more on iterators

git-svn-id: https://svn.dealii.org/trunk@11150 0785d39b-7218-0410-832d-ea1e28bc413d

Add one more publication of Brian.

git-svn-id: https://svn.dealii.org/trunk@11149 0785d39b-7218-0410-832d-ea1e28bc413d

hyper_ball does work in 3d as well for quite some time now.

git-svn-id: https://svn.dealii.org/trunk@11148 0785d39b-7218-0410-832d-ea1e28bc413d

.

git-svn-id: https://svn.dealii.org/trunk@11147 0785d39b-7218-0410-832d-ea1e28bc413d

.

git-svn-id: https://svn.dealii.org/trunk@11146 0785d39b-7218-0410-832d-ea1e28bc413d

Remove write_multigrid flag from DXFLAGS.

git-svn-id: https://svn.dealii.org/trunk@11145 0785d39b-7218-0410-832d-ea1e28bc413d

Improve documentation.

git-svn-id: https://svn.dealii.org/trunk@11144 0785d39b-7218-0410-832d-ea1e28bc413d

FETools::compute_face_embedding_matrices

git-svn-id: https://svn.dealii.org/trunk@11143 0785d39b-7218-0410-832d-ea1e28bc413d

added disable_abort_on_exception() function to prevent the Assert() macro
from calling abort. This change is not yet used in the regression tests,
but this will soon happen...

git-svn-id: https://svn.dealii.org/trunk@11142 0785d39b-7218-0410-832d-ea1e28bc413d

same as before, but working this time...

git-svn-id: https://svn.dealii.org/trunk@11138 0785d39b-7218-0410-832d-ea1e28bc413d

changed cygwin linkage behaviour, if dynamic libraries are used (see change notes)

git-svn-id: https://svn.dealii.org/trunk@11137 0785d39b-7218-0410-832d-ea1e28bc413d

added <cmath> header in householder.h

git-svn-id: https://svn.dealii.org/trunk@11136 0785d39b-7218-0410-832d-ea1e28bc413d

new function FETools::compute_face_embedding_matrices

git-svn-id: https://svn.dealii.org/trunk@11135 0785d39b-7218-0410-832d-ea1e28bc413d

QProjector

git-svn-id: https://svn.dealii.org/trunk@11134 0785d39b-7218-0410-832d-ea1e28bc413d

add missing instantiations

git-svn-id: https://svn.dealii.org/trunk@11133 0785d39b-7218-0410-832d-ea1e28bc413d

add documentation

git-svn-id: https://svn.dealii.org/trunk@11132 0785d39b-7218-0410-832d-ea1e28bc413d

start moving documentation from the description of the pseudo class to its functions

git-svn-id: https://svn.dealii.org/trunk@11131 0785d39b-7218-0410-832d-ea1e28bc413d

reformat documentation for doxygen

git-svn-id: https://svn.dealii.org/trunk@11130 0785d39b-7218-0410-832d-ea1e28bc413d

add version projecting on one face, but returning a quadrature rule

git-svn-id: https://svn.dealii.org/trunk@11129 0785d39b-7218-0410-832d-ea1e28bc413d

fix doxygen problem

git-svn-id: https://svn.dealii.org/trunk@11128 0785d39b-7218-0410-832d-ea1e28bc413d

minor improvements on last changes

git-svn-id: https://svn.dealii.org/trunk@11127 0785d39b-7218-0410-832d-ea1e28bc413d

Essay on iterators

git-svn-id: https://svn.dealii.org/trunk@11126 0785d39b-7218-0410-832d-ea1e28bc413d

.

git-svn-id: https://svn.dealii.org/trunk@11125 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@11124 0785d39b-7218-0410-832d-ea1e28bc413d

new projection matrices for DGP

git-svn-id: https://svn.dealii.org/trunk@11123 0785d39b-7218-0410-832d-ea1e28bc413d

Remove stored projection matrices and computed them instead

git-svn-id: https://svn.dealii.org/trunk@11122 0785d39b-7218-0410-832d-ea1e28bc413d

Fix wrong html tags.

git-svn-id: https://svn.dealii.org/trunk@11121 0785d39b-7218-0410-832d-ea1e28bc413d

Build dependencies properly. Should also fix the build failure on the Mac.

