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Wolfgang Bangerth [Fri, 20 Sep 2013 23:00:53 +0000 (23:00 +0000)]

Add an instantiation that was previous missing in optimized mode.

git-svn-id: https://svn.dealii.org/trunk@30877 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 20 Sep 2013 22:21:54 +0000 (22:21 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@30876 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 20 Sep 2013 13:06:08 +0000 (13:06 +0000)]

Add two.

git-svn-id: https://svn.dealii.org/trunk@30872 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Thu, 19 Sep 2013 20:39:37 +0000 (20:39 +0000)]

Change graph_coloring to accept an user-defined function to get the conflict_indices.

git-svn-id: https://svn.dealii.org/trunk@30846 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 19 Sep 2013 18:30:26 +0000 (18:30 +0000)]

fix test

git-svn-id: https://svn.dealii.org/trunk@30839 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Thu, 19 Sep 2013 16:45:08 +0000 (16:45 +0000)]

Added new tests for collect_periodic_face_pairs

git-svn-id: https://svn.dealii.org/trunk@30835 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Thu, 19 Sep 2013 16:33:50 +0000 (16:33 +0000)]

Added tests for collect_periodic_face_pairs and unified code in make_periodicity_constraints

git-svn-id: https://svn.dealii.org/trunk@30832 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 19 Sep 2013 14:58:19 +0000 (14:58 +0000)]

add hdf5 test

git-svn-id: https://svn.dealii.org/trunk@30828 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 19 Sep 2013 14:54:21 +0000 (14:54 +0000)]

tests: move cat_file to other header

git-svn-id: https://svn.dealii.org/trunk@30827 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 19 Sep 2013 14:32:13 +0000 (14:32 +0000)]

Document the exception that is being thrown.

git-svn-id: https://svn.dealii.org/trunk@30826 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Thu, 19 Sep 2013 02:00:54 +0000 (02:00 +0000)]

Step-51 documentation fixes.

git-svn-id: https://svn.dealii.org/trunk@30818 0785d39b-7218-0410-832d-ea1e28bc413d

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Eric Heien [Wed, 18 Sep 2013 21:31:52 +0000 (21:31 +0000)]

Fixed HDF5 multiprocessor bug

git-svn-id: https://svn.dealii.org/trunk@30812 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 18 Sep 2013 21:09:09 +0000 (21:09 +0000)]

Add test for graph_coloring.

git-svn-id: https://svn.dealii.org/trunk@30809 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 18 Sep 2013 16:36:56 +0000 (16:36 +0000)]

add test

git-svn-id: https://svn.dealii.org/trunk@30803 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 18 Sep 2013 16:36:32 +0000 (16:36 +0000)]

find_active_cell_around_point now throws the exception ExcPointNotFound

git-svn-id: https://svn.dealii.org/trunk@30802 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 18 Sep 2013 15:39:17 +0000 (15:39 +0000)]

disable checking MPI_init_thread return value because some implementations always return _SINGLE.

git-svn-id: https://svn.dealii.org/trunk@30799 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Wed, 18 Sep 2013 15:24:34 +0000 (15:24 +0000)]

Fixed add_periodity

git-svn-id: https://svn.dealii.org/trunk@30798 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Wed, 18 Sep 2013 15:22:33 +0000 (15:22 +0000)]

Add a test for graph_coloring.

git-svn-id: https://svn.dealii.org/trunk@30797 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 18 Sep 2013 14:48:18 +0000 (14:48 +0000)]

Explain integrals

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Scott Miller [Wed, 18 Sep 2013 14:28:19 +0000 (14:28 +0000)]

Step-51 documentation updates.

git-svn-id: https://svn.dealii.org/trunk@30792 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 18 Sep 2013 14:00:08 +0000 (14:00 +0000)]

update ignores

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Timo Heister [Wed, 18 Sep 2013 13:31:23 +0000 (13:31 +0000)]

fix asserttion in test

git-svn-id: https://svn.dealii.org/trunk@30787 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 18 Sep 2013 13:16:32 +0000 (13:16 +0000)]

fix r30770

git-svn-id: https://svn.dealii.org/trunk@30786 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 18 Sep 2013 12:10:58 +0000 (12:10 +0000)]

Went through the complete tutorial and made the presentation consistent.

git-svn-id: https://svn.dealii.org/trunk@30785 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Wed, 18 Sep 2013 07:07:32 +0000 (07:07 +0000)]

Improve documentation of positive entries for constrained entries.

git-svn-id: https://svn.dealii.org/trunk@30784 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Wed, 18 Sep 2013 02:20:23 +0000 (02:20 +0000)]

