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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Sun, 28 Feb 2021 11:39:40 +0000 (12:39 +0100)]
Remove a commented-out part of code.
Martin Kronbichler [Sat, 27 Feb 2021 14:20:51 +0000 (15:20 +0100)]
Merge pull request #11814 from peterrum/DataAccessOnFaces_values_simplex
Fix DataAccessOnFaces::values for meshes containing non-hypercube cells
Martin Kronbichler [Fri, 26 Feb 2021 20:14:49 +0000 (21:14 +0100)]
Merge pull request #11802 from peterrum/ComputeDiagonalHelper
Modularized MatrixFreeTools::compute_diagonal()
Martin Kronbichler [Fri, 26 Feb 2021 19:28:03 +0000 (20:28 +0100)]
Merge pull request #11805 from peterrum/create_geometric_coarsening_sequence_single_level
Simplify code of create_geometric_coarsening_sequence()
David Wells [Fri, 26 Feb 2021 14:51:10 +0000 (09:51 -0500)]
Merge pull request #11813 from peterrum/simplex_renaming_2
Rename further simplex-related files
Peter Munch [Fri, 26 Feb 2021 12:35:22 +0000 (13:35 +0100)]
Fix DataAccessOnFaces::values for meshes containing non-hypercube cells
Peter Munch [Fri, 26 Feb 2021 06:51:55 +0000 (07:51 +0100)]
Rename further simplex-related files
Peter Munch [Wed, 24 Feb 2021 20:54:28 +0000 (21:54 +0100)]
Modularized MatrixFreeTools::compute_diagonal()
Bruno Turcksin [Fri, 26 Feb 2021 03:28:05 +0000 (22:28 -0500)]
Merge pull request #11775 from bangerth/particles
Rename the write/update particle functions.
Wolfgang Bangerth [Thu, 25 Feb 2021 17:11:08 +0000 (10:11 -0700)]
Merge pull request #11741 from marcfehling/shared-toggle
New class TemporarilyRestoreSubdomainIds.
David Wells [Thu, 25 Feb 2021 14:25:13 +0000 (09:25 -0500)]
Merge pull request #11809 from peterrum/remove_simplex_namespace
Remove Simplex namespace
David Wells [Thu, 25 Feb 2021 14:08:03 +0000 (09:08 -0500)]
Merge pull request #11808 from bangerth/ref-cell-32
Mark GeometryInfo as deprecated in favor of ReferenceCell.
Peter Munch [Thu, 25 Feb 2021 11:12:08 +0000 (12:12 +0100)]
Merge pull request #11803 from peterrum/fe_eval_functions
Introduce three new FEEvaluation functions
Peter Munch [Wed, 24 Feb 2021 20:56:20 +0000 (21:56 +0100)]
Introduce three new FEEvaluation functions
Peter Munch [Wed, 24 Feb 2021 23:49:12 +0000 (00:49 +0100)]
Simplify code of create_geometric_coarsening_sequence()
Peter Munch [Thu, 25 Feb 2021 08:40:25 +0000 (09:40 +0100)]
Remove Simplex namespace
Martin Kronbichler [Thu, 25 Feb 2021 06:16:09 +0000 (07:16 +0100)]
Merge pull request #11806 from tamiko/step-69-fix
examples/step-69: Fix mesh generation
Peter Munch [Thu, 25 Feb 2021 05:46:40 +0000 (06:46 +0100)]
Merge pull request #11807 from bangerth/ref-cell-31
Rename variables to make their names more standard.
Wolfgang Bangerth [Thu, 25 Feb 2021 03:59:41 +0000 (20:59 -0700)]
Mark GeometryInfo as deprecated in favor of ReferenceCell.
Wolfgang Bangerth [Thu, 25 Feb 2021 03:25:03 +0000 (20:25 -0700)]
Merge pull request #11801 from marcfehling/dh-clear-fails
Attach DoFHandler::clear() to Triangulation::Signals::clear.
Wolfgang Bangerth [Thu, 25 Feb 2021 03:23:53 +0000 (20:23 -0700)]
Rename variables to make their names more standard.
