https://gitweb.dealii.org/ - dealii-svn.git/log

kanschat [Sun, 1 Jun 2014 15:39:15 +0000 (15:39 +0000)]

write the format of FESystem into get_fe_by_name

git-svn-id: https://svn.dealii.org/trunk@32992 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 1 Jun 2014 08:29:37 +0000 (08:29 +0000)]

CMake: Workaround for a deadlock with certain git svn versions

git-svn-id: https://svn.dealii.org/trunk@32991 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 30 May 2014 19:20:20 +0000 (19:20 +0000)]

Make one statement also compile with PETSc versions before 3.2.

git-svn-id: https://svn.dealii.org/trunk@32990 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 May 2014 19:09:36 +0000 (19:09 +0000)]

Fix output broken by Timo's recent patch to ParameterHandler.

git-svn-id: https://svn.dealii.org/trunk@32989 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 28 May 2014 22:32:42 +0000 (22:32 +0000)]

Remove unnecessary 'const' specifiers that Intel ICC complains about.

git-svn-id: https://svn.dealii.org/trunk@32988 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Wed, 28 May 2014 19:51:39 +0000 (19:51 +0000)]

Fix typos in step-52.

git-svn-id: https://svn.dealii.org/trunk@32987 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 28 May 2014 17:52:32 +0000 (17:52 +0000)]

prepare for use of parameters

git-svn-id: https://svn.dealii.org/trunk@32986 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 28 May 2014 15:10:52 +0000 (15:10 +0000)]

Bugfix: CMake, second try

git-svn-id: https://svn.dealii.org/trunk@32985 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 28 May 2014 15:10:48 +0000 (15:10 +0000)]

Revert "CMake: Bugfix, do not override internal CMake calls"

So close, but yet completely wrong.

git-svn-id: https://svn.dealii.org/trunk@32984 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 28 May 2014 14:23:09 +0000 (14:23 +0000)]

And provide news items

git-svn-id: https://svn.dealii.org/trunk@32983 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 28 May 2014 14:23:05 +0000 (14:23 +0000)]

CMake: Bugfix, do not override internal CMake calls

I turns out that overriding FIND_PACKAGE and calling into _FIND_PACKAGE is
not really stable

git-svn-id: https://svn.dealii.org/trunk@32982 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 27 May 2014 11:40:22 +0000 (11:40 +0000)]

Revert "CMake: Bugfix: Disable MPI check. This was a bad idea." and resolve symlinks completely

git-svn-id: https://svn.dealii.org/trunk@32981 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 26 May 2014 20:17:08 +0000 (20:17 +0000)]

CMake: Bugfix: Disable MPI check. This was a bad idea.

git-svn-id: https://svn.dealii.org/trunk@32980 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 26 May 2014 18:50:05 +0000 (18:50 +0000)]

CMake: Bugfix: be less restrictive in the mpi interface check

git-svn-id: https://svn.dealii.org/trunk@32979 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 26 May 2014 17:28:34 +0000 (17:28 +0000)]

parameter_handler: add labels to individual parameters in latex output

git-svn-id: https://svn.dealii.org/trunk@32978 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 26 May 2014 17:27:18 +0000 (17:27 +0000)]

fix typo

git-svn-id: https://svn.dealii.org/trunk@32977 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 23 May 2014 19:09:31 +0000 (19:09 +0000)]

forward theta to internal operators and fix the order in src2

git-svn-id: https://svn.dealii.org/trunk@32976 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Fri, 23 May 2014 16:58:46 +0000 (16:58 +0000)]

Improve documentation for step-52.

git-svn-id: https://svn.dealii.org/trunk@32975 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 23 May 2014 15:11:17 +0000 (15:11 +0000)]

Better document the 'transpose' flag of the Trilinos sparse matrix

git-svn-id: https://svn.dealii.org/trunk@32974 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 23 May 2014 14:14:00 +0000 (14:14 +0000)]

accidentally duplicated function

git-svn-id: https://svn.dealii.org/trunk@32973 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 23 May 2014 08:08:15 +0000 (08:08 +0000)]

two more implementations that were missing

git-svn-id: https://svn.dealii.org/trunk@32972 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 23 May 2014 07:59:08 +0000 (07:59 +0000)]

add missing functions and fix wrong timestep

git-svn-id: https://svn.dealii.org/trunk@32971 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 22 May 2014 22:05:31 +0000 (22:05 +0000)]

enable filename selection

git-svn-id: https://svn.dealii.org/trunk@32970 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 22 May 2014 21:39:49 +0000 (21:39 +0000)]

