https://gitweb.dealii.org/

Timo Heister [Tue, 19 Nov 2013 15:06:06 +0000 (15:06 +0000)]

update documentation

git-svn-id: https://svn.dealii.org/trunk@31708 0785d39b-7218-0410-832d-ea1e28bc413d

Matthias Maier [Tue, 19 Nov 2013 14:52:55 +0000 (14:52 +0000)]

Testsuite: Bugfix: Allow to run the testsuite script from within an insource build

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Toby D. Young [Tue, 19 Nov 2013 13:57:06 +0000 (13:57 +0000)]

Bug fix.

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Wolfgang Bangerth [Tue, 19 Nov 2013 13:54:40 +0000 (13:54 +0000)]

Provide more context in the documentation and link to a paper in preparation.

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Timo Heister [Tue, 19 Nov 2013 00:56:36 +0000 (00:56 +0000)]

do not use typeid internally because this is broken on intel 13+. Instead: emulate this in the DoFHandlerPolicy classes. Also update test output

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Timo Heister [Mon, 18 Nov 2013 16:07:44 +0000 (16:07 +0000)]

add missing instantiations (for intel)

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Timo Heister [Mon, 18 Nov 2013 13:52:31 +0000 (13:52 +0000)]

test: add whitespace to output so that numdiff can work, output more digits

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Timo Heister [Mon, 18 Nov 2013 13:50:11 +0000 (13:50 +0000)]

loosen tolerance in test to make it pass

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Timo Heister [Mon, 18 Nov 2013 12:17:34 +0000 (12:17 +0000)]

output more digits in test

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Timo Heister [Mon, 18 Nov 2013 03:33:02 +0000 (03:33 +0000)]

output more digits in test

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Timo Heister [Mon, 18 Nov 2013 01:52:08 +0000 (01:52 +0000)]

mention changes

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Timo Heister [Mon, 18 Nov 2013 01:43:40 +0000 (01:43 +0000)]

fix template instantiations for GridGenerator::parallelogram, do not pass array as a reference

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Wolfgang Bangerth [Mon, 18 Nov 2013 01:32:14 +0000 (01:32 +0000)]

Augment documentation.

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Wolfgang Bangerth [Mon, 18 Nov 2013 01:31:26 +0000 (01:31 +0000)]

Fix the failure of find_cell_10a by implementing a better stopping criterion for the Newton iteration, using a variable metric Newton method.

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Timo Heister [Mon, 18 Nov 2013 00:04:49 +0000 (00:04 +0000)]

fix typo

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Wolfgang Bangerth [Sun, 17 Nov 2013 19:36:35 +0000 (19:36 +0000)]

Also run test in optimized mode.

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Wolfgang Bangerth [Sun, 17 Nov 2013 19:35:59 +0000 (19:35 +0000)]

Fix one testcase, see https://code.google.com/p/dealii/issues/detail?id=134 . Since we are having so much trouble with this function, I also left my debug code in there, guarded with \#ifdef DEBUG_NO_NORMAL_FLUX. Adjust testcase.

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Wolfgang Bangerth [Sun, 17 Nov 2013 19:35:33 +0000 (19:35 +0000)]

Fix one testcase, see https://code.google.com/p/dealii/issues/detail?id=134 . Since we are having so much trouble with this function, I also left my debug code in there, guarded with \#ifdef DEBUG_NO_NORMAL_FLUX.

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Martin Kronbichler [Sun, 17 Nov 2013 15:45:16 +0000 (15:45 +0000)]

Fix non-MPI case

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Martin Kronbichler [Sun, 17 Nov 2013 15:44:08 +0000 (15:44 +0000)]

Fix description

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Martin Steigemann [Sun, 17 Nov 2013 14:49:49 +0000 (14:49 +0000)]

Fixed: FETools::inteprolation_difference was not working with TrilinosWrappers::MPI::Vectors with ghost entries, also, TrilinosWrappers::VectorBase has a get_mpi_communicator method now.

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Wolfgang Bangerth [Sat, 16 Nov 2013 12:46:15 +0000 (12:46 +0000)]

Fix a note in a comment.

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Matthias Maier [Sat, 16 Nov 2013 09:39:22 +0000 (09:39 +0000)]

Testsuite: Fix data_out_stack_0?

