https://gitweb.dealii.org/

Guido Kanschat [Tue, 15 Feb 2011 15:00:53 +0000 (15:00 +0000)]

move meshworker to new integrators directory

git-svn-id: https://svn.dealii.org/trunk@23360 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Tue, 15 Feb 2011 14:58:58 +0000 (14:58 +0000)]

remove unused parameter

git-svn-id: https://svn.dealii.org/trunk@23359 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 14 Feb 2011 19:53:13 +0000 (19:53 +0000)]

Minor text fix.

git-svn-id: https://svn.dealii.org/trunk@23358 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Mon, 14 Feb 2011 08:58:41 +0000 (08:58 +0000)]

Fix hyperlink

git-svn-id: https://svn.dealii.org/trunk@23357 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Feb 2011 23:10:30 +0000 (23:10 +0000)]

Make condition work also if
parameters.graphical_output_interval==1. Fix possible range for this parameter.

git-svn-id: https://svn.dealii.org/trunk@23353 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Feb 2011 23:08:16 +0000 (23:08 +0000)]

Also produce output after the last time step.

git-svn-id: https://svn.dealii.org/trunk@23352 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Feb 2011 22:37:10 +0000 (22:37 +0000)]

Make the number of time steps between mesh refinement a parameter.

git-svn-id: https://svn.dealii.org/trunk@23351 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Feb 2011 22:31:07 +0000 (22:31 +0000)]

Abort the program if the input file could not be read.

git-svn-id: https://svn.dealii.org/trunk@23350 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Feb 2011 19:18:13 +0000 (19:18 +0000)]

Change the formula to place interior nodes in the new part of the GridGenerator::hyper_shell function.

git-svn-id: https://svn.dealii.org/trunk@23349 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sun, 13 Feb 2011 16:28:29 +0000 (16:28 +0000)]

step-32: fix extrapolation. It triggered an exception in debug mode about sadd() with ghosted vectors.

git-svn-id: https://svn.dealii.org/trunk@23348 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 13 Feb 2011 05:03:08 +0000 (05:03 +0000)]

Use a better coarse mesh.

git-svn-id: https://svn.dealii.org/trunk@23347 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 12 Feb 2011 14:09:17 +0000 (14:09 +0000)]

Fix file name.

git-svn-id: https://svn.dealii.org/trunk@23346 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 12 Feb 2011 13:59:24 +0000 (13:59 +0000)]

Add another couple pictures.

git-svn-id: https://svn.dealii.org/trunk@23345 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 12 Feb 2011 13:57:27 +0000 (13:57 +0000)]

Crop.

git-svn-id: https://svn.dealii.org/trunk@23344 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 12 Feb 2011 13:56:44 +0000 (13:56 +0000)]

Add.

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Wolfgang Bangerth [Sat, 12 Feb 2011 13:55:42 +0000 (13:55 +0000)]

Document GridGenerator::hyper_shell.

git-svn-id: https://svn.dealii.org/trunk@23342 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 12 Feb 2011 13:54:30 +0000 (13:54 +0000)]

Adjust output.

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Wolfgang Bangerth [Sat, 12 Feb 2011 13:53:51 +0000 (13:53 +0000)]

Fix hypershell 96.

git-svn-id: https://svn.dealii.org/trunk@23340 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 16:03:48 +0000 (16:03 +0000)]

First version of the 96-cell hypersphere. Doesn't work completely yet, but a start to finish while I'm on campus later.

git-svn-id: https://svn.dealii.org/trunk@23339 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 15:45:38 +0000 (15:45 +0000)]

Override qmake's default for XCode on Mac OS X.

git-svn-id: https://svn.dealii.org/trunk@23338 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 15:08:30 +0000 (15:08 +0000)]

Another test.

git-svn-id: https://svn.dealii.org/trunk@23337 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 15:04:05 +0000 (15:04 +0000)]

Add test.

git-svn-id: https://svn.dealii.org/trunk@23336 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 14:52:44 +0000 (14:52 +0000)]

Fix poor design of test: opening a file twice and writing into both streams is not likely to lead to anything good.

git-svn-id: https://svn.dealii.org/trunk@23335 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 14:47:38 +0000 (14:47 +0000)]

Add comment.