make output to deallog work

git-svn-id: https://svn.dealii.org/trunk@32969 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 22 May 2014 20:35:37 +0000 (20:35 +0000)]

astyle on recent changes

git-svn-id: https://svn.dealii.org/trunk@32968 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 22 May 2014 20:20:24 +0000 (20:20 +0000)]

adjust OutputOperator for AnyData

git-svn-id: https://svn.dealii.org/trunk@32967 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 22 May 2014 20:17:44 +0000 (20:17 +0000)]

copy and make for doxygen examples

git-svn-id: https://svn.dealii.org/trunk@32966 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 22 May 2014 20:17:16 +0000 (20:17 +0000)]

adjust ThetaTimestepping example and documentation to AnyData

git-svn-id: https://svn.dealii.org/trunk@32965 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 22 May 2014 17:25:47 +0000 (17:25 +0000)]

Avoid factors such as 6.25 that need to rounded to 2 decimals.

git-svn-id: https://svn.dealii.org/trunk@32964 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Thu, 22 May 2014 15:44:09 +0000 (15:44 +0000)]

Improve documentation for step-52.

git-svn-id: https://svn.dealii.org/trunk@32963 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 21 May 2014 19:45:36 +0000 (19:45 +0000)]

Change in size to make Intel compiler happy

git-svn-id: https://svn.dealii.org/trunk@32961 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Wed, 21 May 2014 15:53:04 +0000 (15:53 +0000)]

Improve documentation for step-52.

git-svn-id: https://svn.dealii.org/trunk@32958 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 21 May 2014 09:37:19 +0000 (09:37 +0000)]

errors in mg_renumbered_?? fixed

git-svn-id: https://svn.dealii.org/trunk@32954 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Tue, 20 May 2014 22:48:16 +0000 (22:48 +0000)]

Fix a typo in the documentation of step-52.

git-svn-id: https://svn.dealii.org/trunk@32951 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 20 May 2014 20:49:59 +0000 (20:49 +0000)]

add try_find without exception

git-svn-id: https://svn.dealii.org/trunk@32950 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Tue, 20 May 2014 19:18:52 +0000 (19:18 +0000)]

Improve documentation on step-52.

git-svn-id: https://svn.dealii.org/trunk@32948 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 20 May 2014 19:05:42 +0000 (19:05 +0000)]

merge any_data branch

git-svn-id: https://svn.dealii.org/trunk@32947 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 20 May 2014 18:57:09 +0000 (18:57 +0000)]

Try to calm Intel compiler

git-svn-id: https://svn.dealii.org/trunk@32946 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 20 May 2014 11:36:11 +0000 (11:36 +0000)]

CTest: Promote simserv04 to the list of official regression testers

git-svn-id: https://svn.dealii.org/trunk@32943 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 20 May 2014 06:57:14 +0000 (06:57 +0000)]

blank out compatibility warnings in ThetaTimestepping

git-svn-id: https://svn.dealii.org/trunk@32940 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 19 May 2014 14:27:58 +0000 (14:27 +0000)]

Further improve markup.

git-svn-id: https://svn.dealii.org/trunk@32939 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 19 May 2014 13:00:52 +0000 (13:00 +0000)]

Patch by Michal Wichrowksi: run compress() also if there is nothing to do for one processor.

git-svn-id: https://svn.dealii.org/trunk@32936 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 19 May 2014 12:28:26 +0000 (12:28 +0000)]

Improve markup a bit. Compress text vertically.

git-svn-id: https://svn.dealii.org/trunk@32934 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 19 May 2014 12:23:10 +0000 (12:23 +0000)]

Reclassify this unfinished tutorial program.

git-svn-id: https://svn.dealii.org/trunk@32933 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 18 May 2014 20:45:49 +0000 (20:45 +0000)]

Add functions for pointer access

git-svn-id: https://svn.dealii.org/trunk@32932 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Fri, 16 May 2014 19:04:54 +0000 (19:04 +0000)]

Fix typos in the documentation of step-52.

git-svn-id: https://svn.dealii.org/trunk@32927 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 16 May 2014 12:05:20 +0000 (12:05 +0000)]

CMake: Cosmetic change

git-svn-id: https://svn.dealii.org/trunk@32923 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 16 May 2014 12:02:21 +0000 (12:02 +0000)]

CMake: Bugfix: Detect empty variables...