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Matthias Maier [Sat, 16 Nov 2013 08:31:05 +0000 (08:31 +0000)]

Bugfix: Define FP_USE_THREAD_SAFE_EVAL in case of enabled multithreading support.

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Matthias Maier [Sat, 16 Nov 2013 08:04:28 +0000 (08:04 +0000)]

Set missing svn:keywords property on a bunch of files

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Matthias Maier [Sat, 16 Nov 2013 07:51:41 +0000 (07:51 +0000)]

Fix a lot of stray $Id$s

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Wolfgang Bangerth [Fri, 15 Nov 2013 23:12:48 +0000 (23:12 +0000)]

Fix error message.

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Wolfgang Bangerth [Fri, 15 Nov 2013 21:28:50 +0000 (21:28 +0000)]

Minor language fix.

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Timo Heister [Fri, 15 Nov 2013 21:11:09 +0000 (21:11 +0000)]

update comment

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Timo Heister [Fri, 15 Nov 2013 21:10:16 +0000 (21:10 +0000)]

fix test output

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Timo Heister [Fri, 15 Nov 2013 21:10:02 +0000 (21:10 +0000)]

assert that we have a enough fe components in compute_no_normal_flux_constraints

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Timo Heister [Fri, 15 Nov 2013 18:52:33 +0000 (18:52 +0000)]

add failing test for no_flux

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Matthias Maier [Fri, 15 Nov 2013 15:35:45 +0000 (15:35 +0000)]

Add PETSC_WITH_COMPLEX to Config.sample

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Matthias Maier [Fri, 15 Nov 2013 15:31:05 +0000 (15:31 +0000)]

Testsuite: Fix the issue with binary outputs and data_out_base_dx

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Wolfgang Bangerth [Fri, 15 Nov 2013 15:23:01 +0000 (15:23 +0000)]

Split a function in hopes to alleviate linker errors with ICC.

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Matthias Maier [Fri, 15 Nov 2013 14:30:09 +0000 (14:30 +0000)]

Testsuite: Also accept numerical values that have a relative error of less than 1.e-8 (but an absolute error of more than 1.e-6)

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Matthias Maier [Thu, 14 Nov 2013 23:29:32 +0000 (23:29 +0000)]

CMake: Bugfix: Do not use >/dev/null on native Windows targets

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Matthias Maier [Thu, 14 Nov 2013 23:29:29 +0000 (23:29 +0000)]

CMake: Remove debug output

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Wolfgang Bangerth [Thu, 14 Nov 2013 23:17:10 +0000 (23:17 +0000)]

Replace the expensive computation of a set intersection with the cheap computation whether two sets have a nonempty intersection at all. We don't need the intersection anyway.

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Matthias Maier [Thu, 14 Nov 2013 22:20:28 +0000 (22:20 +0000)]

CMake: Print TEST_DIR during configuration so that one actually has a clue which TEST_DIR was processed

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Guido Kanschat [Thu, 14 Nov 2013 22:19:53 +0000 (22:19 +0000)]

fixed output

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Guido Kanschat [Thu, 14 Nov 2013 22:10:37 +0000 (22:10 +0000)]

add missing initialization

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Wolfgang Bangerth [Thu, 14 Nov 2013 21:40:04 +0000 (21:40 +0000)]

Adjust the output of some tests so that we get below the threshold of numdiff.

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Wolfgang Bangerth [Thu, 14 Nov 2013 21:38:59 +0000 (21:38 +0000)]

Initialize a variable to avoid a testsuite failure with ICC 14.

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:38:31 +0000 (20:38 +0000)]

Avoid instantiating FE_FaceQ and FE_FaceP in 1d.

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:29:27 +0000 (20:29 +0000)]

Match function instantiation to the original declaration in hopes to
make ICC 14 happy. Unfortunately, this is not the case.

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:23:07 +0000 (20:23 +0000)]

Provide a missing template instantiation.

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:06:27 +0000 (20:06 +0000)]

Augment an exception message. This doesn't solve the problem, but it
gets us closer to it...

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Toby D. Young [Thu, 14 Nov 2013 14:16:32 +0000 (14:16 +0000)]

Add a harmless macro PETSC_WITH_COMPLEX.

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Toby D. Young [Thu, 14 Nov 2013 14:15:16 +0000 (14:15 +0000)]

Put in a missing word that was bugging me...