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Wolfgang Bangerth [Fri, 11 Feb 2011 04:18:50 +0000 (04:18 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@23333 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 04:06:56 +0000 (04:06 +0000)]

Some more minor edits.

git-svn-id: https://svn.dealii.org/trunk@23332 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 04:04:23 +0000 (04:04 +0000)]

Minor edits.

git-svn-id: https://svn.dealii.org/trunk@23331 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 03:53:35 +0000 (03:53 +0000)]

Disallow a whole bunch of functions that modify vectors if we have
ghosted elements.

git-svn-id: https://svn.dealii.org/trunk@23330 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 03:43:51 +0000 (03:43 +0000)]

Modify the implementation of second_invariant. The old implementation
was difficult to understand (thought correct) and certainly not efficient.

git-svn-id: https://svn.dealii.org/trunk@23329 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 03:40:45 +0000 (03:40 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@23328 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 03:19:07 +0000 (03:19 +0000)]

Set properties correctly.

git-svn-id: https://svn.dealii.org/trunk@23327 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 03:17:54 +0000 (03:17 +0000)]

Add new test.

git-svn-id: https://svn.dealii.org/trunk@23326 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 11 Feb 2011 02:49:29 +0000 (02:49 +0000)]

Fix a bug and add a testcase for VectorTools::compute_mean_value.

git-svn-id: https://svn.dealii.org/trunk@23325 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 10 Feb 2011 15:19:06 +0000 (15:19 +0000)]

Documentation updates.

git-svn-id: https://svn.dealii.org/trunk@23324 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 10 Feb 2011 13:44:29 +0000 (13:44 +0000)]

Use 'qmake -unix', not 'qmake --unix'.

git-svn-id: https://svn.dealii.org/trunk@23323 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 10 Feb 2011 00:03:00 +0000 (00:03 +0000)]

Use 'qmake --unix' so that we get a unix makefile even on Mac OS X.

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Wolfgang Bangerth [Wed, 9 Feb 2011 23:59:36 +0000 (23:59 +0000)]

Use 'mktemp' in a portable way: on OS X, mktemp requires a template argument,
but if we give a template, linux requires providing a path. So specify a
template, and use ${TMPDIR:-/tmp} as this path (i.e. use TMPDIR if it is set,
and /tmp otherwise).

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Wolfgang Bangerth [Wed, 9 Feb 2011 17:25:38 +0000 (17:25 +0000)]

Do not only check for presence of the libz.so file, but also for zlib.h.

git-svn-id: https://svn.dealii.org/trunk@23320 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 17:18:06 +0000 (17:18 +0000)]

Minor edit.

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Wolfgang Bangerth [Wed, 9 Feb 2011 17:02:49 +0000 (17:02 +0000)]

Write a results section.

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Wolfgang Bangerth [Wed, 9 Feb 2011 16:56:39 +0000 (16:56 +0000)]

Finish writing.

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Wolfgang Bangerth [Wed, 9 Feb 2011 15:46:38 +0000 (15:46 +0000)]

Give a bit of an introduction to the library's documentation.

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Wolfgang Bangerth [Wed, 9 Feb 2011 15:39:57 +0000 (15:39 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@23315 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 15:30:57 +0000 (15:30 +0000)]

Compute restriction and prolongation matrices for DGQ elements also if dim<spacedim.

git-svn-id: https://svn.dealii.org/trunk@23314 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 15:26:38 +0000 (15:26 +0000)]

Say a couple more things.

git-svn-id: https://svn.dealii.org/trunk@23313 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 15:08:04 +0000 (15:08 +0000)]

Remove some commented out code that should have been removed months ago.

git-svn-id: https://svn.dealii.org/trunk@23312 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 14:39:18 +0000 (14:39 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@23311 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 14:27:12 +0000 (14:27 +0000)]

Document previous patch.

git-svn-id: https://svn.dealii.org/trunk@23310 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 14:19:48 +0000 (14:19 +0000)]

Set properties correctly.

git-svn-id: https://svn.dealii.org/trunk@23309 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 14:15:50 +0000 (14:15 +0000)]

Fix a problem with refining surfaces.

git-svn-id: https://svn.dealii.org/trunk@23308 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 9 Feb 2011 13:29:40 +0000 (13:29 +0000)]

Fix number.

git-svn-id: https://svn.dealii.org/trunk@23307 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Feb 2011 21:23:51 +0000 (21:23 +0000)]

More of an intro than just a sentence.

git-svn-id: https://svn.dealii.org/trunk@23306 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 8 Feb 2011 20:54:56 +0000 (20:54 +0000)]

So if we really need to introduce CompressedSparsityPattern already in
step-2 (which I don't think we need), then shouldn't we at least do
this in both places where SparsityPattern is used?