git-svn-id: https://svn.dealii.org/trunk@32922 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 09:45:42 +0000 (09:45 +0000)]

forgotten inline

git-svn-id: https://svn.dealii.org/trunk@32921 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 09:40:20 +0000 (09:40 +0000)]

conversion from NamedData to AnyData and initialization of NamedSelection with AnyData

git-svn-id: https://svn.dealii.org/trunk@32920 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 07:49:06 +0000 (07:49 +0000)]

typo in anydata removed and new function try_read tested

git-svn-id: https://svn.dealii.org/trunk@32919 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 07:26:04 +0000 (07:26 +0000)]

add trial access

git-svn-id: https://svn.dealii.org/trunk@32918 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 06:13:51 +0000 (06:13 +0000)]

add time and timestep to anydata and fix documentation

git-svn-id: https://svn.dealii.org/trunk@32917 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 16 May 2014 05:53:16 +0000 (05:53 +0000)]

Fix typo

git-svn-id: https://svn.dealii.org/trunk@32916 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 22:17:20 +0000 (22:17 +0000)]

CMake: Finalize overhaul:

  * Switch Boost as well.

  * Refactor configure/configure_* stuff

  * Update documentation

git-svn-id: https://svn.dealii.org/trunk@32915 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 22:17:17 +0000 (22:17 +0000)]

CMake: Fix spelling

git-svn-id: https://svn.dealii.org/trunk@32914 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 20:17:23 +0000 (20:17 +0000)]

CMake: Do not forget to checkin updated header

git-svn-id: https://svn.dealii.org/trunk@32913 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 20:06:33 +0000 (20:06 +0000)]

CMake: Port LAPACK as well

git-svn-id: https://svn.dealii.org/trunk@32912 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 20:06:30 +0000 (20:06 +0000)]

CMake: Port MPI, BZIP2 and ZLIB to new find mechanism

git-svn-id: https://svn.dealii.org/trunk@32911 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 15 May 2014 19:59:33 +0000 (19:59 +0000)]

Change documentation for nonlinear problems

git-svn-id: https://svn.dealii.org/trunk@32910 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 18:18:46 +0000 (18:18 +0000)]

CMake: Check for MPI compatibility

git-svn-id: https://svn.dealii.org/trunk@32909 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 17:08:01 +0000 (17:08 +0000)]

CMake: and find petsc again ;-)

git-svn-id: https://svn.dealii.org/trunk@32908 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 17:07:18 +0000 (17:07 +0000)]

CMake: Proof of conecpt:

Be a bit more verbose about cached test results and print the FIND_*()
parameter line if a search is unsuccessful

git-svn-id: https://svn.dealii.org/trunk@32907 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:49 +0000 (16:14 +0000)]

CMake: Cleanup: Well, this is now obsolete

git-svn-id: https://svn.dealii.org/trunk@32906 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:47 +0000 (16:14 +0000)]

CMake: Remove dump-cache feature.

CMake-2.12* is able to read in a CMakeCache.txt file directly, so remove
this horrible code

git-svn-id: https://svn.dealii.org/trunk@32905 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:45 +0000 (16:14 +0000)]

CMake: Some sanity, part II:

* Define global suffix lists for all the FOREACH loops over feature and
deal.II variables.

* Sanely purge all variables associated with a feature if the feature gets
disabled

git-svn-id: https://svn.dealii.org/trunk@32904 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:42 +0000 (16:14 +0000)]

CMake: Some sanity, part I:

Save all cached variables belonging to a feature in a variable
FEATURE_CLEAR_VARIABLES so that we know what cache entry belongs to a
feature.

git-svn-id: https://svn.dealii.org/trunk@32903 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 12:59:56 +0000 (12:59 +0000)]

Documentation: Clarify the state of DEAL_II_LINKER_FLAGS

git-svn-id: https://svn.dealii.org/trunk@32901 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 13 May 2014 08:22:23 +0000 (08:22 +0000)]

add missing inline

git-svn-id: https://svn.dealii.org/trunk@32900 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 12 May 2014 19:35:36 +0000 (19:35 +0000)]

Reduce size of matrix with non-real eigenvalues to avoid trouble with roundoff.

git-svn-id: https://svn.dealii.org/trunk@32899 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 11 May 2014 09:57:47 +0000 (09:57 +0000)]

Sort eigenvalues.

git-svn-id: https://svn.dealii.org/trunk@32898 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 11 May 2014 09:44:02 +0000 (09:44 +0000)]

Compute eigenvalues with GMRES

git-svn-id: https://svn.dealii.org/trunk@32897 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 10 May 2014 11:42:58 +0000 (11:42 +0000)]

Another one.