git-svn-id: https://svn.dealii.org/trunk@11120 0785d39b-7218-0410-832d-ea1e28bc413d

Use $(EXEEXT) instead of .exe

git-svn-id: https://svn.dealii.org/trunk@11119 0785d39b-7218-0410-832d-ea1e28bc413d

Use $(OBJEXT) instead of .o.

git-svn-id: https://svn.dealii.org/trunk@11118 0785d39b-7218-0410-832d-ea1e28bc413d

delete object files in doxygen on cleanup

git-svn-id: https://svn.dealii.org/trunk@11114 0785d39b-7218-0410-832d-ea1e28bc413d

Mention the pathscale compiler.

git-svn-id: https://svn.dealii.org/trunk@11109 0785d39b-7218-0410-832d-ea1e28bc413d

Move an entry down that isn't really imminent any more.

git-svn-id: https://svn.dealii.org/trunk@11108 0785d39b-7218-0410-832d-ea1e28bc413d

Regenerate

git-svn-id: https://svn.dealii.org/trunk@11107 0785d39b-7218-0410-832d-ea1e28bc413d

Detect and support the pathscale compiler. Everything above -O3 seems
to hang the compiler somewhere.

git-svn-id: https://svn.dealii.org/trunk@11106 0785d39b-7218-0410-832d-ea1e28bc413d

Document input parameters.

git-svn-id: https://svn.dealii.org/trunk@11105 0785d39b-7218-0410-832d-ea1e28bc413d

Add a way to figure out whether a parameter is documented.

git-svn-id: https://svn.dealii.org/trunk@11104 0785d39b-7218-0410-832d-ea1e28bc413d

Minor changes.

git-svn-id: https://svn.dealii.org/trunk@11103 0785d39b-7218-0410-832d-ea1e28bc413d

This part
       Output is created via the new <code
       class="class">ExceptionBase::print_stack_trace</code> function.
isn't true anymore, but the rest is.

git-svn-id: https://svn.dealii.org/trunk@11102 0785d39b-7218-0410-832d-ea1e28bc413d

Regenerate.

git-svn-id: https://svn.dealii.org/trunk@11101 0785d39b-7218-0410-832d-ea1e28bc413d

Don't forget to include stdlib.h if we want to use free()

git-svn-id: https://svn.dealii.org/trunk@11100 0785d39b-7218-0410-832d-ea1e28bc413d

Check whether we can link with -rdynamic.

git-svn-id: https://svn.dealii.org/trunk@11099 0785d39b-7218-0410-832d-ea1e28bc413d

Let the compiler generate all the data for the 4d case itself recursively.

git-svn-id: https://svn.dealii.org/trunk@11098 0785d39b-7218-0410-832d-ea1e28bc413d

We can't reliably generate *and compare* stacktraces within the testsuite, so don't even attempt.

git-svn-id: https://svn.dealii.org/trunk@11097 0785d39b-7218-0410-832d-ea1e28bc413d

Include tests.h -- this makes sure we don't produce a stack backtrace that may
confuse the testers.

git-svn-id: https://svn.dealii.org/trunk@11096 0785d39b-7218-0410-832d-ea1e28bc413d

Re-write the initializers of a few data elements recursively, rather than
using ?: for a fixed number of dimensions.

git-svn-id: https://svn.dealii.org/trunk@11095 0785d39b-7218-0410-832d-ea1e28bc413d

.

git-svn-id: https://svn.dealii.org/trunk@11094 0785d39b-7218-0410-832d-ea1e28bc413d

New test.

git-svn-id: https://svn.dealii.org/trunk@11093 0785d39b-7218-0410-832d-ea1e28bc413d

Make icc happy by adding missing this->

git-svn-id: https://svn.dealii.org/trunk@11092 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@11091 0785d39b-7218-0410-832d-ea1e28bc413d

Additional negative grid.

git-svn-id: https://svn.dealii.org/trunk@11090 0785d39b-7218-0410-832d-ea1e28bc413d

Reinclude grid_in_3d_evil_* grids.

git-svn-id: https://svn.dealii.org/trunk@11089 0785d39b-7218-0410-832d-ea1e28bc413d

Reinclude grid_in_3d_evil_* meshes.

