test
Denis Davydov [Sun, 24 Sep 2017 16:54:19 +0000 (18:54 +0200)]
Merge pull request #5134 from davydden/slepc_fix_test

increase precision in Slepc SHEP test to avoid missed eigenpairs

7 years agoexplicitly oversubscribe with MPI 5142/head
Denis Davydov [Sun, 24 Sep 2017 16:09:48 +0000 (18:09 +0200)]
explicitly oversubscribe with MPI

7 years agoMerge pull request #5136 from davydden/missing_instantiations_1
Daniel Arndt [Sun, 24 Sep 2017 13:00:49 +0000 (15:00 +0200)]
Merge pull request #5136 from davydden/missing_instantiations_1

add missing instantiation for ConstraintMatrix::distribute_local_to_g…

7 years agoMerge pull request #5129 from davydden/fe_move_tests
Daniel Arndt [Sun, 24 Sep 2017 10:25:47 +0000 (12:25 +0200)]
Merge pull request #5129 from davydden/fe_move_tests

additional output for fe_move on macOS

7 years agoChangelog entry 5140/head
Daniel Arndt [Sun, 24 Sep 2017 09:30:48 +0000 (11:30 +0200)]
Changelog entry

7 years agoIntroduce ArrayView::cbegin and ArrayView::cend
Daniel Arndt [Sun, 24 Sep 2017 09:15:00 +0000 (11:15 +0200)]
Introduce ArrayView::cbegin and ArrayView::cend

7 years agoMerge branch 'master' into BBoxMerge 5124/head
Giovanni Alzetta [Sun, 24 Sep 2017 09:08:01 +0000 (11:08 +0200)]
Merge branch 'master' into BBoxMerge

7 years agoAdded functions merge_with and volume to BoundingBox
Giovanni Alzetta [Fri, 22 Sep 2017 11:31:47 +0000 (11:31 +0000)]
Added functions merge_with and volume to BoundingBox

7 years agoadd missing instantiation for ConstraintMatrix::distribute_local_to_global() 5136/head
Denis Davydov [Sun, 24 Sep 2017 06:42:46 +0000 (08:42 +0200)]
add missing instantiation for ConstraintMatrix::distribute_local_to_global()

7 years agoadd missing instantiations of DataOutBase::write_filtered_data 5137/head
Denis Davydov [Sun, 24 Sep 2017 07:03:44 +0000 (09:03 +0200)]
add missing instantiations of DataOutBase::write_filtered_data

7 years agoremove unused variable in TriangulationWrapper 5135/head
Denis Davydov [Sun, 24 Sep 2017 05:04:54 +0000 (07:04 +0200)]
remove unused variable in TriangulationWrapper

7 years agofix a warning in python wrappers
Denis Davydov [Sun, 24 Sep 2017 05:04:09 +0000 (07:04 +0200)]
fix a warning in python wrappers

7 years agoincrease precision in Slepc SHEP test to avoid missed eigenpairs 5134/head
Denis Davydov [Sat, 23 Sep 2017 21:40:39 +0000 (23:40 +0200)]
increase precision in Slepc SHEP test to avoid missed eigenpairs

7 years agoadditional output for fe_move on macOS 5129/head
Denis Davydov [Sat, 23 Sep 2017 21:16:02 +0000 (23:16 +0200)]
additional output for fe_move on macOS

7 years agoCreated class Bounding Box and its routine point_inside
Giovanni Alzetta [Sun, 17 Sep 2017 23:25:10 +0000 (23:25 +0000)]
Created class Bounding Box and its routine point_inside

7 years agoMerge pull request #5122 from bangerth/fix-warning
Daniel Arndt [Fri, 22 Sep 2017 09:37:14 +0000 (11:37 +0200)]
Merge pull request #5122 from bangerth/fix-warning

Suppress a warning about an unused argument.

7 years agoSuppress a warning about an unused argument. 5122/head
Wolfgang Bangerth [Thu, 21 Sep 2017 20:06:09 +0000 (14:06 -0600)]
Suppress a warning about an unused argument.

7 years agoMerge pull request #5121 from bangerth/const-args
Timo Heister [Thu, 21 Sep 2017 17:17:29 +0000 (13:17 -0400)]
Merge pull request #5121 from bangerth/const-args

Make some function arguments 'const'.

7 years agoMake some function arguments 'const'. 5121/head
Wolfgang Bangerth [Thu, 21 Sep 2017 15:46:06 +0000 (09:46 -0600)]
Make some function arguments 'const'.