Matthias Maier [Thu, 25 Feb 2021 02:15:29 +0000 (20:15 -0600)]
examples/step-69: Fix mesh generation
It turns out that this piece of code only ever worked for a precise
ratio of height and disk ratio of 4. If this ratio was violated the
merge_triangulations() call would fail to properly glue the mesh
together due to unmatched vertices.
Marc Fehling [Fri, 12 Feb 2021 21:58:58 +0000 (14:58 -0700)]
New class TemporarilyRestoreSubdomainIds.
Temporarily changes subdomain IDs of cells on p:s:T to their true owner.
Marc Fehling [Wed, 24 Feb 2021 18:17:34 +0000 (11:17 -0700)]
Attach DoFHandler::clear() to Triangulation::Signals::clear.
Martin Kronbichler [Wed, 24 Feb 2021 20:37:08 +0000 (21:37 +0100)]
Merge pull request #11744 from peterrum/simplex_move
Remove simplex folders
Wolfgang Bangerth [Wed, 24 Feb 2021 17:44:07 +0000 (10:44 -0700)]
Merge pull request #11793 from marcfehling/hierarchy-sequence
Added hp::FECollection::get_hierarchy_sequence().
David Wells [Wed, 24 Feb 2021 13:50:59 +0000 (08:50 -0500)]
Merge pull request #11797 from bangerth/hdf5
Provide compile-time error messages if we don't handle a type.
Peter Munch [Wed, 24 Feb 2021 11:05:03 +0000 (12:05 +0100)]
Merge pull request #11800 from marcfehling/double-negation
Remove double negation from exception message.
Peter Munch [Sat, 13 Feb 2021 20:50:35 +0000 (21:50 +0100)]
Remove simplex folders
Marc Fehling [Mon, 22 Feb 2021 19:54:21 +0000 (12:54 -0700)]
Added hp::FECollection::get_hierarchy_sequence().
Marc Fehling [Tue, 23 Feb 2021 22:21:58 +0000 (15:21 -0700)]
Remove double negation from exception message.
Daniel Arndt [Tue, 23 Feb 2021 23:00:00 +0000 (18:00 -0500)]
Merge pull request #11796 from QiaoLei-88/fixIndentCommon
make remove_trailing_whitespace() works in both MAC OS and Linux system
Daniel Arndt [Tue, 23 Feb 2021 22:59:54 +0000 (17:59 -0500)]
Merge pull request #11799 from bangerth/7
Minor updates to the documentation of step-7.
Daniel Arndt [Tue, 23 Feb 2021 21:56:16 +0000 (16:56 -0500)]
Merge pull request #11788 from bangerth/ndarray
Use the new ndarray class instead of nested std::array.
Wolfgang Bangerth [Tue, 23 Feb 2021 21:14:59 +0000 (14:14 -0700)]
Minor updates to the documentation of step-7.
Wolfgang Bangerth [Tue, 23 Feb 2021 17:39:35 +0000 (10:39 -0700)]
Provide compile-time error messages if we don't handle a type.
Lei Qiao [Tue, 23 Feb 2021 03:34:07 +0000 (11:34 +0800)]
make remove_trailing_whitespace() works in both MAC OS and Linux system
Wolfgang Bangerth [Tue, 23 Feb 2021 02:32:19 +0000 (19:32 -0700)]
Use the new ndarray class instead of nested std::array.
Wolfgang Bangerth [Mon, 22 Feb 2021 20:40:51 +0000 (13:40 -0700)]
Merge pull request #11785 from drwells/fix-fortran-mangling
Fix fortran mangling
Luca Heltai [Mon, 22 Feb 2021 18:11:45 +0000 (19:11 +0100)]
Merge pull request #11714 from masterleinad/replace_const_std_unique_ptr_ref
Replace passing by const std::unique_ptr<T>& by const T&
Daniel Arndt [Mon, 22 Feb 2021 16:14:50 +0000 (11:14 -0500)]
Add changelog entry
David Wells [Mon, 22 Feb 2021 14:26:16 +0000 (09:26 -0500)]
Merge pull request #11787 from peterrum/non_conti_tag
Fix tags of NoncontiguousPartitioner
David Wells [Sat, 20 Feb 2021 21:46:53 +0000 (16:46 -0500)]
Minor CMake fixes
David Wells [Sat, 20 Feb 2021 21:46:28 +0000 (16:46 -0500)]
Use CMake's facility for determining correct Fortran mangling.