Fix typos in documentation.

git-svn-id: https://svn.dealii.org/trunk@30783 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Tue, 17 Sep 2013 23:23:55 +0000 (23:23 +0000)]

Start graph coloring abilities for work_stream.

git-svn-id: https://svn.dealii.org/trunk@30781 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 19:55:00 +0000 (19:55 +0000)]

Write section on results with solution pictures and convergence graphs. Now we only need to upload the images

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Timo Heister [Tue, 17 Sep 2013 18:49:23 +0000 (18:49 +0000)]

replace mpi_init by mpi_init_thread

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Martin Kronbichler [Tue, 17 Sep 2013 14:38:55 +0000 (14:38 +0000)]

More comments. One more test

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Martin Kronbichler [Tue, 17 Sep 2013 14:24:00 +0000 (14:24 +0000)]

Fix subface interpolation.

git-svn-id: https://svn.dealii.org/trunk@30765 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 13:29:50 +0000 (13:29 +0000)]

Fix a few issues. Still not correct.

git-svn-id: https://svn.dealii.org/trunk@30763 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 17 Sep 2013 12:08:04 +0000 (12:08 +0000)]

Help non-C++11 compilers.

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Martin Kronbichler [Tue, 17 Sep 2013 11:26:58 +0000 (11:26 +0000)]

First step towards implementing FE_FaceP in analogy to FE_FaceQ. Cleanup some code.

git-svn-id: https://svn.dealii.org/trunk@30760 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Tue, 17 Sep 2013 08:03:18 +0000 (08:03 +0000)]

Fix list

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Wolfgang Bangerth [Tue, 17 Sep 2013 01:57:18 +0000 (01:57 +0000)]

Remove 'typename'.

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Wolfgang Bangerth [Mon, 16 Sep 2013 21:34:46 +0000 (21:34 +0000)]

Fix signature disparaty in 64-bit mode.

git-svn-id: https://svn.dealii.org/trunk@30748 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Mon, 16 Sep 2013 20:55:45 +0000 (20:55 +0000)]

Comment a bit more

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Martin Kronbichler [Mon, 16 Sep 2013 20:50:27 +0000 (20:50 +0000)]

Add a comment on vector-valued problems

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Martin Kronbichler [Mon, 16 Sep 2013 20:08:25 +0000 (20:08 +0000)]

Reindent file with astyle

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Wolfgang Bangerth [Mon, 16 Sep 2013 20:03:51 +0000 (20:03 +0000)]

Avoid yet another (completely legitimate) warning.

git-svn-id: https://svn.dealii.org/trunk@30742 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 16 Sep 2013 19:48:26 +0000 (19:48 +0000)]

Avoid (completely legitimate) warning.

git-svn-id: https://svn.dealii.org/trunk@30741 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 16 Sep 2013 19:47:07 +0000 (19:47 +0000)]

Avoid (completely legitimate) warning.

git-svn-id: https://svn.dealii.org/trunk@30740 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 16 Sep 2013 18:49:29 +0000 (18:49 +0000)]

Fix faulty markup.

git-svn-id: https://svn.dealii.org/trunk@30736 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 16 Sep 2013 18:48:17 +0000 (18:48 +0000)]

A couple more.

git-svn-id: https://svn.dealii.org/trunk@30735 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Mon, 16 Sep 2013 17:48:38 +0000 (17:48 +0000)]

Write some more comments.

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Daniel Arndt [Mon, 16 Sep 2013 17:02:05 +0000 (17:02 +0000)]

Changed the data type for periodic face pairs

git-svn-id: https://svn.dealii.org/trunk@30732 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Mon, 16 Sep 2013 15:51:47 +0000 (15:51 +0000)]

Comment on post-processing

git-svn-id: https://svn.dealii.org/trunk@30731 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 16 Sep 2013 12:10:12 +0000 (12:10 +0000)]

fix performance test: same quadrature

git-svn-id: https://svn.dealii.org/trunk@30728 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 16 Sep 2013 03:46:49 +0000 (03:46 +0000)]

Correct a few instances where using the Vector::size_type is more correct than
defining an unrelated typedef in some namespace.