7 years agoMerge pull request #5095 from luca-heltai/assimp-detection
Wolfgang Bangerth [Thu, 21 Sep 2017 14:48:58 +0000 (08:48 -0600)]
Merge pull request #5095 from luca-heltai/assimp-detection

Assimp support and GridIn::read_assimp.

7 years agoMerge pull request #5101 from bangerth/more-hp-work
Martin Kronbichler [Thu, 21 Sep 2017 11:03:30 +0000 (13:03 +0200)]
Merge pull request #5101 from bangerth/more-hp-work

Add a test.

7 years agoMerge pull request #5072 from luca-heltai/triangulation-info-cache
Luca Heltai [Thu, 21 Sep 2017 08:18:23 +0000 (10:18 +0200)]
Merge pull request #5072 from luca-heltai/triangulation-info-cache

GridTools::Cache (was TriangulationInfoCache).

7 years agoFixed minor issues. 5072/head
Luca Heltai [Thu, 21 Sep 2017 08:02:56 +0000 (10:02 +0200)]
Fixed minor issues.

7 years agoMerge pull request #5077 from danshapero/examples-c++11
Wolfgang Bangerth [Wed, 20 Sep 2017 21:35:49 +0000 (15:35 -0600)]
Merge pull request #5077 from danshapero/examples-c++11

use range-based for and other C++11 features in tutorials

7 years agoUsing range-based for loops in examples 2-5 5077/head
danshapero [Mon, 18 Sep 2017 18:36:35 +0000 (11:36 -0700)]
Using range-based for loops in examples 2-5

7 years agoMerge pull request #5090 from bangerth/fesystem
Daniel Arndt [Wed, 20 Sep 2017 19:06:38 +0000 (21:06 +0200)]
Merge pull request #5090 from bangerth/fesystem

Be more generous in what types we allow in the FESystem(...) constructor

7 years agoUsing range-based for loop in example 1
danshapero [Wed, 13 Sep 2017 23:37:37 +0000 (16:37 -0700)]
Using range-based for loop in example 1

7 years agoMerge pull request #4857 from tamiko/generalized_interpolation
Wolfgang Bangerth [Wed, 20 Sep 2017 17:55:03 +0000 (11:55 -0600)]
Merge pull request #4857 from tamiko/generalized_interpolation

Generalized support points / interpolation

7 years agoMerge pull request #5115 from masterleinad/fix_serialization
Daniel Arndt [Wed, 20 Sep 2017 15:30:59 +0000 (17:30 +0200)]
Merge pull request #5115 from masterleinad/fix_serialization

Fix serialization of DoFHandler and Triangulation for clang-5

7 years agoMerge pull request #5111 from bangerth/const-args
Daniel Arndt [Wed, 20 Sep 2017 15:22:00 +0000 (17:22 +0200)]
Merge pull request #5111 from bangerth/const-args

Marks some input arguments as 'const'.

7 years agoFix serialization of DoFHandler and Triangulation for clang-5 5115/head
Daniel Arndt [Wed, 20 Sep 2017 10:15:34 +0000 (12:15 +0200)]
Fix serialization of DoFHandler and Triangulation for clang-5

7 years agoWB's comments part II. 5095/head
Luca Heltai [Wed, 20 Sep 2017 07:40:28 +0000 (09:40 +0200)]
WB's comments part II.

7 years agoMerge pull request #5104 from masterleinad/doc_copy_to_mg
Timo Heister [Tue, 19 Sep 2017 17:41:17 +0000 (13:41 -0400)]
Merge pull request #5104 from masterleinad/doc_copy_to_mg

Improve documentation for MultigridTransfer::copy_to_mg

7 years agoMerge pull request #5113 from masterleinad/remove_unused_reserve_space
Wolfgang Bangerth [Tue, 19 Sep 2017 16:49:55 +0000 (10:49 -0600)]
Merge pull request #5113 from masterleinad/remove_unused_reserve_space

Remove unused private function DoFHandler::reserve_space

7 years agoRemove unused private function DoFHandler::reserve_space 5113/head
Daniel Arndt [Tue, 19 Sep 2017 15:40:42 +0000 (17:40 +0200)]
Remove unused private function DoFHandler::reserve_space

7 years agoMark some input arguments as 'const'. 5111/head
Wolfgang Bangerth [Tue, 19 Sep 2017 15:10:08 +0000 (09:10 -0600)]
Mark some input arguments as 'const'.