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bangerth [Thu, 8 May 2014 23:41:57 +0000 (23:41 +0000)]

Patch by Giorgos Kourakos: Make GridIn::read_vtk less rigid.

git-svn-id: https://svn.dealii.org/trunk@32895 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 8 May 2014 23:41:35 +0000 (23:41 +0000)]

Patch by Giorgos Kourakos: Make GridIn::read_vtk less rigid.

git-svn-id: https://svn.dealii.org/trunk@32894 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 8 May 2014 14:34:52 +0000 (14:34 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@32893 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 7 May 2014 22:01:02 +0000 (22:01 +0000)]

One more.

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maier [Wed, 7 May 2014 17:53:40 +0000 (17:53 +0000)]

Remove obsolete file

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heltai [Wed, 7 May 2014 17:17:14 +0000 (17:17 +0000)]

Added QSorted quadrature rule.

git-svn-id: https://svn.dealii.org/trunk@32890 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 5 May 2014 14:53:30 +0000 (14:53 +0000)]

Update test

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kronbichler [Mon, 5 May 2014 08:00:37 +0000 (08:00 +0000)]

Mention change

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kronbichler [Mon, 5 May 2014 07:48:39 +0000 (07:48 +0000)]

Add methods VectorizedArray::load and VectorizedArray store for vectorized read and write of unaligned memory addresses. This also fixes the step-48 test case problems

git-svn-id: https://svn.dealii.org/trunk@32886 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 May 2014 03:23:03 +0000 (03:23 +0000)]

Remove SparsityTools::size_type and replace it by the appropriate size_type of the sparsity pattern we use.

git-svn-id: https://svn.dealii.org/trunk@32885 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 May 2014 03:03:56 +0000 (03:03 +0000)]

Split output files for 32 and 64 bit mode.

git-svn-id: https://svn.dealii.org/trunk@32884 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 May 2014 02:58:09 +0000 (02:58 +0000)]

Add one test.

git-svn-id: https://svn.dealii.org/trunk@32883 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 3 May 2014 10:48:22 +0000 (10:48 +0000)]

Mention change

git-svn-id: https://svn.dealii.org/trunk@32880 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 3 May 2014 10:48:10 +0000 (10:48 +0000)]

step-6 uses the new way of dealing with constraints, i.e., applying them on the fly, so mention this in step-27 and step-16. In step-16, also avoid using deprecated interfaces to multigrid data structures

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turcksin [Fri, 2 May 2014 20:25:11 +0000 (20:25 +0000)]

Start a tutorial using the Runge-Kutta methods implemented in TimeStepping.h

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bangerth [Fri, 2 May 2014 15:07:52 +0000 (15:07 +0000)]

Re-define one of the iterator typedefs to make it consistent with the
corresponding one in ::DoFHandler.

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bangerth [Thu, 1 May 2014 03:05:58 +0000 (03:05 +0000)]

Fix a grammar mistake.

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bangerth [Thu, 1 May 2014 03:05:08 +0000 (03:05 +0000)]

Better document another batch of iterators.

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bangerth [Wed, 30 Apr 2014 15:48:50 +0000 (15:48 +0000)]

Add another reference.

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bangerth [Wed, 30 Apr 2014 13:41:30 +0000 (13:41 +0000)]

Limit concurrency for non-MPI tests.

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bangerth [Wed, 30 Apr 2014 12:25:07 +0000 (12:25 +0000)]

Clarify some of the function docs.

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bangerth [Wed, 30 Apr 2014 12:04:32 +0000 (12:04 +0000)]

Reshuffle and sort the contents of this file.

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bangerth [Wed, 30 Apr 2014 10:32:53 +0000 (10:32 +0000)]

Improve documentation of a function.

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kronbichler [Wed, 30 Apr 2014 09:15:00 +0000 (09:15 +0000)]

Fix FE_DGQArbitraryNodes::has_support_on_face

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turcksin [Tue, 29 Apr 2014 19:43:27 +0000 (19:43 +0000)]

Fix a mistake on the sign in the residual formular for time_stepping.

git-svn-id: https://svn.dealii.org/trunk@32858 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 29 Apr 2014 14:55:24 +0000 (14:55 +0000)]

Initialize ghost elements to zero

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bangerth [Tue, 29 Apr 2014 03:12:22 +0000 (03:12 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@32856 0785d39b-7218-0410-832d-ea1e28bc413d

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