Peter Munch [Mon, 22 Feb 2021 05:54:31 +0000 (06:54 +0100)]
Merge pull request #11783 from bangerth/ref-cell-staging
Remove the internal::ReferenceCell::Base class and derived classes.
Wolfgang Bangerth [Mon, 22 Feb 2021 01:44:20 +0000 (18:44 -0700)]
Adjust tests.
Wolfgang Bangerth [Sun, 21 Feb 2021 17:23:00 +0000 (10:23 -0700)]
Merge pull request #11743 from tamiko/ndarray
add ndarray typedef
Peter Munch [Sun, 21 Feb 2021 15:14:45 +0000 (16:14 +0100)]
Fix tags of NoncontiguousPartitioner
Wolfgang Bangerth [Sat, 20 Feb 2021 17:48:34 +0000 (10:48 -0700)]
Merge pull request #11782 from drwells/remove-deprecated-doxygen-feature
Remove a deprecated doxygen feature option.
Wolfgang Bangerth [Thu, 18 Feb 2021 21:07:00 +0000 (14:07 -0700)]
Remove the internal::ReferenceCell::Base class and derived classes.
Daniel Arndt [Sat, 20 Feb 2021 16:30:22 +0000 (11:30 -0500)]
Merge pull request #11780 from Rombur/cuda_cell_filter
Add a version of CUDAWrappers::MatrixFree::reinit() that takes a predicate for cell_loop
David Wells [Sat, 20 Feb 2021 15:45:24 +0000 (10:45 -0500)]
Remove a deprecated doxygen feature option.
The layout generated at
https://www.dealii.org/current/doxygen/deal.II/classes.html
will always now have a single column (with or without the now-deprecated
option), which is much more legible anyway.
Martin Kronbichler [Sat, 20 Feb 2021 07:12:52 +0000 (08:12 +0100)]
Merge pull request #11781 from tamiko/fix_compilation_2
Sundials: Mark function as inline
Matthias Maier [Sat, 20 Feb 2021 05:10:08 +0000 (23:10 -0600)]
Merge pull request #11778 from bangerth/ref-cell-30
Rename variables.
Matthias Maier [Sat, 20 Feb 2021 01:13:44 +0000 (19:13 -0600)]
add a test
Matthias Maier [Sat, 20 Feb 2021 00:46:55 +0000 (18:46 -0600)]
add a changelog entry
Matthias Maier [Sat, 13 Feb 2021 19:35:04 +0000 (13:35 -0600)]
Introduce an ndarray type alias
The ndarray type alias models an multidimensional array. It has a
variable number of template arguments denoting the size of each index
that get internally converted to stacked std::arrays. For example:
dealii::ndarray<double, 1, 2, 3, 4> my_array
is an alias for the following construct:
std::array<std::array<std::array<std::array<double, 4>, 3>, 2>, 1>
Matthias Maier [Sat, 20 Feb 2021 00:19:15 +0000 (18:19 -0600)]
Sundials: Mark function as inline
These two functions have a complete definition in a header file that
gets including in multiple compilation units. In this case we have to
mark these functions as "inline" so that the compiler emits a so-called
"weak symbol". Otherwise linkage will fail due to multiply defined
symbols.
Daniel Arndt [Fri, 19 Feb 2021 21:50:02 +0000 (16:50 -0500)]
Merge pull request #11776 from bangerth/ref-cell-28
Also move combine_face_and_line_orientation() into ReferenceCell.