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Wolfgang Bangerth [Tue, 8 Feb 2011 15:15:03 +0000 (15:15 +0000)]

Add a paragraph of possible extensions.

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Wolfgang Bangerth [Tue, 8 Feb 2011 14:41:04 +0000 (14:41 +0000)]

Use a slightly different preconditioner: the diagonal part of the
eps:eps form, instead of the (already diagonal) grad:grad form. This
doesn't make a difference here, but cut the number of inner iterations
in Jennifer's (nonlinear) testcase using BiCGStab by approximately 1/4
(e.g. from 40 to 30).

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Wolfgang Bangerth [Mon, 7 Feb 2011 16:31:37 +0000 (16:31 +0000)]

Make VectorTools::compute_mean_value and VectorTools::integrate_difference also work in parallel.

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Wolfgang Bangerth [Sun, 6 Feb 2011 22:40:00 +0000 (22:40 +0000)]

Grammar fail.

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Timo Heister [Sun, 6 Feb 2011 20:38:55 +0000 (20:38 +0000)]

step-32: rescale 3d starting value to avoid artifacts at the +/- z poles

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Wolfgang Bangerth [Sun, 6 Feb 2011 17:20:58 +0000 (17:20 +0000)]

Make a number of things runtime parameters that we can read from an input file.

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Timo Heister [Sun, 6 Feb 2011 16:38:39 +0000 (16:38 +0000)]

implement mean_value() for PETScWrappers::MPI::Vector.

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Timo Heister [Sun, 6 Feb 2011 16:16:11 +0000 (16:16 +0000)]

step-32: smaller step size in 3d.

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Timo Heister [Sun, 6 Feb 2011 15:57:49 +0000 (15:57 +0000)]

Avoid deadlock in Utilities:MPI_InitFinalize when an exception is being thrown.

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Jean-Paul Pelteret [Sat, 5 Feb 2011 21:52:37 +0000 (21:52 +0000)]

Step-44: Removed static keyword from FEValues object in error_dil(). Added correct parameters file.

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Wolfgang Bangerth [Sat, 5 Feb 2011 18:02:56 +0000 (18:02 +0000)]

Set -rpath for Trilinos. This doesn't currently help since the Trilinos libs
aren't compiled with -rpath themselves (so their references to each other
fail) but it is still a step in the right direction.

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Wolfgang Bangerth [Sat, 5 Feb 2011 16:44:26 +0000 (16:44 +0000)]

Fix another place with the same problem.

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Wolfgang Bangerth [Sat, 5 Feb 2011 16:33:58 +0000 (16:33 +0000)]

The expander program can only handle block comments that start and end in a
single line, but this file had one that didn't. I wonder how that never was a
problem over the last couple of weeks...

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Wolfgang Bangerth [Sat, 5 Feb 2011 16:31:38 +0000 (16:31 +0000)]

Put NSF notice in a @note.

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Andrea Bonito [Sat, 5 Feb 2011 15:37:50 +0000 (15:37 +0000)]

Modified acknolwedgments

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Andrea Bonito [Sat, 5 Feb 2011 15:25:52 +0000 (15:25 +0000)]

added support

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Wolfgang Bangerth [Sat, 5 Feb 2011 06:35:30 +0000 (06:35 +0000)]

Update a comment.

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Wolfgang Bangerth [Sat, 5 Feb 2011 02:40:22 +0000 (02:40 +0000)]

Grammar fix.

git-svn-id: https://svn.dealii.org/trunk@23286 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 5 Feb 2011 00:25:42 +0000 (00:25 +0000)]

Document the extent of space savings when compressing data.

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Timo Heister [Fri, 4 Feb 2011 14:11:56 +0000 (14:11 +0000)]

step-32: credit myself.

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Wolfgang Bangerth [Mon, 31 Jan 2011 23:35:30 +0000 (23:35 +0000)]

Make compilation die if expand_instantiations fails.

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Wolfgang Bangerth [Mon, 31 Jan 2011 18:34:34 +0000 (18:34 +0000)]

Add one more.

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Wolfgang Bangerth [Mon, 31 Jan 2011 17:30:33 +0000 (17:30 +0000)]

Undo previous check-in for this file -- it resulted from a patch that was accidentally not committed yet.