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Wolfgang Bangerth [Mon, 16 Sep 2013 03:34:44 +0000 (03:34 +0000)]

Do not declare a member function as 'inline' in the .cc file as that appears
to confuse GCC when using -flto.

git-svn-id: https://svn.dealii.org/trunk@30723 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sun, 15 Sep 2013 22:48:23 +0000 (22:48 +0000)]

benchmarks: add test for hp

git-svn-id: https://svn.dealii.org/trunk@30719 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sun, 15 Sep 2013 22:47:07 +0000 (22:47 +0000)]

benchmarks: also compile tool

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Matthias Maier [Sun, 15 Sep 2013 09:57:19 +0000 (09:57 +0000)]

CMake: Bugfix, look for template-arguments at the right place

git-svn-id: https://svn.dealii.org/trunk@30709 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 15 Sep 2013 01:17:10 +0000 (01:17 +0000)]

CMake: Improvement: Support direct build directory usage

With this commit it is now possible to use the build directory directly
without the need to install the project first.

git-svn-id: https://svn.dealii.org/trunk@30705 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 14 Sep 2013 09:28:25 +0000 (09:28 +0000)]

Revert the globs in ./source - This was a very bad idea

It is crucial to have a notion of call back into cmake if a new file
appears under ./source - otherwise, we are in trouble...

It is not that bad for the developer who made the change (just run cmake
before make) - but everybody else getting the changes via svn up (or
similar) has no way to know whether a run of cmake is necessary or not.
And we leave users with a build system in an invalid state

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Wolfgang Bangerth [Fri, 13 Sep 2013 21:29:22 +0000 (21:29 +0000)]

Provide further links.

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Wolfgang Bangerth [Fri, 13 Sep 2013 21:25:45 +0000 (21:25 +0000)]

Provide further links.

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Wolfgang Bangerth [Fri, 13 Sep 2013 20:45:43 +0000 (20:45 +0000)]

Fix units of kappa.

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Daniel Arndt [Fri, 13 Sep 2013 10:53:37 +0000 (10:53 +0000)]

Splitted test for periodicity into two tests for periodicity and point_value

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Martin Kronbichler [Fri, 13 Sep 2013 08:37:08 +0000 (08:37 +0000)]

Make compile again

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Martin Kronbichler [Fri, 13 Sep 2013 08:09:14 +0000 (08:09 +0000)]

Fix a few issues, write more in-code comments.

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Martin Kronbichler [Fri, 13 Sep 2013 06:24:03 +0000 (06:24 +0000)]

Fix compile problem with clang

git-svn-id: https://svn.dealii.org/trunk@30681 0785d39b-7218-0410-832d-ea1e28bc413d

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Martin Kronbichler [Fri, 13 Sep 2013 06:07:18 +0000 (06:07 +0000)]

Make tolerance sharper again.

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Daniel Arndt [Thu, 12 Sep 2013 16:46:19 +0000 (16:46 +0000)]

Modified the distributed periodicity test to catch the exception thrown in VectorTools::point_value

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Matthias Maier [Thu, 12 Sep 2013 10:01:38 +0000 (10:01 +0000)]

CMake: Bugfix: Also compile and link the example steps when $ make (release|debug) is called

git-svn-id: https://svn.dealii.org/trunk@30678 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 12 Sep 2013 10:01:28 +0000 (10:01 +0000)]

Doc: Some progress wrt. the CMake documentation

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Martin Kronbichler [Thu, 12 Sep 2013 07:11:06 +0000 (07:11 +0000)]

Some small fixes

git-svn-id: https://svn.dealii.org/trunk@30676 0785d39b-7218-0410-832d-ea1e28bc413d

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Scott Miller [Thu, 12 Sep 2013 02:17:12 +0000 (02:17 +0000)]

Step51 documentation updates.

git-svn-id: https://svn.dealii.org/trunk@30675 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 11 Sep 2013 13:13:42 +0000 (13:13 +0000)]

Small editorial changes.

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Wolfgang Bangerth [Wed, 11 Sep 2013 11:13:17 +0000 (11:13 +0000)]

Remove unused variable.

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Jean-Paul Pelteret [Wed, 11 Sep 2013 09:45:07 +0000 (09:45 +0000)]

Added DoFTools::extract_locally_*_dofs function instantiations for hp::DofHandler class

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Wolfgang Bangerth [Tue, 10 Sep 2013 20:49:53 +0000 (20:49 +0000)]

Remove a lot of code, now that all DoFHandlers have cell dof caches.

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Wolfgang Bangerth [Tue, 10 Sep 2013 20:13:37 +0000 (20:13 +0000)]

Merge a bunch of functions now that hp::DoFHandler and DoFHandler behave similarly.

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Wolfgang Bangerth [Tue, 10 Sep 2013 20:03:59 +0000 (20:03 +0000)]

Note the hp::DoFHandler cell dof indices cache.