7 years agoImprove documentation for copy_to_mg 5104/head
Daniel Arndt [Mon, 18 Sep 2017 13:58:09 +0000 (15:58 +0200)]
Improve documentation for copy_to_mg

7 years agoMerge pull request #5105 from Rombur/cuda_documentation
Denis Davydov [Tue, 19 Sep 2017 08:11:38 +0000 (10:11 +0200)]
Merge pull request #5105 from Rombur/cuda_documentation

Add documentation to enable CUDA support

7 years agoRenamed GridTools::CacheFlags -> GridTools::CacheUpdateFlags
Luca Heltai [Tue, 19 Sep 2017 07:54:45 +0000 (09:54 +0200)]
Renamed GridTools::CacheFlags -> GridTools::CacheUpdateFlags

7 years agoUpdated documentation
Luca Heltai [Tue, 19 Sep 2017 07:32:56 +0000 (09:32 +0200)]
Updated documentation

7 years agoMerge pull request #5103 from bangerth/fix-warning
Daniel Arndt [Mon, 18 Sep 2017 20:09:21 +0000 (22:09 +0200)]
Merge pull request #5103 from bangerth/fix-warning

Avoid a warning about an unused argument.

7 years agoWB's comments.
Luca Heltai [Mon, 18 Sep 2017 17:46:31 +0000 (19:46 +0200)]
WB's comments.

7 years agoMerge pull request #5098 from drwells/add-sundials-copy-test
Luca Heltai [Mon, 18 Sep 2017 17:27:51 +0000 (19:27 +0200)]
Merge pull request #5098 from drwells/add-sundials-copy-test

Add a test for copying SUNDIALS vectors.

7 years agoMerge pull request #5099 from drwells/remove-vector-slice-1
David Wells [Mon, 18 Sep 2017 15:22:19 +0000 (11:22 -0400)]
Merge pull request #5099 from drwells/remove-vector-slice-1

Remove VectorSlice from some internal functions.

7 years agoAdd documentation to enable CUDA support 5105/head
Bruno Turcksin [Sun, 17 Sep 2017 04:04:04 +0000 (00:04 -0400)]
Add documentation to enable CUDA support

7 years agoMerge pull request #5102 from bangerth/fix-test
Daniel Arndt [Mon, 18 Sep 2017 14:04:54 +0000 (16:04 +0200)]
Merge pull request #5102 from bangerth/fix-test

Further increase test accuracy.

7 years agoAvoid a warning about an unused argument. 5103/head
Wolfgang Bangerth [Mon, 18 Sep 2017 13:57:26 +0000 (07:57 -0600)]
Avoid a warning about an unused argument.

7 years agoFurther increase test accuracy. 5102/head
Wolfgang Bangerth [Mon, 18 Sep 2017 13:55:58 +0000 (07:55 -0600)]
Further increase test accuracy.

7 years agoAdd an hp-ified version of tests/mpi/step-40. 5101/head
Wolfgang Bangerth [Wed, 13 Sep 2017 21:13:24 +0000 (15:13 -0600)]
Add an hp-ified version of tests/mpi/step-40.

The output is identical to the original, non-hp version.

7 years agoMerge pull request #5078 from GivAlz/master
Daniel Arndt [Mon, 18 Sep 2017 08:20:36 +0000 (10:20 +0200)]
Merge pull request #5078 from GivAlz/master

Adding Bounding Boxes class to Base

7 years agoMerge pull request #5093 from bangerth/hp-fixes
Martin Kronbichler [Mon, 18 Sep 2017 07:38:50 +0000 (09:38 +0200)]
Merge pull request #5093 from bangerth/hp-fixes

Provide DoFAccessor::set_dof_indices() for hp.

7 years agoAdd a test. 5090/head
Wolfgang Bangerth [Thu, 14 Sep 2017 22:04:59 +0000 (16:04 -0600)]
Add a test.

7 years agoAllow not specifying the multiplicity in the FESystem constructor.
Wolfgang Bangerth [Thu, 14 Sep 2017 20:41:08 +0000 (14:41 -0600)]
Allow not specifying the multiplicity in the FESystem constructor.

7 years agoMake an argument 'const'.
Wolfgang Bangerth [Thu, 14 Sep 2017 19:33:32 +0000 (13:33 -0600)]
Make an argument 'const'.

7 years agoRename template type and argument name to better reflect their purpose.
Wolfgang Bangerth [Thu, 14 Sep 2017 19:30:05 +0000 (13:30 -0600)]
Rename template type and argument name to better reflect their purpose.


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