Bruno Turcksin [Fri, 19 Feb 2021 20:57:55 +0000 (20:57 +0000)]
Add a version of CUDAWrappers::MatrixFree::reinit() that takes a predicate for cell_loop
David Wells [Fri, 19 Feb 2021 20:44:33 +0000 (15:44 -0500)]
Merge pull request #11777 from bangerth/ref-cell-29
Better name for a variables.
Wolfgang Bangerth [Fri, 19 Feb 2021 18:17:39 +0000 (11:17 -0700)]
Rename the write/update particle functions.
Give these functions a more systematic name. While also adjust to a more widely
used idiom: A function that takes a pointer doesn't return the updated pointer
location via that argument, but instead as an explicit return value. This idiom
is in fact used just a couple of lines below the places where these functions
are currently used in particle_handler.cc.
Wolfgang Bangerth [Fri, 19 Feb 2021 19:09:59 +0000 (12:09 -0700)]
Rename variables.
Wolfgang Bangerth [Thu, 18 Feb 2021 19:36:36 +0000 (12:36 -0700)]
Better name variables.
Wolfgang Bangerth [Thu, 18 Feb 2021 19:54:49 +0000 (12:54 -0700)]
Also move combine_face_and_line_orientation() into ReferenceCell.
David Wells [Fri, 19 Feb 2021 18:18:49 +0000 (13:18 -0500)]
Merge pull request #11770 from bangerth/ref-cell-27
Move the exodus conversion functions to RefereneCell.
Daniel Arndt [Fri, 19 Feb 2021 05:17:35 +0000 (00:17 -0500)]
Merge pull request #11772 from gassmoeller/move_particle_id
Move particle ids into PropertyPool
Wolfgang Bangerth [Fri, 19 Feb 2021 04:22:00 +0000 (21:22 -0700)]
Merge pull request #11736 from sebproell/nvector-fix-comm-serial
N_Vector: get_communicator return nullptr in serial
Rene Gassmoeller [Thu, 18 Feb 2021 21:15:26 +0000 (16:15 -0500)]
Move particle ids into PropertyPool
Wolfgang Bangerth [Thu, 18 Feb 2021 19:05:05 +0000 (12:05 -0700)]
Move the exodus conversion functions to RefereneCell.
Wolfgang Bangerth [Thu, 18 Feb 2021 17:58:21 +0000 (10:58 -0700)]
Merge pull request #11767 from drwells/update-changelogs
Update changelogs
David Wells [Wed, 17 Feb 2021 16:33:27 +0000 (11:33 -0500)]
Add some missing changelog entries.
David Wells [Wed, 17 Feb 2021 16:30:17 +0000 (11:30 -0500)]
Fix a year in a changelog.
Peter Munch [Wed, 17 Feb 2021 12:12:50 +0000 (13:12 +0100)]
Merge pull request #11733 from marcfehling/soltrans-shared
::SolutionTransfer with p::s::Triangulation and artificial cells.
Martin Kronbichler [Wed, 17 Feb 2021 11:44:45 +0000 (12:44 +0100)]
Merge pull request #11760 from peterrum/indent_all_sigle_newline
indent-all: ensure only a single newline at end of files
David Wells [Wed, 17 Feb 2021 02:11:23 +0000 (21:11 -0500)]
Merge pull request #11763 from drwells/noncontiguous-assertions
Add some assertions to the noncontiguous partitioner.
David Wells [Wed, 17 Feb 2021 02:11:06 +0000 (21:11 -0500)]
Merge pull request #11765 from peterrum/temporary_storage_size
Add NoncontiguousPartitioner::temporary_storage_size()
Peter Munch [Tue, 16 Feb 2021 09:42:08 +0000 (10:42 +0100)]
indent-all: ensure only a single newline at end of files
Peter Munch [Tue, 16 Feb 2021 19:53:45 +0000 (20:53 +0100)]
Add NoncontiguousPartitioner::temporary_storage_size
David Wells [Tue, 16 Feb 2021 20:45:41 +0000 (15:45 -0500)]
Add index checks to the noncontiguous partitioner.