git-svn-id: https://svn.dealii.org/trunk@11088 0785d39b-7218-0410-832d-ea1e28bc413d

Additional grid grid_in_msh_01.3d_neg.msh for checking treatment of negative grids.

git-svn-id: https://svn.dealii.org/trunk@11087 0785d39b-7218-0410-832d-ea1e28bc413d

Grid (originally version 1.1 of grid_in_msh_01.3d.msh) consisting of one misoriented cube with negative volume.

git-svn-id: https://svn.dealii.org/trunk@11086 0785d39b-7218-0410-832d-ea1e28bc413d

Reinclude grid_in_3d_evil_*.in grids.

git-svn-id: https://svn.dealii.org/trunk@11085 0785d39b-7218-0410-832d-ea1e28bc413d

cell_measure, invert_all_cells_of_negative_grid and their use.

git-svn-id: https://svn.dealii.org/trunk@11084 0785d39b-7218-0410-832d-ea1e28bc413d

Missing std.

git-svn-id: https://svn.dealii.org/trunk@11083 0785d39b-7218-0410-832d-ea1e28bc413d

Check for positive volumes right at the beginning of the 3d create_triangulation

git-svn-id: https://svn.dealii.org/trunk@11082 0785d39b-7218-0410-832d-ea1e28bc413d

Use invert_all_cells_of_negative_grid function.

git-svn-id: https://svn.dealii.org/trunk@11081 0785d39b-7218-0410-832d-ea1e28bc413d

Remove specializations of the GridReordering template class. Implementation of new invert_all_cells_of_negative_grid function.

git-svn-id: https://svn.dealii.org/trunk@11080 0785d39b-7218-0410-832d-ea1e28bc413d

Move implementation of the 3d measure function to GridTools::cell_measure.

git-svn-id: https://svn.dealii.org/trunk@11079 0785d39b-7218-0410-832d-ea1e28bc413d

New GridTools::cell_measure function.

git-svn-id: https://svn.dealii.org/trunk@11078 0785d39b-7218-0410-832d-ea1e28bc413d

Reformatting.

git-svn-id: https://svn.dealii.org/trunk@11077 0785d39b-7218-0410-832d-ea1e28bc413d

Why copying all CellData? This is not needed! Is now removed, saves computing time and memory.

git-svn-id: https://svn.dealii.org/trunk@11076 0785d39b-7218-0410-832d-ea1e28bc413d

Allow to query the number of entries in a subsection and its children.
Use this to suppress output for completely empty subsections when printing.

git-svn-id: https://svn.dealii.org/trunk@11075 0785d39b-7218-0410-832d-ea1e28bc413d

Allow to query the number of entries in a subsection and its children.

git-svn-id: https://svn.dealii.org/trunk@11074 0785d39b-7218-0410-832d-ea1e28bc413d

Comment out grid_in_3d_evil_*.in grids which include negative cells. Reinclude them as soon as renumbering of negative grids is available.

git-svn-id: https://svn.dealii.org/trunk@11073 0785d39b-7218-0410-832d-ea1e28bc413d

Change this grid to represent a cube with positive volume. Reinclude previous version (as additional test grid) as soon as renumbering of negative grids is available.

git-svn-id: https://svn.dealii.org/trunk@11072 0785d39b-7218-0410-832d-ea1e28bc413d

Comment out grid_in_3d_evil_*.in grids which include negative cells. Reinclude them as soon as renumbering of negative grids is available.

git-svn-id: https://svn.dealii.org/trunk@11071 0785d39b-7218-0410-832d-ea1e28bc413d

Add comments. Safeguard against multiple inclusion.

git-svn-id: https://svn.dealii.org/trunk@11070 0785d39b-7218-0410-832d-ea1e28bc413d

Bring the dummy struct back that I had thought was unnecessary.

git-svn-id: https://svn.dealii.org/trunk@11069 0785d39b-7218-0410-832d-ea1e28bc413d

Document last change.

git-svn-id: https://svn.dealii.org/trunk@11068 0785d39b-7218-0410-832d-ea1e28bc413d

Fix previous checkin: only issue newlines if there was also text
before the sections.

git-svn-id: https://svn.dealii.org/trunk@11067 0785d39b-7218-0410-832d-ea1e28bc413d