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Toby D. Young [Thu, 14 Nov 2013 13:38:11 +0000 (13:38 +0000)]

Add a reasonable (unfinished) petsc test.

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Toby D. Young [Thu, 14 Nov 2013 13:37:28 +0000 (13:37 +0000)]

Add requested output to slepc quicktest.

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Wolfgang Bangerth [Thu, 14 Nov 2013 13:02:26 +0000 (13:02 +0000)]

No need to say
class.template function ()
when no explicit template arguments are provided.

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Matthias Maier [Thu, 14 Nov 2013 10:21:34 +0000 (10:21 +0000)]

Provide some more information about auxiliary compiler in detailed.log

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Wolfgang Bangerth [Thu, 14 Nov 2013 02:07:50 +0000 (02:07 +0000)]

Fix compile error with new default constructor of CellData.

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Matthias Maier [Thu, 14 Nov 2013 01:58:07 +0000 (01:58 +0000)]

CMake: Bugfix, do not use removed macro

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Matthias Maier [Wed, 13 Nov 2013 23:54:04 +0000 (23:54 +0000)]

CMake: Unify naming in detailed.log

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Matthias Maier [Wed, 13 Nov 2013 23:48:05 +0000 (23:48 +0000)]

CMake: Unify registration of feature configurations and provide a central
possibility to filter configuration options in macro_register_feature.cmake

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Matthias Maier [Wed, 13 Nov 2013 22:53:32 +0000 (22:53 +0000)]

Bugfix: Filter out spurious "FALSE" in (BLAS|LAPACK)_LIBRARIES

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Matthias Maier [Wed, 13 Nov 2013 17:27:33 +0000 (17:27 +0000)]

Add a configure check for a regression with icc-14.0.0 and libstdc++-4.7 in C++11 mode

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Wolfgang Bangerth [Wed, 13 Nov 2013 16:40:04 +0000 (16:40 +0000)]

Provide default constructor for CellData to fix testsuite failures with Intel ICC 14.

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Timo Heister [Wed, 13 Nov 2013 14:12:24 +0000 (14:12 +0000)]

try again to fix test

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Timo Heister [Wed, 13 Nov 2013 13:03:31 +0000 (13:03 +0000)]

fix test

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Wolfgang Bangerth [Wed, 13 Nov 2013 12:31:26 +0000 (12:31 +0000)]

Add a note.

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Timo Heister [Tue, 12 Nov 2013 16:06:11 +0000 (16:06 +0000)]

simplify test find_cell_10

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Bruno Turcksin [Tue, 12 Nov 2013 15:16:02 +0000 (15:16 +0000)]

Fix a bug in WorkStream when using graph coloring.

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Timo Heister [Tue, 12 Nov 2013 14:59:57 +0000 (14:59 +0000)]

simplify test

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Toby D. Young [Tue, 12 Nov 2013 14:26:18 +0000 (14:26 +0000)]

Wolfgang's patch for thread management (use pointer to).

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Guido Kanschat [Tue, 12 Nov 2013 12:56:29 +0000 (12:56 +0000)]

try to keep SparseMatrix in module

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Timo Heister [Mon, 11 Nov 2013 23:27:32 +0000 (23:27 +0000)]

fix 2 tests

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Bruno Turcksin [Mon, 11 Nov 2013 20:55:54 +0000 (20:55 +0000)]

Fix a bug in WorkStream for disconnected graph.

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Timo Heister [Mon, 11 Nov 2013 18:27:45 +0000 (18:27 +0000)]

tests: use deal.II constant for PI, might fix tests on cygwin

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Matthias Maier [Mon, 11 Nov 2013 16:17:31 +0000 (16:17 +0000)]

Reorganize the licensing stuff a bit. Add some last license headers and pointers

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Matthias Maier [Mon, 11 Nov 2013 15:57:46 +0000 (15:57 +0000)]

Remove file doxygen.sty from the doc directory - it is ancient can be generated on the fly by modern doxygen

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Matthias Maier [Mon, 11 Nov 2013 15:51:49 +0000 (15:51 +0000)]

Move reports over to the homepage

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Guido Kanschat [Mon, 11 Nov 2013 12:06:35 +0000 (12:06 +0000)]

revert UML

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Toby D. Young [Mon, 11 Nov 2013 10:21:02 +0000 (10:21 +0000)]

Use deal.II style on previous patch.