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Wolfgang Bangerth [Mon, 31 Jan 2011 17:28:57 +0000 (17:28 +0000)]

Fix stupid mistake: one can't assume that blocks are less than 32k :-(

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Wolfgang Bangerth [Mon, 31 Jan 2011 15:41:05 +0000 (15:41 +0000)]

Use output from c0541.

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Toby D. Young [Mon, 31 Jan 2011 12:07:25 +0000 (12:07 +0000)]

Removed rogue 5D from slepc_solver

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Toby D. Young [Mon, 31 Jan 2011 11:21:36 +0000 (11:21 +0000)]

Fixed dangerous bug in index counter

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Wolfgang Bangerth [Mon, 31 Jan 2011 03:40:41 +0000 (03:40 +0000)]

Follow the usual naming convection: use "boundary" instead of "bdry".

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Markus Buerg [Sun, 30 Jan 2011 07:21:51 +0000 (07:21 +0000)]

Documentation changes.

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Wolfgang Bangerth [Sat, 29 Jan 2011 03:24:41 +0000 (03:24 +0000)]

Undo r23269 since one can't compile the library any more since that change.

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Wolfgang Bangerth [Fri, 28 Jan 2011 19:48:13 +0000 (19:48 +0000)]

Update.

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Wolfgang Bangerth [Fri, 28 Jan 2011 18:50:38 +0000 (18:50 +0000)]

Link the library first on the local file system, and then move the result into its final destination.

git-svn-id: https://svn.dealii.org/trunk@23271 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 28 Jan 2011 18:48:06 +0000 (18:48 +0000)]

Write data in VTU format compressed, if possible.

git-svn-id: https://svn.dealii.org/trunk@23270 0785d39b-7218-0410-832d-ea1e28bc413d

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Markus Buerg [Fri, 28 Jan 2011 16:30:59 +0000 (16:30 +0000)]

Fixed interface for MUMPS.

git-svn-id: https://svn.dealii.org/trunk@23269 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Thu, 27 Jan 2011 14:07:20 +0000 (14:07 +0000)]

Extrapolate Stokes solution since this reduces the number of iterations in the linear solver.

git-svn-id: https://svn.dealii.org/trunk@23268 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 27 Jan 2011 00:26:59 +0000 (00:26 +0000)]

Add another one.

git-svn-id: https://svn.dealii.org/trunk@23267 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 26 Jan 2011 14:38:34 +0000 (14:38 +0000)]

fix test and also check if all machines think the vector is ghosted.

git-svn-id: https://svn.dealii.org/trunk@23266 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 26 Jan 2011 14:25:45 +0000 (14:25 +0000)]

introduce has_ghost_elements() for Trilinos and PETSc vectors.

git-svn-id: https://svn.dealii.org/trunk@23265 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 26 Jan 2011 12:54:01 +0000 (12:54 +0000)]

step-31: simplify min/max calculation.

git-svn-id: https://svn.dealii.org/trunk@23264 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 26 Jan 2011 08:02:09 +0000 (08:02 +0000)]

step-32: correct comment and cleanup calculation of get_extrapolated_temperature_range().

git-svn-id: https://svn.dealii.org/trunk@23263 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 25 Jan 2011 14:38:23 +0000 (14:38 +0000)]

Restore original behavior.

git-svn-id: https://svn.dealii.org/trunk@23262 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Tue, 25 Jan 2011 13:55:45 +0000 (13:55 +0000)]

typo in publications.

git-svn-id: https://svn.dealii.org/trunk@23261 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 25 Jan 2011 04:46:39 +0000 (04:46 +0000)]

Arg. Fix conditionals.

git-svn-id: https://svn.dealii.org/trunk@23260 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 25 Jan 2011 04:37:54 +0000 (04:37 +0000)]

Check in a first draft of the ability to write compressed VTU files. This
isn't working right now, so it is disabled, but this way other people can
"throw an eye on it".

git-svn-id: https://svn.dealii.org/trunk@23259 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 25 Jan 2011 04:36:54 +0000 (04:36 +0000)]

Find out about endianness of the system we run on.

git-svn-id: https://svn.dealii.org/trunk@23258 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Steigemann [Mon, 24 Jan 2011 23:33:57 +0000 (23:33 +0000)]

add update_ghost_values to vector classes for compatibility with PETSc

git-svn-id: https://svn.dealii.org/trunk@23257 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 24 Jan 2011 05:05:11 +0000 (05:05 +0000)]

Leave a comment for when we document the program.

git-svn-id: https://svn.dealii.org/trunk@23256 0785d39b-7218-0410-832d-ea1e28bc413d

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