Switch off stacktraces in the testsuite.

git-svn-id: https://svn.dealii.org/trunk@11066 0785d39b-7218-0410-832d-ea1e28bc413d

Provide a way to switch off stacktraces.

git-svn-id: https://svn.dealii.org/trunk@11065 0785d39b-7218-0410-832d-ea1e28bc413d

One paper that has been accepted.

git-svn-id: https://svn.dealii.org/trunk@11064 0785d39b-7218-0410-832d-ea1e28bc413d

Make it compile.

git-svn-id: https://svn.dealii.org/trunk@11063 0785d39b-7218-0410-832d-ea1e28bc413d

Fix.

git-svn-id: https://svn.dealii.org/trunk@11062 0785d39b-7218-0410-832d-ea1e28bc413d

Check in create_triangulation that all cells have positive volume.

git-svn-id: https://svn.dealii.org/trunk@11061 0785d39b-7218-0410-832d-ea1e28bc413d

New ExcCellHasNegativeMeasure.

git-svn-id: https://svn.dealii.org/trunk@11060 0785d39b-7218-0410-832d-ea1e28bc413d

Remove NegativeMeasure assertions from measure function. Rather check for positive volumes in the Triangulation::create_triangulation function.

git-svn-id: https://svn.dealii.org/trunk@11059 0785d39b-7218-0410-832d-ea1e28bc413d

Move NegativeMeasure exception to Triangulation class.

git-svn-id: https://svn.dealii.org/trunk@11058 0785d39b-7218-0410-832d-ea1e28bc413d

New ExcNegativeMeasure

git-svn-id: https://svn.dealii.org/trunk@11057 0785d39b-7218-0410-832d-ea1e28bc413d

Now the measure value can be positive or negative. Add an assertion which checks that the computed measure is in fact positive.

git-svn-id: https://svn.dealii.org/trunk@11056 0785d39b-7218-0410-832d-ea1e28bc413d

Short term bug fix: re-import all OutputFormats.

git-svn-id: https://svn.dealii.org/trunk@11055 0785d39b-7218-0410-832d-ea1e28bc413d

Make step-13 and step-14 compile again.

git-svn-id: https://svn.dealii.org/trunk@11054 0785d39b-7218-0410-832d-ea1e28bc413d

changed makefiles to enable compiling with lapack and umfpack on cygwin systems.

git-svn-id: https://svn.dealii.org/trunk@11053 0785d39b-7218-0410-832d-ea1e28bc413d

More changes.

git-svn-id: https://svn.dealii.org/trunk@11052 0785d39b-7218-0410-832d-ea1e28bc413d

Put some empty lines between entries and subsections in print_parameters()

git-svn-id: https://svn.dealii.org/trunk@11051 0785d39b-7218-0410-832d-ea1e28bc413d

A number of changes into the right direction.

git-svn-id: https://svn.dealii.org/trunk@11050 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete lines.

git-svn-id: https://svn.dealii.org/trunk@11049 0785d39b-7218-0410-832d-ea1e28bc413d

Update.

git-svn-id: https://svn.dealii.org/trunk@11048 0785d39b-7218-0410-832d-ea1e28bc413d

Reimport a few symbols through using-declarations.

git-svn-id: https://svn.dealii.org/trunk@11047 0785d39b-7218-0410-832d-ea1e28bc413d

Fix.

git-svn-id: https://svn.dealii.org/trunk@11046 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a few problems with DataOutBase vs DataOutInterface.

git-svn-id: https://svn.dealii.org/trunk@11045 0785d39b-7218-0410-832d-ea1e28bc413d

Move a few functions to the DataOutBase class.

git-svn-id: https://svn.dealii.org/trunk@11044 0785d39b-7218-0410-832d-ea1e28bc413d

Move a few of the dimension-independent functions into the base class.

git-svn-id: https://svn.dealii.org/trunk@11043 0785d39b-7218-0410-832d-ea1e28bc413d

Update docs.

git-svn-id: https://svn.dealii.org/trunk@11042 0785d39b-7218-0410-832d-ea1e28bc413d

Move some of the dimension-independent functions into the DataOutBase base class.

git-svn-id: https://svn.dealii.org/trunk@11041 0785d39b-7218-0410-832d-ea1e28bc413d