Martin Kronbichler [Tue, 16 Feb 2021 20:45:44 +0000 (21:45 +0100)]
Merge pull request #11751 from drwells/move-comm-pattern-base
Move LinearAlgebra::CommunicationBase -> Utilities::MPI::CommunicationBase.
David Wells [Sun, 14 Feb 2021 23:32:11 +0000 (18:32 -0500)]
Move LA::CommunicationBase -> U::M::CommunicationBase.
Things use this outside of linear algebra classes now so we should move it out
of LinearAlgebra.
While here I changed some default arguments that had gotten rather long.
Peter Munch [Tue, 16 Feb 2021 16:07:45 +0000 (17:07 +0100)]
Merge pull request #11762 from masterleinad/fix_face_setup_01
Fix matrix_free/face_setup_01
Daniel Arndt [Tue, 16 Feb 2021 14:16:48 +0000 (09:16 -0500)]
Fix matrix_free/face_setup_01
Martin Kronbichler [Tue, 16 Feb 2021 13:56:44 +0000 (14:56 +0100)]
Merge pull request #11761 from peterrum/PreconditionBlockJacobi_AdditionalData
Remove copy-and-past error in comment
Bruno Turcksin [Tue, 16 Feb 2021 13:34:50 +0000 (08:34 -0500)]
Merge pull request #11758 from kronbichler/adjust_dictionary_grain_size
Adjust minimum grain size of dictionary for consensus algorithm
Bruno Turcksin [Tue, 16 Feb 2021 13:33:18 +0000 (08:33 -0500)]
Merge pull request #11745 from peterrum/simplex_pmg_local
Test p global coarsening for locally refined meshes
Peter Munch [Tue, 16 Feb 2021 10:13:06 +0000 (11:13 +0100)]
Remove copy-and-past error in comment
Peter Munch [Sun, 14 Feb 2021 11:35:29 +0000 (12:35 +0100)]
Test p global coarsening for locally refined meshes
Martin Kronbichler [Mon, 15 Feb 2021 17:11:04 +0000 (18:11 +0100)]
Adjust minimum grain size of dictionary for consensus algorithm
Daniel Arndt [Tue, 16 Feb 2021 02:29:45 +0000 (21:29 -0500)]
Merge pull request #11487 from masterleinad/implement-local_size_2
David Wells [Mon, 15 Feb 2021 18:34:46 +0000 (13:34 -0500)]
Use ArrayViews directly instead of pointers.
David Wells [Mon, 15 Feb 2021 16:46:45 +0000 (11:46 -0500)]
Merge pull request #11753 from drwells/more-mpi-data-types
Add some more MPI datatypes.
Martin Kronbichler [Mon, 15 Feb 2021 14:59:10 +0000 (15:59 +0100)]
Merge pull request #11756 from peterrum/reset_global_cell_indices_is
TriangulationBase::reset_global_cell_indices(): collect indices manually
Wolfgang Bangerth [Mon, 15 Feb 2021 14:08:15 +0000 (07:08 -0700)]
Merge pull request #11755 from peterrum/compute_set_union_complexity
Improve complexity of compute_set_union
Wolfgang Bangerth [Mon, 15 Feb 2021 14:01:14 +0000 (07:01 -0700)]
Merge pull request #11750 from drwells/document-early-deprecation
Better document early deprecation.
Peter Munch [Mon, 15 Feb 2021 11:45:21 +0000 (12:45 +0100)]
TriangulationBase::reset_global_cell_indices(): collect indices manually
Peter Munch [Mon, 15 Feb 2021 11:19:32 +0000 (12:19 +0100)]
Improve complexity of compute_set_union
Martin Kronbichler [Mon, 15 Feb 2021 10:59:20 +0000 (11:59 +0100)]
Merge pull request #11754 from peterrum/fix_read_exodusii_sidesets
Fix ReferenceCell usage in read_exodusii_sidesets()
Peter Munch [Mon, 15 Feb 2021 07:22:25 +0000 (08:22 +0100)]
Fix ReferenceCell usage in read_exodusii_sidesets()
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