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Toby D. Young [Mon, 11 Nov 2013 10:19:52 +0000 (10:19 +0000)]

Link to header stdlib.h on FreeBSD.

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Matthias Maier [Mon, 11 Nov 2013 09:06:30 +0000 (09:06 +0000)]

Revert "Revert 29343 again, for the same reason as before." which itself reverted the revert of [...]

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Wolfgang Bangerth [Mon, 11 Nov 2013 01:03:17 +0000 (01:03 +0000)]

Provide documentation.

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Wolfgang Bangerth [Mon, 11 Nov 2013 00:43:42 +0000 (00:43 +0000)]

Add another test.

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Wolfgang Bangerth [Sun, 10 Nov 2013 23:01:32 +0000 (23:01 +0000)]

Adjust a few miscompilations.

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Wolfgang Bangerth [Sun, 10 Nov 2013 22:55:30 +0000 (22:55 +0000)]

Adjust output file again for testing machine.

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Jean-Paul Pelteret [Sun, 10 Nov 2013 22:17:05 +0000 (22:17 +0000)]

Updated Mesh conversion documentation to reflect licencing of example mesh files

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Wolfgang Bangerth [Sun, 10 Nov 2013 18:26:00 +0000 (18:26 +0000)]

Remove postscript version of reports. This is so 1990s!

git-svn-id: https://svn.dealii.org/trunk@31610 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 18:20:01 +0000 (18:20 +0000)]

Shrink the file by only including options that we really care about and
removing the commentary from the doxygen authors. This should address
copyright concerns for the file.

Removing variables we don't care about also helps make this file more future
proof since we no longer include variables that later versions of doxygen may
deprecate or remove.

git-svn-id: https://svn.dealii.org/trunk@31609 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 17:20:37 +0000 (17:20 +0000)]

Use a different form of instantiation in an attempt to work around something that may be a bug in ICC.

git-svn-id: https://svn.dealii.org/trunk@31608 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 17:11:17 +0000 (17:11 +0000)]

Nothing should be built in this directory any more these days, so remove svn:ignore.

git-svn-id: https://svn.dealii.org/trunk@31607 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 17:06:08 +0000 (17:06 +0000)]

Remove svn:executable from mesh files.

git-svn-id: https://svn.dealii.org/trunk@31606 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 15:28:26 +0000 (15:28 +0000)]

Convert some of the VectorOperation::add into VectorOperation::insert as appropriate.

git-svn-id: https://svn.dealii.org/trunk@31605 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 10 Nov 2013 09:26:32 +0000 (09:26 +0000)]

Revert "Also instantiate DataOutStack for 3D"

git-svn-id: https://svn.dealii.org/trunk@31604 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 9 Nov 2013 22:56:29 +0000 (22:56 +0000)]

Also instantiate DataOutStack for 3D

git-svn-id: https://svn.dealii.org/trunk@31603 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sat, 9 Nov 2013 15:38:36 +0000 (15:38 +0000)]

Explicitly compress petsc objects with a VectorOperation.

git-svn-id: https://svn.dealii.org/trunk@31602 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 9 Nov 2013 14:00:15 +0000 (14:00 +0000)]

Adjust accuracy so that numdiff can do its work.

git-svn-id: https://svn.dealii.org/trunk@31601 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 9 Nov 2013 08:52:48 +0000 (08:52 +0000)]

Bugfix: Let setup_tests and tests depend on a compiled library again...

git-svn-id: https://svn.dealii.org/trunk@31600 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sat, 9 Nov 2013 02:29:29 +0000 (02:29 +0000)]

fix warning

git-svn-id: https://svn.dealii.org/trunk@31599 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:53:04 +0000 (23:53 +0000)]

Try to improve one issue where compilers typically can't quite resolve a function overload.

git-svn-id: https://svn.dealii.org/trunk@31598 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:20:11 +0000 (23:20 +0000)]

Reindent the whole file.

git-svn-id: https://svn.dealii.org/trunk@31597 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:18:09 +0000 (23:18 +0000)]

Add several more tests.

git-svn-id: https://svn.dealii.org/trunk@31596 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:17:44 +0000 (23:17 +0000)]

Reimplement the third option for WorkStream, using the colored graph.

git-svn-id: https://svn.dealii.org/trunk@31595 0785d39b-7218-0410-832d-ea1e28bc413d

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