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Wolfgang Bangerth [Tue, 10 Sep 2013 19:49:25 +0000 (19:49 +0000)]

Introduce a way to query the address of the DoF cache in a generic way. This will allow unifying in the next step.

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Wolfgang Bangerth [Tue, 10 Sep 2013 18:18:22 +0000 (18:18 +0000)]

Add missing fields to memory_consumption().

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Wolfgang Bangerth [Tue, 10 Sep 2013 18:13:31 +0000 (18:13 +0000)]

Implement the hp::DoFHandler cell dof indices cache in the same way as we already have for the ::DoFHandler.

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Timo Heister [Tue, 10 Sep 2013 10:44:35 +0000 (10:44 +0000)]

update ignores

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Timo Heister [Tue, 10 Sep 2013 10:43:14 +0000 (10:43 +0000)]

update test

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Timo Heister [Mon, 9 Sep 2013 21:37:53 +0000 (21:37 +0000)]

add new test for multigrid an slit geometry

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Timo Heister [Mon, 9 Sep 2013 21:36:28 +0000 (21:36 +0000)]

parallel mg: clean up debug output, add additional checks

git-svn-id: https://svn.dealii.org/trunk@30662 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 9 Sep 2013 21:30:09 +0000 (21:30 +0000)]

avoid deprecated p4est enum

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Timo Heister [Mon, 9 Sep 2013 21:28:23 +0000 (21:28 +0000)]

reverse condition for multigrid

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Timo Heister [Mon, 9 Sep 2013 21:26:14 +0000 (21:26 +0000)]

reformat comments

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Timo Heister [Mon, 9 Sep 2013 21:21:06 +0000 (21:21 +0000)]

parallel geometric multigrid: limit the level difference at vertices

git-svn-id: https://svn.dealii.org/trunk@30658 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 20:09:17 +0000 (20:09 +0000)]

Rename a bunch of classes.

git-svn-id: https://svn.dealii.org/trunk@30657 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 19:26:27 +0000 (19:26 +0000)]

Move DoFObjects into dof_faces.h since this is now the only place where it is referenced.

git-svn-id: https://svn.dealii.org/trunk@30656 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 19:10:18 +0000 (19:10 +0000)]

Implement the compression scheme for DoF indices stored on cells.

git-svn-id: https://svn.dealii.org/trunk@30655 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Mon, 9 Sep 2013 17:03:49 +0000 (17:03 +0000)]

VectorTools::point_value and VectorTools::point_difference are now throwing an error if the required point is not available on the current processor

git-svn-id: https://svn.dealii.org/trunk@30654 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 9 Sep 2013 16:35:01 +0000 (16:35 +0000)]

one more c++11 bugfix (thanks Ian Rose)

git-svn-id: https://svn.dealii.org/trunk@30653 0785d39b-7218-0410-832d-ea1e28bc413d

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Felix Gruber [Mon, 9 Sep 2013 15:52:14 +0000 (15:52 +0000)]

fixed typo

git-svn-id: https://svn.dealii.org/trunk@30652 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Mon, 9 Sep 2013 15:28:59 +0000 (15:28 +0000)]

commit results for local refinement

git-svn-id: https://svn.dealii.org/trunk@30651 0785d39b-7218-0410-832d-ea1e28bc413d

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Felix Gruber [Mon, 9 Sep 2013 15:26:59 +0000 (15:26 +0000)]

doxygen: change EXAMPLE_PATH such that the lines from Block_matrix_array.cc can be included into the documentation of BlockMatrixArray

git-svn-id: https://svn.dealii.org/trunk@30650 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 13:47:06 +0000 (13:47 +0000)]

Add a space to an error message.

git-svn-id: https://svn.dealii.org/trunk@30649 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 13:45:28 +0000 (13:45 +0000)]

Avoid a C++11-ism.

git-svn-id: https://svn.dealii.org/trunk@30648 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 11:53:35 +0000 (11:53 +0000)]

Make it compile with gcc 4.1.2, I hope.

git-svn-id: https://svn.dealii.org/trunk@30647 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 03:29:02 +0000 (03:29 +0000)]

More C++11 fixes.

git-svn-id: https://svn.dealii.org/trunk@30646 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 02:58:13 +0000 (02:58 +0000)]

Fix a couple C++11 usages.

git-svn-id: https://svn.dealii.org/trunk@30645 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 9 Sep 2013 02:54:13 +0000 (02:54 +0000)]

Use '> >' instead of '>>' to end a template.

git-svn-id: https://svn.dealii.org/trunk@30644 0785d39b-7218-0410-832d-ea1e28bc413d

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